Wall clock time and date at job start Sun Mar 29 2020 21:54:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86807 * 119.99549 * 2 1
4 4 H 1.48500 * 109.47167 * 270.00137 * 3 2 1
5 5 H 1.48501 * 109.47192 * 30.00200 * 3 2 1
6 6 H 1.48502 * 109.46706 * 150.00267 * 3 2 1
7 7 C 1.38806 * 120.00260 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99849 * 160.27389 * 7 2 1
9 9 N 1.36935 * 120.00156 * 340.27105 * 7 2 1
10 10 C 1.46496 * 120.00307 * 320.53987 * 9 7 2
11 11 C 1.53002 * 109.46953 * 269.99692 * 10 9 7
12 12 C 1.52995 * 109.47297 * 179.97438 * 11 10 9
13 13 C 1.53004 * 109.47066 * 294.99515 * 12 11 10
14 14 C 1.53001 * 109.47380 * 180.02562 * 13 12 11
15 15 C 1.53002 * 109.47062 * 60.00127 * 14 13 12
16 16 C 1.53004 * 109.46919 * 300.00154 * 15 14 13
17 17 C 1.52995 * 109.47066 * 60.00097 * 16 15 14
18 18 C 1.46507 * 119.99888 * 140.52954 * 9 7 2
19 19 C 1.52996 * 117.49846 * 3.29798 * 18 9 7
20 20 C 1.52994 * 117.50204 * 294.67236 * 18 9 7
21 21 H 0.96993 * 120.00593 * 355.02281 * 1 2 3
22 22 H 1.09003 * 109.47258 * 29.99287 * 10 9 7
23 23 H 1.08999 * 109.47585 * 149.99629 * 10 9 7
24 24 H 1.09003 * 109.46809 * 299.99871 * 11 10 9
25 25 H 1.08999 * 109.47026 * 59.99595 * 11 10 9
26 26 H 1.08994 * 109.47517 * 54.99817 * 12 11 10
27 27 H 1.08994 * 109.47199 * 300.00497 * 13 12 11
28 28 H 1.09002 * 109.46670 * 59.99954 * 13 12 11
29 29 H 1.09006 * 109.46967 * 300.00488 * 14 13 12
30 30 H 1.08994 * 109.46929 * 180.02562 * 14 13 12
31 31 H 1.08995 * 109.46706 * 180.02562 * 15 14 13
32 32 H 1.08994 * 109.46858 * 59.99963 * 15 14 13
33 33 H 1.08994 * 109.47199 * 299.99600 * 16 15 14
34 34 H 1.09002 * 109.46670 * 180.02562 * 16 15 14
35 35 H 1.09001 * 109.47379 * 179.97438 * 17 16 15
36 36 H 1.09003 * 109.47526 * 59.99945 * 17 16 15
37 37 H 1.09000 * 115.54800 * 148.99478 * 18 9 7
38 38 H 1.09001 * 117.49921 * 359.97438 * 19 18 9
39 39 H 1.08993 * 117.50185 * 145.01868 * 19 18 9
40 40 H 1.09000 * 117.50017 * 214.97829 * 20 18 9
41 41 H 1.09005 * 117.49953 * 359.97438 * 20 18 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6179 0.0000
4 1 2.4976 2.0466 -1.4001
5 1 1.4475 2.6527 0.7001
6 1 3.5477 1.4403 0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 3.0427 -1.2293 -0.3162
9 7 1.3860 -2.3534 0.3993
10 6 0.4643 -2.3295 1.5377
11 6 1.2397 -2.6055 2.8275
12 6 0.2774 -2.5800 4.0166
13 6 -0.2928 -1.1697 4.1811
14 6 -1.2547 -1.1440 5.3706
15 6 -0.5035 -1.5419 6.6427
16 6 0.0666 -2.9522 6.4782
17 6 1.0285 -2.9779 5.2887
18 6 1.6396 -3.6090 -0.3117
19 6 2.6699 -3.5849 -1.4425
20 6 1.1795 -3.7018 -1.7678
21 1 -0.4851 0.8368 0.0729
22 1 -0.0095 -1.3499 1.6012
23 1 -0.3001 -3.0947 1.4025
24 1 1.7135 -3.5851 2.7640
25 1 2.0041 -1.8403 2.9627
26 1 -0.5369 -3.2828 3.8402
27 1 0.5214 -0.4669 4.3574
28 1 -0.8276 -0.8861 3.2746
29 1 -2.0691 -1.8469 5.1946
30 1 -1.6612 -0.1394 5.4874
31 1 -1.1889 -1.5240 7.4899
32 1 0.3108 -0.8391 6.8186
33 1 -0.7476 -3.6550 6.3023
34 1 0.6014 -3.2358 7.3846
35 1 1.4351 -3.9824 5.1717
36 1 1.8429 -2.2750 5.4647
37 1 1.5780 -4.5130 0.2942
38 1 3.1587 -2.6347 -1.6578
39 1 3.2864 -4.4730 -1.5807
40 1 0.8154 -4.6669 -2.1201
41 1 0.6876 -2.8288 -2.1969
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000361565699.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:54:29
Heat of formation + Delta-G solvation = 8.790522 kcal
Electronic energy + Delta-G solvation = -17669.514430 eV
Core-core repulsion = 15163.244841 eV
Total energy + Delta-G solvation = -2506.269588 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 237.179 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-38.46382 -36.85220 -33.90374 -32.28268 -30.46184 -30.16927 -26.99626 -24.35524
-22.67637 -21.91313 -21.28896 -20.24203 -19.49028 -19.29365 -16.21310 -15.38630
-15.04133 -14.56957 -14.19401 -13.91209 -13.74975 -13.54172 -12.84836 -12.63318
-12.07798 -11.84072 -11.71744 -11.47572 -11.31537 -10.89671 -10.81745 -10.68510
-10.64453 -10.54904 -10.20394 -10.09068 -10.00608 -9.74130 -9.56718 -9.47768
-9.21552 -9.13824 -8.40936 -6.44036 -5.71147 -3.38124 3.35688 3.43691
3.46953 4.48280 4.96018 5.01495 5.03233 5.07333 5.33712 5.38622
5.54642 5.56874 5.79709 5.82518 5.83609 5.88026 5.91335 5.98920
6.18726 6.23282 6.25920 6.31149 6.35869 6.41098 6.46793 6.54868
6.59485 6.63082 6.64857 6.78986 6.86005 6.91676 7.00418 7.13096
7.29758 7.35221 7.78356 7.85716 8.56684 9.23197 9.84451 10.43685
11.22167
Molecular weight = 237.18amu
Principal moments of inertia in cm(-1)
A = 0.020622 B = 0.007921 C = 0.006329
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1357.424189 B = 3534.212096 C = 4423.273536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.883 5.883
2 C 0.015 3.985
3 Si 0.891 3.109
4 H -0.286 1.286
5 H -0.288 1.288
6 H -0.278 1.278
7 C -0.256 4.256
8 H 0.061 0.939
9 N -0.554 5.554
10 C 0.149 3.851
11 C -0.129 4.129
12 C -0.081 4.081
13 C -0.115 4.115
14 C -0.119 4.119
15 C -0.118 4.118
16 C -0.118 4.118
17 C -0.113 4.113
18 C 0.122 3.878
19 C -0.197 4.197
20 C -0.223 4.223
21 H 0.253 0.747
22 H 0.098 0.902
23 H 0.021 0.979
24 H 0.041 0.959
25 H 0.057 0.943
26 H 0.060 0.940
27 H 0.057 0.943
28 H 0.074 0.926
29 H 0.057 0.943
30 H 0.055 0.945
31 H 0.053 0.947
32 H 0.058 0.942
33 H 0.058 0.942
34 H 0.053 0.947
35 H 0.055 0.945
36 H 0.058 0.942
37 H 0.084 0.916
38 H 0.096 0.904
39 H 0.072 0.928
40 H 0.067 0.933
41 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.659 -4.826 9.590 10.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.525 5.525
2 C -0.186 4.186
3 Si 0.720 3.280
4 H -0.213 1.213
5 H -0.214 1.214
6 H -0.203 1.203
7 C -0.385 4.385
8 H 0.078 0.922
9 N -0.270 5.270
10 C 0.024 3.976
11 C -0.169 4.169
12 C -0.100 4.100
13 C -0.152 4.152
14 C -0.157 4.157
15 C -0.155 4.155
16 C -0.155 4.155
17 C -0.151 4.151
18 C 0.012 3.988
19 C -0.235 4.235
20 C -0.264 4.264
21 H 0.063 0.937
22 H 0.115 0.885
23 H 0.039 0.961
24 H 0.059 0.941
25 H 0.076 0.924
26 H 0.079 0.921
27 H 0.076 0.924
28 H 0.092 0.908
29 H 0.076 0.924
30 H 0.074 0.926
31 H 0.071 0.929
32 H 0.077 0.923
33 H 0.076 0.924
34 H 0.072 0.928
35 H 0.074 0.926
36 H 0.077 0.923
37 H 0.102 0.898
38 H 0.114 0.886
39 H 0.090 0.910
40 H 0.086 0.914
41 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -0.795 -4.655 9.551 10.655
hybrid contribution 0.448 0.873 -0.113 0.988
sum -0.346 -3.782 9.438 10.173
Atomic orbital electron populations
1.70064 1.05439 1.25965 1.51031 1.25200 0.94973 0.98603 0.99784
0.86499 0.79654 0.83985 0.77833 1.21271 1.21442 1.20301 1.18987
0.93155 0.85159 1.41235 0.92170 1.43409 1.50955 1.02912 1.29751
1.20975 0.90491 1.02386 0.83761 1.22199 0.98638 1.00328 0.95700
1.21094 0.97928 0.96575 0.94383 1.21612 0.98695 0.96965 0.97938
1.21552 0.98324 1.00646 0.95136 1.21528 0.99544 0.96974 0.97503
1.21527 0.99026 0.96942 0.98020 1.21600 0.97946 1.00864 0.94672
1.21227 1.00394 0.90826 0.86307 1.22998 0.92155 1.01660 1.06689
1.23343 0.96796 1.00795 1.05445 0.93680 0.88473 0.96087 0.94051
0.92396 0.92110 0.92407 0.90782 0.92396 0.92606 0.92854 0.92306
0.92366 0.92814 0.92600 0.92327 0.89817 0.88578 0.90954 0.91434
0.89076
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.01 11.50 55.49 0.64 -24.37 16
2 C 0.01 0.41 4.98 -17.43 -0.09 0.32 16
3 Si 0.89 21.46 29.60 -169.99 -5.03 16.43 16
4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
7 C -0.26 -6.91 8.47 -15.06 -0.13 -7.04 16
8 H 0.06 1.65 6.75 -52.49 -0.35 1.29 16
9 N -0.55 -13.82 2.75 -165.67 -0.46 -14.27 16
10 C 0.15 3.45 5.09 -4.04 -0.02 3.43 16
11 C -0.13 -2.52 5.01 -26.73 -0.13 -2.65 16
12 C -0.08 -1.31 2.19 -90.62 -0.20 -1.51 16
13 C -0.11 -1.90 4.96 -26.73 -0.13 -2.03 16
14 C -0.12 -1.63 5.92 -26.73 -0.16 -1.78 16
15 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16
16 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16
17 C -0.11 -1.58 5.20 -26.73 -0.14 -1.72 16
18 C 0.12 2.69 6.56 -67.93 -0.45 2.25 16
19 C -0.20 -4.03 9.80 -26.73 -0.26 -4.29 16
20 C -0.22 -4.73 10.36 -26.73 -0.28 -5.01 16
21 H 0.25 6.94 8.32 -40.82 -0.34 6.60 16
22 H 0.10 2.48 4.01 -51.93 -0.21 2.27 16
23 H 0.02 0.47 8.07 -51.93 -0.42 0.05 16
24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16
26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
28 H 0.07 1.40 6.56 -51.93 -0.34 1.05 16
29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
37 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16
38 H 0.10 2.14 6.46 -51.93 -0.34 1.80 16
39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
41 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16
LS Contribution 316.00 15.07 4.76 4.76
Total: -1.00 -27.64 316.00 -9.94 -37.58
By element:
Atomic # 1 Polarization: 10.65 SS G_CDS: -7.56 Total: 3.10 kcal
Atomic # 6 Polarization: -20.92 SS G_CDS: -2.30 Total: -23.22 kcal
Atomic # 7 Polarization: -38.83 SS G_CDS: 0.18 Total: -38.65 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -27.64 -9.94 -37.58 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000361565699.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.372 kcal
(2) G-P(sol) polarization free energy of solvation -27.638 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.734 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.791 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds