Wall clock time and date at job start Sun Mar 29 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99549 * 2 1 4 4 H 1.48500 * 109.47167 * 270.00137 * 3 2 1 5 5 H 1.48501 * 109.47192 * 30.00200 * 3 2 1 6 6 H 1.48502 * 109.46706 * 150.00267 * 3 2 1 7 7 C 1.38806 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99849 * 160.27389 * 7 2 1 9 9 N 1.36935 * 120.00156 * 340.27105 * 7 2 1 10 10 C 1.46496 * 120.00307 * 320.53987 * 9 7 2 11 11 C 1.53002 * 109.46953 * 269.99692 * 10 9 7 12 12 C 1.52995 * 109.47297 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47066 * 294.99515 * 12 11 10 14 14 C 1.53001 * 109.47380 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47062 * 60.00127 * 14 13 12 16 16 C 1.53004 * 109.46919 * 300.00154 * 15 14 13 17 17 C 1.52995 * 109.47066 * 60.00097 * 16 15 14 18 18 C 1.46507 * 119.99888 * 140.52954 * 9 7 2 19 19 C 1.52996 * 117.49846 * 3.29798 * 18 9 7 20 20 C 1.52994 * 117.50204 * 294.67236 * 18 9 7 21 21 H 0.96993 * 120.00593 * 355.02281 * 1 2 3 22 22 H 1.09003 * 109.47258 * 29.99287 * 10 9 7 23 23 H 1.08999 * 109.47585 * 149.99629 * 10 9 7 24 24 H 1.09003 * 109.46809 * 299.99871 * 11 10 9 25 25 H 1.08999 * 109.47026 * 59.99595 * 11 10 9 26 26 H 1.08994 * 109.47517 * 54.99817 * 12 11 10 27 27 H 1.08994 * 109.47199 * 300.00497 * 13 12 11 28 28 H 1.09002 * 109.46670 * 59.99954 * 13 12 11 29 29 H 1.09006 * 109.46967 * 300.00488 * 14 13 12 30 30 H 1.08994 * 109.46929 * 180.02562 * 14 13 12 31 31 H 1.08995 * 109.46706 * 180.02562 * 15 14 13 32 32 H 1.08994 * 109.46858 * 59.99963 * 15 14 13 33 33 H 1.08994 * 109.47199 * 299.99600 * 16 15 14 34 34 H 1.09002 * 109.46670 * 180.02562 * 16 15 14 35 35 H 1.09001 * 109.47379 * 179.97438 * 17 16 15 36 36 H 1.09003 * 109.47526 * 59.99945 * 17 16 15 37 37 H 1.09000 * 115.54800 * 148.99478 * 18 9 7 38 38 H 1.09001 * 117.49921 * 359.97438 * 19 18 9 39 39 H 1.08993 * 117.50185 * 145.01868 * 19 18 9 40 40 H 1.09000 * 117.50017 * 214.97829 * 20 18 9 41 41 H 1.09005 * 117.49953 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0427 -1.2293 -0.3162 9 7 1.3860 -2.3534 0.3993 10 6 0.4643 -2.3295 1.5377 11 6 1.2397 -2.6055 2.8275 12 6 0.2774 -2.5800 4.0166 13 6 -0.2928 -1.1697 4.1811 14 6 -1.2547 -1.1440 5.3706 15 6 -0.5035 -1.5419 6.6427 16 6 0.0666 -2.9522 6.4782 17 6 1.0285 -2.9779 5.2887 18 6 1.6396 -3.6090 -0.3117 19 6 2.6699 -3.5849 -1.4425 20 6 1.1795 -3.7018 -1.7678 21 1 -0.4851 0.8368 0.0729 22 1 -0.0095 -1.3499 1.6012 23 1 -0.3001 -3.0947 1.4025 24 1 1.7135 -3.5851 2.7640 25 1 2.0041 -1.8403 2.9627 26 1 -0.5369 -3.2828 3.8402 27 1 0.5214 -0.4669 4.3574 28 1 -0.8276 -0.8861 3.2746 29 1 -2.0691 -1.8469 5.1946 30 1 -1.6612 -0.1394 5.4874 31 1 -1.1889 -1.5240 7.4899 32 1 0.3108 -0.8391 6.8186 33 1 -0.7476 -3.6550 6.3023 34 1 0.6014 -3.2358 7.3846 35 1 1.4351 -3.9824 5.1717 36 1 1.8429 -2.2750 5.4647 37 1 1.5780 -4.5130 0.2942 38 1 3.1587 -2.6347 -1.6578 39 1 3.2864 -4.4730 -1.5807 40 1 0.8154 -4.6669 -2.1201 41 1 0.6876 -2.8288 -2.1969 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361565699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:29 Heat of formation + Delta-G solvation = 8.790522 kcal Electronic energy + Delta-G solvation = -17669.514430 eV Core-core repulsion = 15163.244841 eV Total energy + Delta-G solvation = -2506.269588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.46382 -36.85220 -33.90374 -32.28268 -30.46184 -30.16927 -26.99626 -24.35524 -22.67637 -21.91313 -21.28896 -20.24203 -19.49028 -19.29365 -16.21310 -15.38630 -15.04133 -14.56957 -14.19401 -13.91209 -13.74975 -13.54172 -12.84836 -12.63318 -12.07798 -11.84072 -11.71744 -11.47572 -11.31537 -10.89671 -10.81745 -10.68510 -10.64453 -10.54904 -10.20394 -10.09068 -10.00608 -9.74130 -9.56718 -9.47768 -9.21552 -9.13824 -8.40936 -6.44036 -5.71147 -3.38124 3.35688 3.43691 3.46953 4.48280 4.96018 5.01495 5.03233 5.07333 5.33712 5.38622 5.54642 5.56874 5.79709 5.82518 5.83609 5.88026 5.91335 5.98920 6.18726 6.23282 6.25920 6.31149 6.35869 6.41098 6.46793 6.54868 6.59485 6.63082 6.64857 6.78986 6.86005 6.91676 7.00418 7.13096 7.29758 7.35221 7.78356 7.85716 8.56684 9.23197 9.84451 10.43685 11.22167 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020622 B = 0.007921 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.424189 B = 3534.212096 C = 4423.273536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.015 3.985 3 Si 0.891 3.109 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.061 0.939 9 N -0.554 5.554 10 C 0.149 3.851 11 C -0.129 4.129 12 C -0.081 4.081 13 C -0.115 4.115 14 C -0.119 4.119 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.113 4.113 18 C 0.122 3.878 19 C -0.197 4.197 20 C -0.223 4.223 21 H 0.253 0.747 22 H 0.098 0.902 23 H 0.021 0.979 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -4.826 9.590 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.186 4.186 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.078 0.922 9 N -0.270 5.270 10 C 0.024 3.976 11 C -0.169 4.169 12 C -0.100 4.100 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.155 4.155 16 C -0.155 4.155 17 C -0.151 4.151 18 C 0.012 3.988 19 C -0.235 4.235 20 C -0.264 4.264 21 H 0.063 0.937 22 H 0.115 0.885 23 H 0.039 0.961 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.795 -4.655 9.551 10.655 hybrid contribution 0.448 0.873 -0.113 0.988 sum -0.346 -3.782 9.438 10.173 Atomic orbital electron populations 1.70064 1.05439 1.25965 1.51031 1.25200 0.94973 0.98603 0.99784 0.86499 0.79654 0.83985 0.77833 1.21271 1.21442 1.20301 1.18987 0.93155 0.85159 1.41235 0.92170 1.43409 1.50955 1.02912 1.29751 1.20975 0.90491 1.02386 0.83761 1.22199 0.98638 1.00328 0.95700 1.21094 0.97928 0.96575 0.94383 1.21612 0.98695 0.96965 0.97938 1.21552 0.98324 1.00646 0.95136 1.21528 0.99544 0.96974 0.97503 1.21527 0.99026 0.96942 0.98020 1.21600 0.97946 1.00864 0.94672 1.21227 1.00394 0.90826 0.86307 1.22998 0.92155 1.01660 1.06689 1.23343 0.96796 1.00795 1.05445 0.93680 0.88473 0.96087 0.94051 0.92396 0.92110 0.92407 0.90782 0.92396 0.92606 0.92854 0.92306 0.92366 0.92814 0.92600 0.92327 0.89817 0.88578 0.90954 0.91434 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.01 11.50 55.49 0.64 -24.37 16 2 C 0.01 0.41 4.98 -17.43 -0.09 0.32 16 3 Si 0.89 21.46 29.60 -169.99 -5.03 16.43 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -6.91 8.47 -15.06 -0.13 -7.04 16 8 H 0.06 1.65 6.75 -52.49 -0.35 1.29 16 9 N -0.55 -13.82 2.75 -165.67 -0.46 -14.27 16 10 C 0.15 3.45 5.09 -4.04 -0.02 3.43 16 11 C -0.13 -2.52 5.01 -26.73 -0.13 -2.65 16 12 C -0.08 -1.31 2.19 -90.62 -0.20 -1.51 16 13 C -0.11 -1.90 4.96 -26.73 -0.13 -2.03 16 14 C -0.12 -1.63 5.92 -26.73 -0.16 -1.78 16 15 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 16 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 17 C -0.11 -1.58 5.20 -26.73 -0.14 -1.72 16 18 C 0.12 2.69 6.56 -67.93 -0.45 2.25 16 19 C -0.20 -4.03 9.80 -26.73 -0.26 -4.29 16 20 C -0.22 -4.73 10.36 -26.73 -0.28 -5.01 16 21 H 0.25 6.94 8.32 -40.82 -0.34 6.60 16 22 H 0.10 2.48 4.01 -51.93 -0.21 2.27 16 23 H 0.02 0.47 8.07 -51.93 -0.42 0.05 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.40 6.56 -51.93 -0.34 1.05 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.10 2.14 6.46 -51.93 -0.34 1.80 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -27.64 316.00 -9.94 -37.58 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.56 Total: 3.10 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -2.30 Total: -23.22 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.18 Total: -38.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.64 -9.94 -37.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361565699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.372 kcal (2) G-P(sol) polarization free energy of solvation -27.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds