Wall clock time and date at job start Sun Mar 29 2020 21:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00010 * 2 1 4 4 H 1.48503 * 109.47449 * 240.00391 * 3 2 1 5 5 H 1.48499 * 109.46940 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47176 * 120.00566 * 3 2 1 7 7 C 1.37878 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47110 * 180.02562 * 10 9 7 12 12 N 1.46908 * 109.47240 * 174.29421 * 11 10 9 13 13 C 1.46897 * 111.00041 * 196.86588 * 12 11 10 14 14 C 1.52994 * 109.47154 * 162.74441 * 13 12 11 15 15 C 1.53002 * 117.50029 * 186.14235 * 14 13 12 16 16 C 1.52999 * 60.00021 * 252.51477 * 15 14 13 17 17 C 1.46899 * 110.99939 * 72.91273 * 12 11 10 18 18 C 1.53779 * 113.61480 * 286.17742 * 17 12 11 19 19 C 1.53784 * 87.08127 * 220.01818 * 18 17 12 20 20 C 1.53774 * 113.61504 * 188.67773 * 17 12 11 21 21 H 0.97001 * 119.99492 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47067 * 60.00179 * 9 7 2 23 23 H 1.09001 * 109.47441 * 300.00336 * 9 7 2 24 24 H 1.09000 * 109.47067 * 60.00178 * 10 9 7 25 25 H 1.08998 * 109.47728 * 300.00128 * 10 9 7 26 26 H 1.08998 * 109.47046 * 54.29266 * 11 10 9 27 27 H 1.08999 * 109.47492 * 294.29224 * 11 10 9 28 28 H 1.09011 * 109.46952 * 42.74621 * 13 12 11 29 29 H 1.08998 * 109.47441 * 282.74856 * 13 12 11 30 30 H 1.09000 * 115.56511 * 331.84037 * 14 13 12 31 31 H 1.09004 * 117.49413 * 145.01985 * 15 14 13 32 32 H 1.09001 * 117.49646 * 0.02562 * 15 14 13 33 33 H 1.08998 * 117.49673 * 107.49319 * 16 15 14 34 34 H 1.09008 * 117.49650 * 252.48502 * 16 15 14 35 35 H 1.09009 * 112.84919 * 57.48350 * 17 12 11 36 36 H 1.08995 * 113.61617 * 334.56788 * 18 17 12 37 37 H 1.09010 * 113.61210 * 105.47250 * 18 17 12 38 38 H 1.08998 * 113.61590 * 270.88670 * 19 18 17 39 39 H 1.08998 * 113.61389 * 139.97798 * 19 18 17 40 40 H 1.08998 * 113.61890 * 254.53400 * 20 17 12 41 41 H 1.09001 * 113.61311 * 25.35399 * 20 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 7 2.4291 -6.1002 -0.1389 13 6 1.7392 -7.3331 -0.5412 14 6 2.7600 -8.3341 -1.0859 15 6 2.2226 -9.6316 -1.6932 16 6 2.9237 -9.6563 -0.3335 17 6 3.1872 -6.3024 1.1030 18 6 4.2585 -5.2278 1.3527 19 6 5.1690 -6.3631 1.8497 20 6 4.3415 -7.3087 0.9632 21 1 -0.4849 0.8401 0.0004 22 1 0.6241 -2.5566 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8719 -3.6043 0.8895 25 1 2.8720 -3.6043 -0.8905 26 1 0.7795 -5.0015 -0.8359 27 1 0.9322 -5.0906 0.9352 28 1 1.0067 -7.1036 -1.3153 29 1 1.2325 -7.7643 0.3221 30 1 3.6513 -7.8984 -1.5375 31 1 2.7603 -10.0493 -2.5444 32 1 1.1417 -9.7717 -1.7050 33 1 2.3041 -9.8129 0.5494 34 1 3.9225 -10.0908 -0.2901 35 1 2.5461 -6.4902 1.9644 36 1 4.6164 -4.7481 0.4417 37 1 3.9875 -4.5134 2.1301 38 1 5.0707 -6.5667 2.9159 39 1 6.2064 -6.2621 1.5309 40 1 4.1375 -8.2743 1.4260 41 1 4.7211 -7.3990 -0.0546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361588208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:48 Heat of formation + Delta-G solvation = 18.666714 kcal Electronic energy + Delta-G solvation = -17219.600334 eV Core-core repulsion = 14713.759009 eV Total energy + Delta-G solvation = -2505.841325 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68222 -37.94407 -36.68982 -35.20155 -33.06386 -29.05604 -27.11128 -26.34038 -25.53262 -23.37364 -23.09175 -21.66315 -21.14123 -20.16962 -18.45886 -17.11893 -16.77060 -16.62188 -16.20372 -15.59634 -15.20212 -15.08083 -14.44629 -14.05784 -13.73876 -13.60403 -13.22573 -13.21018 -12.69210 -12.63031 -12.52658 -12.48891 -12.28018 -12.07298 -11.81828 -11.58758 -11.38507 -11.22827 -11.18010 -10.89374 -10.78939 -10.57228 -10.51825 -9.26841 -8.19138 -6.30112 1.39714 1.43231 1.51107 2.41422 2.87857 3.05576 3.13790 3.73125 3.88988 3.90590 4.01751 4.08366 4.10766 4.22313 4.30245 4.39649 4.50441 4.63937 4.73696 4.77959 4.84851 4.86857 4.92751 4.98874 5.02841 5.07894 5.10967 5.14867 5.18402 5.28763 5.33332 5.42228 5.43898 5.54326 5.58417 5.77486 5.87765 6.15362 6.30599 6.33687 6.86462 7.38947 8.92775 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.034601 B = 0.004950 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.039555 B = 5655.776988 C = 6222.259112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.090 4.090 11 C 0.067 3.933 12 N -0.530 5.530 13 C 0.086 3.914 14 C -0.146 4.146 15 C -0.179 4.179 16 C -0.170 4.170 17 C 0.050 3.950 18 C -0.134 4.134 19 C -0.137 4.137 20 C -0.107 4.107 21 H 0.263 0.737 22 H -0.012 1.012 23 H -0.013 1.013 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.021 0.979 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.109 -19.101 1.028 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.579 4.579 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.128 4.128 11 C -0.060 4.060 12 N -0.254 5.254 13 C -0.042 4.042 14 C -0.165 4.165 15 C -0.216 4.216 16 C -0.206 4.206 17 C -0.058 4.058 18 C -0.171 4.171 19 C -0.175 4.175 20 C -0.144 4.144 21 H 0.072 0.928 22 H 0.007 0.993 23 H 0.005 0.995 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.282 -18.877 0.659 20.624 hybrid contribution -0.852 1.068 0.598 1.492 sum 7.430 -17.809 1.257 19.337 Atomic orbital electron populations 1.70099 1.07840 1.27784 1.51807 1.25989 0.95761 1.03356 0.94717 0.85507 0.78296 0.78071 0.79223 1.19159 1.20740 1.19126 1.21642 0.93461 0.92341 1.50412 0.92322 1.18987 0.94453 0.93380 0.94385 1.21529 0.97955 0.92325 1.00999 1.22012 0.93751 0.91190 0.99086 1.62235 1.26477 1.04611 1.32028 1.21656 0.94835 0.89235 0.98463 1.22192 1.00957 0.88646 1.04664 1.23070 1.00770 1.00451 0.97358 1.23089 1.02378 0.99877 0.95302 1.23238 0.93780 0.98775 0.90037 1.23049 0.96867 0.96470 1.00763 1.22802 0.98790 0.95967 0.99961 1.22983 0.94171 0.96650 1.00626 0.92800 0.99344 0.99463 0.92125 0.93367 0.92027 0.96073 0.91435 0.94861 0.87693 0.87921 0.88936 0.89126 0.87777 0.92930 0.90489 0.93016 0.89587 0.90402 0.90430 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.94 4.35 30.59 0.13 -3.81 16 11 C 0.07 2.49 4.98 86.30 0.43 2.92 16 12 N -0.53 -16.02 4.46 -867.90 -3.87 -19.89 16 13 C 0.09 2.16 5.25 86.30 0.45 2.61 16 14 C -0.15 -2.96 3.89 -10.79 -0.04 -3.01 16 15 C -0.18 -2.96 10.25 30.59 0.31 -2.64 16 16 C -0.17 -2.70 8.39 30.59 0.26 -2.44 16 17 C 0.05 1.36 3.04 45.44 0.14 1.50 16 18 C -0.13 -3.78 5.37 31.12 0.17 -3.61 16 19 C -0.14 -2.88 8.08 31.12 0.25 -2.63 16 20 C -0.11 -2.22 5.48 31.12 0.17 -2.05 16 21 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 22 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 23 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 24 H 0.06 2.58 5.14 -2.39 -0.01 2.57 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.06 2.31 7.69 -2.39 -0.02 2.29 16 27 H 0.02 0.79 8.04 -2.39 -0.02 0.77 16 28 H 0.07 1.77 7.69 -2.38 -0.02 1.75 16 29 H 0.03 0.82 7.76 -2.39 -0.02 0.80 16 30 H 0.11 2.32 6.95 -2.39 -0.02 2.31 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.44 8.03 -2.39 -0.02 1.42 16 34 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.08 2.42 7.65 -2.39 -0.02 2.40 16 37 H 0.05 1.59 7.40 -2.38 -0.02 1.57 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.38 7.06 -2.39 -0.02 1.36 16 41 H 0.09 1.90 6.28 -2.39 -0.01 1.88 16 Total: -1.00 -64.19 316.26 2.52 -61.68 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.96 Total: 11.78 kcal Atomic # 6 Polarization: -45.91 SS G_CDS: 3.12 Total: -42.79 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -3.59 Total: -77.91 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.19 2.52 -61.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361588208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.342 kcal (2) G-P(sol) polarization free energy of solvation -64.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds