Wall clock time and date at job start Sun Mar 29 2020 21:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99549 * 2 1 4 4 H 1.48500 * 109.47167 * 270.00137 * 3 2 1 5 5 H 1.48501 * 109.47192 * 30.00200 * 3 2 1 6 6 H 1.48502 * 109.46706 * 150.00267 * 3 2 1 7 7 C 1.38806 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99849 * 160.27389 * 7 2 1 9 9 N 1.36935 * 120.00156 * 340.27105 * 7 2 1 10 10 C 1.46496 * 120.00307 * 320.53987 * 9 7 2 11 11 C 1.53002 * 109.46953 * 269.99692 * 10 9 7 12 12 C 1.52995 * 109.47297 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47066 * 294.99515 * 12 11 10 14 14 C 1.53001 * 109.47380 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47062 * 60.00127 * 14 13 12 16 16 C 1.53004 * 109.46919 * 300.00154 * 15 14 13 17 17 C 1.52995 * 109.47066 * 60.00097 * 16 15 14 18 18 C 1.46507 * 119.99888 * 140.52954 * 9 7 2 19 19 C 1.52996 * 117.49846 * 3.29798 * 18 9 7 20 20 C 1.52994 * 117.50204 * 294.67236 * 18 9 7 21 21 H 0.96993 * 120.00593 * 355.02281 * 1 2 3 22 22 H 1.09003 * 109.47258 * 29.99287 * 10 9 7 23 23 H 1.08999 * 109.47585 * 149.99629 * 10 9 7 24 24 H 1.09003 * 109.46809 * 299.99871 * 11 10 9 25 25 H 1.08999 * 109.47026 * 59.99595 * 11 10 9 26 26 H 1.08994 * 109.47517 * 54.99817 * 12 11 10 27 27 H 1.08994 * 109.47199 * 300.00497 * 13 12 11 28 28 H 1.09002 * 109.46670 * 59.99954 * 13 12 11 29 29 H 1.09006 * 109.46967 * 300.00488 * 14 13 12 30 30 H 1.08994 * 109.46929 * 180.02562 * 14 13 12 31 31 H 1.08995 * 109.46706 * 180.02562 * 15 14 13 32 32 H 1.08994 * 109.46858 * 59.99963 * 15 14 13 33 33 H 1.08994 * 109.47199 * 299.99600 * 16 15 14 34 34 H 1.09002 * 109.46670 * 180.02562 * 16 15 14 35 35 H 1.09001 * 109.47379 * 179.97438 * 17 16 15 36 36 H 1.09003 * 109.47526 * 59.99945 * 17 16 15 37 37 H 1.09000 * 115.54800 * 148.99478 * 18 9 7 38 38 H 1.09001 * 117.49921 * 359.97438 * 19 18 9 39 39 H 1.08993 * 117.50185 * 145.01868 * 19 18 9 40 40 H 1.09000 * 117.50017 * 214.97829 * 20 18 9 41 41 H 1.09005 * 117.49953 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0427 -1.2293 -0.3162 9 7 1.3860 -2.3534 0.3993 10 6 0.4643 -2.3295 1.5377 11 6 1.2397 -2.6055 2.8275 12 6 0.2774 -2.5800 4.0166 13 6 -0.2928 -1.1697 4.1811 14 6 -1.2547 -1.1440 5.3706 15 6 -0.5035 -1.5419 6.6427 16 6 0.0666 -2.9522 6.4782 17 6 1.0285 -2.9779 5.2887 18 6 1.6396 -3.6090 -0.3117 19 6 2.6699 -3.5849 -1.4425 20 6 1.1795 -3.7018 -1.7678 21 1 -0.4851 0.8368 0.0729 22 1 -0.0095 -1.3499 1.6012 23 1 -0.3001 -3.0947 1.4025 24 1 1.7135 -3.5851 2.7640 25 1 2.0041 -1.8403 2.9627 26 1 -0.5369 -3.2828 3.8402 27 1 0.5214 -0.4669 4.3574 28 1 -0.8276 -0.8861 3.2746 29 1 -2.0691 -1.8469 5.1946 30 1 -1.6612 -0.1394 5.4874 31 1 -1.1889 -1.5240 7.4899 32 1 0.3108 -0.8391 6.8186 33 1 -0.7476 -3.6550 6.3023 34 1 0.6014 -3.2358 7.3846 35 1 1.4351 -3.9824 5.1717 36 1 1.8429 -2.2750 5.4647 37 1 1.5780 -4.5130 0.2942 38 1 3.1587 -2.6347 -1.6578 39 1 3.2864 -4.4730 -1.5807 40 1 0.8154 -4.6669 -2.1201 41 1 0.6876 -2.8288 -2.1969 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361565699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:29 Heat of formation + Delta-G solvation = -3.378653 kcal Electronic energy + Delta-G solvation = -17670.042125 eV Core-core repulsion = 15163.244841 eV Total energy + Delta-G solvation = -2506.797283 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.75492 -38.57910 -35.60667 -33.98600 -31.98013 -31.56051 -28.63854 -26.23346 -24.13113 -23.19699 -22.94257 -21.73869 -21.23041 -20.52688 -18.18531 -17.19733 -16.60909 -16.08134 -15.85353 -15.24044 -15.01589 -14.82658 -14.48711 -14.24119 -13.79579 -13.32064 -13.19017 -12.96303 -12.84773 -12.64824 -12.48694 -12.31796 -12.00906 -11.94601 -11.86853 -11.74965 -11.43162 -11.28946 -11.20684 -10.94437 -10.73860 -10.68464 -10.44946 -8.45985 -7.75193 -5.47954 1.41162 1.44032 1.53054 2.48493 3.16331 3.42463 3.52014 3.86352 3.93029 4.00495 4.30172 4.32787 4.38165 4.50114 4.54652 4.60320 4.66271 4.68299 4.71822 4.76696 4.87157 4.93092 4.99314 5.04805 5.13903 5.17448 5.21905 5.30657 5.33424 5.35539 5.44065 5.48356 5.51342 5.54874 5.60862 5.68623 5.75110 5.94121 6.49236 7.19054 7.88264 8.40610 9.12428 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020622 B = 0.007921 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.424189 B = 3534.212096 C = 4423.273536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.031 4.031 3 Si 0.947 3.053 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.259 4.259 8 H 0.054 0.946 9 N -0.572 5.572 10 C 0.151 3.849 11 C -0.113 4.113 12 C -0.075 4.075 13 C -0.112 4.112 14 C -0.115 4.115 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.109 4.109 18 C 0.099 3.901 19 C -0.181 4.181 20 C -0.219 4.219 21 H 0.250 0.750 22 H 0.070 0.930 23 H 0.019 0.981 24 H 0.049 0.951 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 -6.222 11.040 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.229 4.229 3 Si 0.775 3.225 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.390 4.390 8 H 0.071 0.929 9 N -0.290 5.290 10 C 0.025 3.975 11 C -0.152 4.152 12 C -0.094 4.094 13 C -0.150 4.150 14 C -0.153 4.153 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.147 4.147 18 C -0.009 4.009 19 C -0.219 4.219 20 C -0.260 4.260 21 H 0.059 0.941 22 H 0.088 0.912 23 H 0.037 0.963 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.278 -6.066 11.000 12.565 hybrid contribution 0.289 1.256 -0.631 1.435 sum 0.011 -4.811 10.369 11.430 Atomic orbital electron populations 1.70179 1.06580 1.26249 1.52474 1.25824 0.95628 1.01221 1.00224 0.85618 0.78649 0.80624 0.77613 1.21200 1.21482 1.19716 1.19123 0.92999 0.86360 1.40518 0.92882 1.43635 1.51069 1.03418 1.30840 1.20917 0.90680 1.00836 0.85030 1.21974 0.98202 0.99689 0.95370 1.21035 0.97480 0.96471 0.94400 1.21539 0.98616 0.96830 0.98007 1.21522 0.97854 1.01255 0.94639 1.21528 0.99726 0.96990 0.97075 1.21516 0.98872 0.96990 0.97738 1.21554 0.97983 1.01073 0.94087 1.21551 1.01884 0.90524 0.86933 1.23001 0.91890 1.02190 1.04782 1.23244 0.97411 1.00822 1.04503 0.94094 0.91169 0.96260 0.93226 0.94769 0.91662 0.93861 0.94088 0.91776 0.92247 0.90613 0.92581 0.91641 0.90747 0.91644 0.92966 0.87315 0.90900 0.87064 0.88081 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.50 11.50 21.65 0.25 -53.25 16 2 C -0.03 -1.75 4.98 84.86 0.42 -1.33 16 3 Si 0.95 45.15 29.60 68.60 2.03 47.18 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.26 -14.35 8.47 84.03 0.71 -13.64 16 8 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 9 N -0.57 -28.98 2.75 -678.05 -1.86 -30.84 16 10 C 0.15 7.12 5.09 86.38 0.44 7.56 16 11 C -0.11 -4.43 5.01 30.59 0.15 -4.28 16 12 C -0.07 -2.40 2.19 -10.79 -0.02 -2.42 16 13 C -0.11 -3.78 4.96 30.60 0.15 -3.63 16 14 C -0.12 -3.01 5.92 30.60 0.18 -2.83 16 15 C -0.12 -2.51 5.92 30.60 0.18 -2.33 16 16 C -0.11 -2.39 5.92 30.59 0.18 -2.21 16 17 C -0.11 -2.84 5.20 30.59 0.16 -2.68 16 18 C 0.10 4.31 6.56 44.99 0.30 4.60 16 19 C -0.18 -7.11 9.80 30.59 0.30 -6.81 16 20 C -0.22 -9.10 10.36 30.59 0.32 -8.78 16 21 H 0.25 14.21 8.32 -92.71 -0.77 13.44 16 22 H 0.07 3.76 4.01 -2.39 -0.01 3.75 16 23 H 0.02 0.88 8.07 -2.39 -0.02 0.86 16 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.63 6.56 -2.39 -0.02 1.61 16 29 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 38 H 0.07 3.22 6.46 -2.39 -0.02 3.21 16 39 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 40 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.05 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -60.71 316.00 4.85 -55.87 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.96 Total: 19.83 kcal Atomic # 6 Polarization: -42.25 SS G_CDS: 3.47 Total: -38.78 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.61 Total: -84.10 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -60.71 4.85 -55.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361565699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.488 kcal (2) G-P(sol) polarization free energy of solvation -60.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds