Wall clock time and date at job start Sun Mar 29 2020 21:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00010 * 2 1 4 4 H 1.48503 * 109.47449 * 240.00391 * 3 2 1 5 5 H 1.48499 * 109.46940 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47176 * 120.00566 * 3 2 1 7 7 C 1.37878 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47110 * 180.02562 * 10 9 7 12 12 N 1.46908 * 109.47240 * 174.29421 * 11 10 9 13 13 C 1.46897 * 111.00041 * 196.86588 * 12 11 10 14 14 C 1.52994 * 109.47154 * 162.74441 * 13 12 11 15 15 C 1.53002 * 117.50029 * 186.14235 * 14 13 12 16 16 C 1.52999 * 60.00021 * 252.51477 * 15 14 13 17 17 C 1.46899 * 110.99939 * 72.91273 * 12 11 10 18 18 C 1.53779 * 113.61480 * 286.17742 * 17 12 11 19 19 C 1.53784 * 87.08127 * 220.01818 * 18 17 12 20 20 C 1.53774 * 113.61504 * 188.67773 * 17 12 11 21 21 H 0.97001 * 119.99492 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47067 * 60.00179 * 9 7 2 23 23 H 1.09001 * 109.47441 * 300.00336 * 9 7 2 24 24 H 1.09000 * 109.47067 * 60.00178 * 10 9 7 25 25 H 1.08998 * 109.47728 * 300.00128 * 10 9 7 26 26 H 1.08998 * 109.47046 * 54.29266 * 11 10 9 27 27 H 1.08999 * 109.47492 * 294.29224 * 11 10 9 28 28 H 1.09011 * 109.46952 * 42.74621 * 13 12 11 29 29 H 1.08998 * 109.47441 * 282.74856 * 13 12 11 30 30 H 1.09000 * 115.56511 * 331.84037 * 14 13 12 31 31 H 1.09004 * 117.49413 * 145.01985 * 15 14 13 32 32 H 1.09001 * 117.49646 * 0.02562 * 15 14 13 33 33 H 1.08998 * 117.49673 * 107.49319 * 16 15 14 34 34 H 1.09008 * 117.49650 * 252.48502 * 16 15 14 35 35 H 1.09009 * 112.84919 * 57.48350 * 17 12 11 36 36 H 1.08995 * 113.61617 * 334.56788 * 18 17 12 37 37 H 1.09010 * 113.61210 * 105.47250 * 18 17 12 38 38 H 1.08998 * 113.61590 * 270.88670 * 19 18 17 39 39 H 1.08998 * 113.61389 * 139.97798 * 19 18 17 40 40 H 1.08998 * 113.61890 * 254.53400 * 20 17 12 41 41 H 1.09001 * 113.61311 * 25.35399 * 20 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4291 -6.1002 -0.1389 13 6 1.7392 -7.3331 -0.5412 14 6 2.7600 -8.3341 -1.0859 15 6 2.2226 -9.6316 -1.6932 16 6 2.9237 -9.6563 -0.3335 17 6 3.1872 -6.3024 1.1030 18 6 4.2585 -5.2278 1.3527 19 6 5.1690 -6.3631 1.8497 20 6 4.3415 -7.3087 0.9632 21 1 -0.4849 0.8401 0.0004 22 1 0.6241 -2.5566 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8719 -3.6043 0.8895 25 1 2.8720 -3.6043 -0.8905 26 1 0.7795 -5.0015 -0.8359 27 1 0.9322 -5.0906 0.9352 28 1 1.0067 -7.1036 -1.3153 29 1 1.2325 -7.7643 0.3221 30 1 3.6513 -7.8984 -1.5375 31 1 2.7603 -10.0493 -2.5444 32 1 1.1417 -9.7717 -1.7050 33 1 2.3041 -9.8129 0.5494 34 1 3.9225 -10.0908 -0.2901 35 1 2.5461 -6.4902 1.9644 36 1 4.6164 -4.7481 0.4417 37 1 3.9875 -4.5134 2.1301 38 1 5.0707 -6.5667 2.9159 39 1 6.2064 -6.2621 1.5309 40 1 4.1375 -8.2743 1.4260 41 1 4.7211 -7.3990 -0.0546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361588208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:48 Heat of formation + Delta-G solvation = 34.651339 kcal Electronic energy + Delta-G solvation = -17218.907189 eV Core-core repulsion = 14713.759009 eV Total energy + Delta-G solvation = -2505.148179 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.58332 -37.07882 -35.22521 -33.31277 -31.19967 -27.42269 -25.81469 -25.24847 -23.97975 -22.37335 -21.74690 -20.43455 -19.74649 -19.08582 -16.28116 -16.04675 -15.56394 -15.22796 -14.59960 -14.42399 -14.09661 -13.55104 -13.06264 -12.70925 -12.24779 -12.14889 -11.83337 -11.61707 -11.55651 -11.36289 -11.31761 -10.86506 -10.76790 -10.54953 -10.45537 -10.30423 -10.16147 -10.00785 -9.68281 -9.41478 -9.15320 -9.00634 -8.28325 -8.02288 -5.94315 -3.95940 3.37011 3.40966 3.43818 3.76127 4.12413 4.51287 4.76740 4.80958 4.85975 4.93227 5.00552 5.11107 5.21419 5.41451 5.42965 5.54399 5.58430 5.68068 5.77832 5.82637 5.86160 5.90798 6.02023 6.03104 6.07297 6.08893 6.24530 6.33150 6.42108 6.48666 6.60071 6.81948 6.91642 7.24939 7.48296 7.53624 7.75455 7.92218 8.07110 8.50855 9.11325 9.67658 11.17210 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.034601 B = 0.004950 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.039555 B = 5655.776988 C = 6222.259112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.108 4.108 11 C 0.057 3.943 12 N -0.526 5.526 13 C 0.085 3.915 14 C -0.133 4.133 15 C -0.186 4.186 16 C -0.182 4.182 17 C 0.059 3.941 18 C -0.122 4.122 19 C -0.150 4.150 20 C -0.123 4.123 21 H 0.260 0.740 22 H 0.014 0.986 23 H 0.012 0.988 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.026 0.974 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.456 -17.918 0.830 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.070 4.070 12 N -0.250 5.250 13 C -0.043 4.043 14 C -0.152 4.152 15 C -0.223 4.223 16 C -0.219 4.219 17 C -0.050 4.050 18 C -0.160 4.160 19 C -0.188 4.188 20 C -0.161 4.161 21 H 0.069 0.931 22 H 0.032 0.968 23 H 0.030 0.970 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.130 0.870 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.617 -17.670 0.462 18.874 hybrid contribution -0.293 0.720 0.663 1.022 sum 6.324 -16.950 1.125 18.126 Atomic orbital electron populations 1.69961 1.06057 1.26560 1.51157 1.25023 0.94819 0.99176 0.95476 0.86680 0.79588 0.83255 0.78602 1.20244 1.21361 1.20296 1.21219 0.92986 0.91063 1.50159 0.92763 1.19081 0.94110 0.91560 0.96883 1.21794 0.99231 0.92410 1.01173 1.22294 0.93816 0.91369 0.99543 1.62276 1.27131 1.04394 1.31208 1.21626 0.94307 0.89850 0.98547 1.22382 1.01473 0.88392 1.02925 1.22990 1.00376 1.02238 0.96741 1.23034 1.01627 1.01919 0.95342 1.23097 0.93497 0.97662 0.90731 1.23052 0.95347 0.95850 1.01754 1.22834 0.98718 0.98063 0.99226 1.23084 0.96058 0.96537 1.00422 0.93060 0.96811 0.97009 0.92561 0.92768 0.91517 0.95549 0.90744 0.95155 0.86970 0.89048 0.89163 0.89322 0.89158 0.92575 0.88840 0.91443 0.90850 0.91589 0.92155 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.29 4.35 -26.73 -0.12 -2.41 16 11 C 0.06 1.02 4.98 -3.82 -0.02 1.00 16 12 N -0.53 -8.01 4.46 -225.67 -1.01 -9.01 16 13 C 0.08 1.10 5.25 -3.83 -0.02 1.08 16 14 C -0.13 -1.47 3.89 -90.62 -0.35 -1.82 16 15 C -0.19 -1.76 10.25 -26.73 -0.27 -2.03 16 16 C -0.18 -1.72 8.39 -26.73 -0.22 -1.94 16 17 C 0.06 0.82 3.04 -66.91 -0.20 0.62 16 18 C -0.12 -1.75 5.37 -25.92 -0.14 -1.89 16 19 C -0.15 -1.74 8.08 -25.92 -0.21 -1.95 16 20 C -0.12 -1.43 5.48 -25.92 -0.14 -1.57 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 1.16 5.14 -51.93 -0.27 0.90 16 25 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.20 7.69 -51.93 -0.40 0.81 16 27 H 0.03 0.48 8.04 -51.93 -0.42 0.06 16 28 H 0.07 0.98 7.69 -51.92 -0.40 0.58 16 29 H 0.03 0.39 7.76 -51.93 -0.40 -0.01 16 30 H 0.11 1.34 6.95 -51.93 -0.36 0.97 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 34 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.09 1.46 7.65 -51.93 -0.40 1.07 16 37 H 0.07 1.03 7.40 -51.92 -0.38 0.64 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.64 7.06 -51.93 -0.37 0.27 16 41 H 0.09 1.05 6.28 -51.93 -0.33 0.73 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -29.65 316.26 -10.26 -39.91 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.48 Total: -1.76 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -2.25 Total: -24.17 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.27 Total: -35.72 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.65 -10.26 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361588208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.561 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds