Wall clock time and date at job start Sun Mar 29 2020 21:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48503 * 109.46890 * 264.71469 * 3 2 1 5 5 H 1.48499 * 109.47099 * 24.71431 * 3 2 1 6 6 H 1.48501 * 109.47129 * 144.71801 * 3 2 1 7 7 C 1.38811 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00148 * 339.57746 * 7 2 1 9 9 N 1.36939 * 119.99778 * 159.57348 * 7 2 1 10 10 C 1.47424 * 125.65201 * 334.97017 * 9 7 2 11 11 C 1.54906 * 104.92959 * 204.04890 * 10 9 7 12 12 C 1.55273 * 101.53061 * 323.12982 * 11 10 9 13 13 C 1.47021 * 125.64670 * 154.94365 * 9 7 2 14 14 H 1.09000 * 109.88454 * 59.54639 * 13 9 7 15 15 C 1.53008 * 109.88431 * 298.53601 * 13 9 7 16 16 C 1.53005 * 109.46885 * 66.67898 * 15 13 9 17 17 C 1.52998 * 109.46756 * 174.47407 * 16 15 13 18 18 C 1.54266 * 110.03706 * 292.90821 * 17 16 15 19 19 C 1.54961 * 104.15795 * 217.13685 * 18 17 16 20 20 C 1.54891 * 102.77843 * 37.88923 * 19 18 17 21 21 C 1.53873 * 110.03001 * 175.68691 * 17 16 15 22 22 H 0.96998 * 119.99977 * 359.97438 * 1 2 3 23 23 H 1.08995 * 110.36646 * 322.94703 * 10 9 7 24 24 H 1.09002 * 110.36496 * 85.15471 * 10 9 7 25 25 H 1.08996 * 111.00164 * 81.12241 * 11 10 9 26 26 H 1.08998 * 111.00408 * 204.96886 * 11 10 9 27 27 H 1.09007 * 110.62190 * 277.00986 * 12 11 10 28 28 H 1.08994 * 110.75857 * 153.77663 * 12 11 10 29 29 H 1.08998 * 109.47263 * 186.67629 * 15 13 9 30 30 H 1.08997 * 109.46840 * 306.68188 * 15 13 9 31 31 H 1.08996 * 109.46810 * 294.47576 * 16 15 13 32 32 H 1.08999 * 109.47195 * 54.47676 * 16 15 13 33 33 H 1.09006 * 110.01603 * 54.30120 * 17 16 15 34 34 H 1.08999 * 110.48303 * 335.78869 * 18 17 16 35 35 H 1.08996 * 110.48408 * 98.42633 * 18 17 16 36 36 H 1.08995 * 110.72245 * 279.56939 * 19 18 17 37 37 H 1.09004 * 110.91676 * 156.29555 * 19 18 17 38 38 H 1.09001 * 110.48610 * 203.40333 * 20 19 18 39 39 H 1.09000 * 110.48749 * 80.75947 * 20 19 18 40 40 H 1.08999 * 110.03946 * 238.57136 * 21 17 16 41 41 H 1.09004 * 110.03318 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6094 1.9819 -1.3942 5 1 1.3963 2.6823 0.5854 6 1 3.4875 1.4750 0.8087 7 6 2.0102 -1.2022 0.0005 8 1 1.5211 -2.1079 0.3273 9 7 3.3150 -1.2396 -0.4134 10 6 3.9510 -0.2835 -1.3379 11 6 5.1430 -1.0572 -1.9544 12 6 5.6279 -1.8976 -0.7422 13 6 4.3139 -2.2397 -0.0089 14 1 3.9779 -3.2362 -0.2957 15 6 4.5279 -2.1788 1.5049 16 6 3.2520 -2.6298 2.2189 17 6 3.5088 -2.7009 3.7255 18 6 4.5101 -3.8320 4.0382 19 6 3.9985 -4.4333 5.3716 20 6 2.4597 -4.3798 5.2035 21 6 2.2057 -3.0487 4.4664 22 1 -0.4850 0.8400 0.0004 23 1 3.2492 0.0154 -2.1164 24 1 4.3073 0.5910 -0.7933 25 1 4.8112 -1.7020 -2.7681 26 1 5.9202 -0.3721 -2.2931 27 1 6.2836 -1.3063 -0.1028 28 1 6.1301 -2.8050 -1.0773 29 1 5.3513 -2.8368 1.7823 30 1 4.7657 -1.1560 1.7973 31 1 2.4527 -1.9160 2.0198 32 1 2.9596 -3.6141 1.8533 33 1 3.8985 -1.7478 4.0830 34 1 4.4942 -4.5843 3.2496 35 1 5.5151 -3.4285 4.1614 36 1 4.3162 -3.8229 6.2169 37 1 4.3387 -5.4620 5.4905 38 1 1.9695 -4.3764 6.1770 39 1 2.1121 -5.2207 4.6032 40 1 1.9635 -2.2649 5.1841 41 1 1.3905 -3.1672 3.7525 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362953107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:30 Heat of formation + Delta-G solvation = -24.476988 kcal Electronic energy + Delta-G solvation = -17881.246356 eV Core-core repulsion = 15373.534180 eV Total energy + Delta-G solvation = -2507.712176 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.99950 -38.90485 -34.61336 -34.16356 -31.74628 -30.37815 -29.51263 -26.99726 -26.16707 -23.59239 -22.13766 -21.47289 -20.79419 -20.26609 -18.76198 -17.25439 -16.94031 -16.61266 -15.87826 -15.23513 -15.02807 -14.90995 -14.32318 -14.16663 -13.90676 -13.76978 -13.12769 -13.06712 -12.83874 -12.60945 -12.33463 -12.18113 -12.00166 -11.92000 -11.85470 -11.79117 -11.58535 -11.44012 -11.34573 -11.24401 -11.06840 -10.80547 -10.61332 -8.89145 -8.13618 -5.39773 1.28270 1.35858 1.44900 2.43536 3.10876 3.38018 3.74599 3.82861 3.85140 3.96996 4.04390 4.21343 4.33018 4.49554 4.55647 4.57929 4.61164 4.72643 4.78555 4.80782 4.86769 4.93255 4.96443 4.98679 5.00808 5.09365 5.12594 5.17969 5.23140 5.27683 5.35647 5.40718 5.50117 5.50491 5.57065 5.70063 5.77655 5.87869 6.17985 6.86422 7.61588 8.22114 9.06957 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022528 B = 0.008444 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.603533 B = 3315.186183 C = 4152.019801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.038 4.038 3 Si 0.938 3.062 4 H -0.276 1.276 5 H -0.313 1.313 6 H -0.273 1.273 7 C -0.201 4.201 8 H 0.062 0.938 9 N -0.620 5.620 10 C 0.102 3.898 11 C -0.121 4.121 12 C -0.116 4.116 13 C 0.145 3.855 14 H 0.034 0.966 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.091 4.091 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.127 4.127 22 H 0.258 0.742 23 H 0.032 0.968 24 H 0.014 0.986 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.458 -7.296 6.018 16.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.232 4.232 3 Si 0.769 3.231 4 H -0.203 1.203 5 H -0.242 1.242 6 H -0.199 1.199 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.346 5.346 10 C -0.023 4.023 11 C -0.159 4.159 12 C -0.154 4.154 13 C 0.040 3.960 14 H 0.052 0.948 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.109 4.109 18 C -0.150 4.150 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.165 4.165 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.032 0.968 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.254 -7.215 6.037 16.254 hybrid contribution -0.648 1.330 -0.048 1.481 sum 12.606 -5.885 5.989 15.147 Atomic orbital electron populations 1.69938 1.07027 1.26736 1.57080 1.25661 0.95676 1.00212 1.01629 0.86000 0.77801 0.81254 0.78084 1.20271 1.24172 1.19866 1.18440 0.85003 0.93367 1.36186 0.92084 1.45040 1.07250 1.31456 1.50857 1.22019 0.95103 0.93071 0.92076 1.22707 0.96468 0.99003 0.97693 1.22632 0.95541 1.00906 0.96328 1.21356 0.89080 0.92054 0.93549 0.94786 1.21865 0.97445 0.99755 0.95723 1.21755 0.98787 1.00094 0.94028 1.21779 0.95635 0.98766 0.94734 1.22422 0.98121 0.96825 0.97605 1.22500 0.94570 1.01323 0.97228 1.22341 0.97139 0.96284 0.99997 1.22231 0.97344 0.98265 0.98623 0.93266 0.95001 0.96831 0.90785 0.88783 0.90586 0.88470 0.90258 0.94537 0.92969 0.93935 0.92632 0.91680 0.91005 0.91111 0.90225 0.90891 0.91946 0.92477 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.79 13.97 21.65 0.30 -61.48 16 2 C -0.04 -2.28 5.45 84.86 0.46 -1.82 16 3 Si 0.94 48.77 24.35 68.60 1.67 50.44 16 4 H -0.28 -13.69 6.73 99.48 0.67 -13.02 16 5 H -0.31 -16.53 7.11 99.48 0.71 -15.82 16 6 H -0.27 -13.82 6.79 99.48 0.68 -13.14 16 7 C -0.20 -11.47 7.88 84.03 0.66 -10.81 16 8 H 0.06 3.80 7.22 -2.91 -0.02 3.78 16 9 N -0.62 -29.60 2.85 -668.26 -1.91 -31.50 16 10 C 0.10 4.38 4.75 86.85 0.41 4.79 16 11 C -0.12 -3.71 7.10 32.03 0.23 -3.48 16 12 C -0.12 -3.33 6.48 31.82 0.21 -3.12 16 13 C 0.14 5.47 3.24 45.34 0.15 5.62 16 14 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 15 C -0.11 -3.83 4.67 30.60 0.14 -3.69 16 16 C -0.11 -4.18 3.55 30.60 0.11 -4.07 16 17 C -0.09 -2.85 2.93 -10.07 -0.03 -2.88 16 18 C -0.11 -2.72 5.42 31.69 0.17 -2.55 16 19 C -0.12 -2.46 6.91 31.91 0.22 -2.24 16 20 C -0.12 -2.87 6.83 31.67 0.22 -2.65 16 21 C -0.13 -3.92 6.46 31.32 0.20 -3.72 16 22 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 23 H 0.03 1.48 7.29 -2.39 -0.02 1.47 16 24 H 0.01 0.62 5.43 -2.39 -0.01 0.61 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.08 2.02 7.86 -2.38 -0.02 2.00 16 28 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.08 2.24 7.33 -2.39 -0.02 2.23 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 2.54 5.28 -2.39 -0.01 2.52 16 32 H 0.04 1.63 8.02 -2.39 -0.02 1.62 16 33 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.06 1.59 7.77 -2.39 -0.02 1.57 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.04 1.50 7.67 -2.38 -0.02 1.48 16 Total: -1.00 -66.80 303.33 4.11 -62.69 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.89 Total: 10.48 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.15 Total: -30.62 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -1.60 Total: -92.99 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 1.67 Total: 50.44 kcal Total: -66.80 4.11 -62.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362953107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.212 kcal (2) G-P(sol) polarization free energy of solvation -66.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds