Wall clock time and date at job start Sun Mar 29 2020 21:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48503 * 109.46890 * 264.71469 * 3 2 1 5 5 H 1.48499 * 109.47099 * 24.71431 * 3 2 1 6 6 H 1.48501 * 109.47129 * 144.71801 * 3 2 1 7 7 C 1.38811 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00148 * 339.57746 * 7 2 1 9 9 N 1.36939 * 119.99778 * 159.57348 * 7 2 1 10 10 C 1.47424 * 125.65201 * 334.97017 * 9 7 2 11 11 C 1.54906 * 104.92959 * 204.04890 * 10 9 7 12 12 C 1.55273 * 101.53061 * 323.12982 * 11 10 9 13 13 C 1.47021 * 125.64670 * 154.94365 * 9 7 2 14 14 H 1.09000 * 109.88454 * 59.54639 * 13 9 7 15 15 C 1.53008 * 109.88431 * 298.53601 * 13 9 7 16 16 C 1.53005 * 109.46885 * 66.67898 * 15 13 9 17 17 C 1.52998 * 109.46756 * 174.47407 * 16 15 13 18 18 C 1.54266 * 110.03706 * 292.90821 * 17 16 15 19 19 C 1.54961 * 104.15795 * 217.13685 * 18 17 16 20 20 C 1.54891 * 102.77843 * 37.88923 * 19 18 17 21 21 C 1.53873 * 110.03001 * 175.68691 * 17 16 15 22 22 H 0.96998 * 119.99977 * 359.97438 * 1 2 3 23 23 H 1.08995 * 110.36646 * 322.94703 * 10 9 7 24 24 H 1.09002 * 110.36496 * 85.15471 * 10 9 7 25 25 H 1.08996 * 111.00164 * 81.12241 * 11 10 9 26 26 H 1.08998 * 111.00408 * 204.96886 * 11 10 9 27 27 H 1.09007 * 110.62190 * 277.00986 * 12 11 10 28 28 H 1.08994 * 110.75857 * 153.77663 * 12 11 10 29 29 H 1.08998 * 109.47263 * 186.67629 * 15 13 9 30 30 H 1.08997 * 109.46840 * 306.68188 * 15 13 9 31 31 H 1.08996 * 109.46810 * 294.47576 * 16 15 13 32 32 H 1.08999 * 109.47195 * 54.47676 * 16 15 13 33 33 H 1.09006 * 110.01603 * 54.30120 * 17 16 15 34 34 H 1.08999 * 110.48303 * 335.78869 * 18 17 16 35 35 H 1.08996 * 110.48408 * 98.42633 * 18 17 16 36 36 H 1.08995 * 110.72245 * 279.56939 * 19 18 17 37 37 H 1.09004 * 110.91676 * 156.29555 * 19 18 17 38 38 H 1.09001 * 110.48610 * 203.40333 * 20 19 18 39 39 H 1.09000 * 110.48749 * 80.75947 * 20 19 18 40 40 H 1.08999 * 110.03946 * 238.57136 * 21 17 16 41 41 H 1.09004 * 110.03318 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6094 1.9819 -1.3942 5 1 1.3963 2.6823 0.5854 6 1 3.4875 1.4750 0.8087 7 6 2.0102 -1.2022 0.0005 8 1 1.5211 -2.1079 0.3273 9 7 3.3150 -1.2396 -0.4134 10 6 3.9510 -0.2835 -1.3379 11 6 5.1430 -1.0572 -1.9544 12 6 5.6279 -1.8976 -0.7422 13 6 4.3139 -2.2397 -0.0089 14 1 3.9779 -3.2362 -0.2957 15 6 4.5279 -2.1788 1.5049 16 6 3.2520 -2.6298 2.2189 17 6 3.5088 -2.7009 3.7255 18 6 4.5101 -3.8320 4.0382 19 6 3.9985 -4.4333 5.3716 20 6 2.4597 -4.3798 5.2035 21 6 2.2057 -3.0487 4.4664 22 1 -0.4850 0.8400 0.0004 23 1 3.2492 0.0154 -2.1164 24 1 4.3073 0.5910 -0.7933 25 1 4.8112 -1.7020 -2.7681 26 1 5.9202 -0.3721 -2.2931 27 1 6.2836 -1.3063 -0.1028 28 1 6.1301 -2.8050 -1.0773 29 1 5.3513 -2.8368 1.7823 30 1 4.7657 -1.1560 1.7973 31 1 2.4527 -1.9160 2.0198 32 1 2.9596 -3.6141 1.8533 33 1 3.8985 -1.7478 4.0830 34 1 4.4942 -4.5843 3.2496 35 1 5.5151 -3.4285 4.1614 36 1 4.3162 -3.8229 6.2169 37 1 4.3387 -5.4620 5.4905 38 1 1.9695 -4.3764 6.1770 39 1 2.1121 -5.2207 4.6032 40 1 1.9635 -2.2649 5.1841 41 1 1.3905 -3.1672 3.7525 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362953107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:31 Heat of formation + Delta-G solvation = -8.253174 kcal Electronic energy + Delta-G solvation = -17880.542839 eV Core-core repulsion = 15373.534180 eV Total energy + Delta-G solvation = -2507.008659 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.52845 -37.53348 -32.75296 -32.53933 -29.85988 -28.99984 -28.38078 -25.56219 -24.25492 -21.96073 -20.69777 -20.39041 -19.19356 -18.87735 -16.74716 -15.54799 -15.47327 -15.04651 -14.67765 -13.75143 -13.28994 -13.09926 -12.94991 -12.73817 -12.41905 -12.08194 -11.64321 -11.32736 -11.12718 -10.94564 -10.89702 -10.79069 -10.77184 -10.57331 -10.42836 -10.37502 -10.14421 -9.93206 -9.86606 -9.66322 -9.46164 -9.20054 -8.51668 -6.88499 -5.90046 -3.21467 3.39341 3.51634 3.55668 4.60406 4.88521 4.93620 5.00491 5.08152 5.28997 5.41161 5.45283 5.63544 5.70741 5.71488 5.80291 5.85518 5.93133 5.98204 6.03801 6.08424 6.12269 6.13971 6.21890 6.30527 6.36517 6.39001 6.47538 6.51842 6.54490 6.58249 6.71892 6.77219 6.86289 6.89666 6.96810 7.21692 7.44292 7.89083 8.38570 8.91832 9.75533 10.30345 11.26122 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.008444 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.603533 B = 3315.186183 C = 4152.019801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.305 1.305 6 H -0.276 1.276 7 C -0.230 4.230 8 H 0.093 0.907 9 N -0.603 5.603 10 C 0.114 3.886 11 C -0.133 4.133 12 C -0.128 4.128 13 C 0.157 3.843 14 H 0.040 0.960 15 C -0.118 4.118 16 C -0.117 4.117 17 C -0.091 4.091 18 C -0.117 4.117 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.122 4.122 22 H 0.262 0.738 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.933 -6.303 5.599 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.214 1.214 5 H -0.233 1.233 6 H -0.202 1.202 7 C -0.357 4.357 8 H 0.110 0.890 9 N -0.328 5.328 10 C -0.011 4.011 11 C -0.171 4.171 12 C -0.166 4.166 13 C 0.051 3.949 14 H 0.057 0.943 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.109 4.109 18 C -0.155 4.155 19 C -0.164 4.164 20 C -0.161 4.161 21 C -0.159 4.159 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.673 -6.208 5.627 12.798 hybrid contribution 0.463 1.128 0.097 1.223 sum 10.136 -5.080 5.724 12.701 Atomic orbital electron populations 1.69819 1.05548 1.26444 1.53611 1.25133 0.95127 0.97317 1.00004 0.86936 0.79233 0.84878 0.77750 1.21425 1.23268 1.20216 1.18569 0.83347 0.94707 1.39065 0.89003 1.44858 1.07581 1.30321 1.50085 1.21884 0.93607 0.92798 0.92841 1.22735 0.98027 0.98896 0.97460 1.22629 0.97469 0.99308 0.97155 1.21070 0.88176 0.93535 0.92141 0.94266 1.21956 0.96906 1.00003 0.96818 1.21954 0.99908 1.02113 0.91438 1.21811 0.94383 0.97682 0.97065 1.22467 0.98388 0.98034 0.96615 1.22513 0.95896 0.99993 0.97951 1.22350 0.95818 0.98249 0.99697 1.22212 0.98433 0.96332 0.98945 0.92841 0.92803 0.96238 0.91486 0.92079 0.91921 0.91955 0.93852 0.92958 0.87892 0.93296 0.91941 0.91682 0.92441 0.92094 0.92320 0.92423 0.91927 0.92495 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.87 13.97 55.49 0.78 -27.10 16 2 C 0.02 0.66 5.45 -17.43 -0.09 0.56 16 3 Si 0.88 22.90 24.35 -169.99 -4.14 18.76 16 4 H -0.29 -7.28 6.73 56.52 0.38 -6.90 16 5 H -0.30 -8.05 7.11 56.52 0.40 -7.64 16 6 H -0.28 -7.13 6.79 56.52 0.38 -6.75 16 7 C -0.23 -6.30 7.88 -15.06 -0.12 -6.41 16 8 H 0.09 2.67 7.22 -52.49 -0.38 2.29 16 9 N -0.60 -14.36 2.85 -162.57 -0.46 -14.83 16 10 C 0.11 2.52 4.75 -2.53 -0.01 2.50 16 11 C -0.13 -2.29 7.10 -24.52 -0.17 -2.47 16 12 C -0.13 -2.10 6.48 -24.83 -0.16 -2.26 16 13 C 0.16 3.10 3.24 -66.95 -0.22 2.88 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.12 -2.16 4.67 -26.72 -0.12 -2.28 16 16 C -0.12 -2.20 3.55 -26.73 -0.09 -2.29 16 17 C -0.09 -1.45 2.93 -89.50 -0.26 -1.71 16 18 C -0.12 -1.58 5.42 -25.03 -0.14 -1.72 16 19 C -0.13 -1.51 6.91 -24.70 -0.17 -1.68 16 20 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16 21 C -0.12 -1.85 6.46 -25.61 -0.17 -2.01 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.05 1.27 7.29 -51.93 -0.38 0.89 16 24 H 0.02 0.46 5.43 -51.93 -0.28 0.18 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.99 7.86 -51.92 -0.41 0.58 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.69 7.33 -51.93 -0.38 0.31 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 2.36 5.28 -51.93 -0.27 2.09 16 32 H 0.05 0.91 8.02 -51.93 -0.42 0.50 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.89 7.77 -51.93 -0.40 0.49 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 LS Contribution 303.33 15.07 4.57 4.57 Total: -1.00 -29.33 303.33 -8.73 -38.06 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.57 Total: -0.84 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -1.90 Total: -18.64 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.31 Total: -41.92 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.14 Total: 18.76 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.33 -8.73 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362953107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.809 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds