Wall clock time and date at job start Sun Mar 29 2020 22:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00257 * 2 1 4 4 H 1.48505 * 109.47043 * 269.99267 * 3 2 1 5 5 H 1.48491 * 109.47197 * 29.99670 * 3 2 1 6 6 H 1.48498 * 109.47140 * 149.99966 * 3 2 1 7 7 C 1.37879 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99760 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00114 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46744 * 180.02562 * 10 9 7 12 12 N 1.46908 * 109.46860 * 179.97438 * 11 10 9 13 13 C 1.48533 * 110.99931 * 52.60238 * 12 11 10 14 14 C 1.54932 * 103.22639 * 159.72180 * 13 12 11 15 15 C 1.54599 * 102.92266 * 322.58583 * 14 13 12 16 16 C 1.47896 * 111.00168 * 169.99958 * 12 11 10 17 17 H 1.08999 * 110.08025 * 333.60533 * 16 12 11 18 18 C 1.53006 * 109.91828 * 94.80145 * 16 12 11 19 19 C 1.53780 * 113.61448 * 278.18514 * 18 16 12 20 20 C 1.53948 * 87.01697 * 220.04552 * 19 18 16 21 21 C 1.53780 * 87.11633 * 25.36271 * 20 19 18 22 22 H 0.97003 * 119.99734 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46942 * 60.00137 * 9 7 2 24 24 H 1.09004 * 109.47200 * 300.00245 * 9 7 2 25 25 H 1.08994 * 109.47003 * 59.99773 * 10 9 7 26 26 H 1.08998 * 109.46990 * 300.00469 * 10 9 7 27 27 H 1.08991 * 109.47359 * 60.00498 * 11 10 9 28 28 H 1.08990 * 109.47484 * 299.99671 * 11 10 9 29 29 H 1.08997 * 110.66676 * 41.28381 * 13 12 11 30 30 H 1.08999 * 110.81258 * 278.22395 * 13 12 11 31 31 H 1.09002 * 110.72878 * 204.22631 * 14 13 12 32 32 H 1.08996 * 110.72562 * 80.94530 * 14 13 12 33 33 H 1.08993 * 110.31115 * 263.03745 * 15 14 13 34 34 H 1.09007 * 110.39099 * 140.91374 * 15 14 13 35 35 H 1.09002 * 112.84791 * 49.37831 * 18 16 12 36 36 H 1.09000 * 113.61461 * 334.56153 * 19 18 16 37 37 H 1.08995 * 113.61894 * 105.46890 * 19 18 16 38 38 H 1.09005 * 113.54029 * 270.80899 * 20 19 18 39 39 H 1.09010 * 113.74678 * 139.94278 * 20 19 18 40 40 H 1.08994 * 113.61871 * 220.09800 * 21 20 19 41 41 H 1.09002 * 113.69172 * 89.19391 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0022 12 7 6.0411 -4.0218 0.0027 13 6 5.4253 -4.8044 -1.0993 14 6 6.4004 -5.9954 -1.2761 15 6 7.7845 -5.3460 -1.0469 16 6 7.4999 -4.0683 -0.2359 17 1 7.8148 -3.1914 -0.8016 18 6 8.2450 -4.1218 1.0994 19 6 8.4191 -2.7456 1.7633 20 6 9.8367 -3.2023 2.1528 21 6 9.7751 -4.1585 0.9501 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6802 0.8911 24 1 3.8752 -0.6805 -0.8888 25 1 3.6584 -3.1503 -0.8892 26 1 3.6577 -3.1507 0.8907 27 1 5.9140 -2.1233 0.8927 28 1 5.9155 -2.1226 -0.8872 29 1 5.3747 -4.2100 -2.0116 30 1 4.4338 -5.1577 -0.8164 31 1 6.3291 -6.4062 -2.2832 32 1 6.2075 -6.7658 -0.5296 33 1 8.2465 -5.0933 -2.0012 34 1 8.4301 -6.0175 -0.4808 35 1 7.8536 -4.8848 1.7723 36 1 8.4065 -1.9154 1.0571 37 1 7.7607 -2.5863 2.6172 38 1 9.8806 -3.7130 3.1149 39 1 10.5921 -2.4228 2.0527 40 1 10.2097 -5.1382 1.1484 41 1 10.1338 -3.7166 0.0204 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365106432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:15 Heat of formation + Delta-G solvation = 1.681879 kcal Electronic energy + Delta-G solvation = -17245.470474 eV Core-core repulsion = 14738.892632 eV Total energy + Delta-G solvation = -2506.577842 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.86595 -37.51407 -34.38965 -32.39278 -30.40106 -29.44804 -26.42498 -25.59593 -24.62533 -22.69446 -21.10592 -20.16442 -19.84253 -19.07548 -16.71510 -15.94768 -15.85104 -15.19731 -14.51562 -14.29994 -14.08722 -13.43245 -12.88522 -12.69175 -12.49987 -12.44890 -12.28432 -12.03501 -11.91559 -11.37037 -11.23999 -11.00808 -10.85214 -10.74554 -10.64574 -10.40667 -10.19747 -9.99773 -9.91938 -9.64501 -9.49959 -9.12747 -8.50656 -8.13881 -6.01157 -3.98572 3.32297 3.39626 3.43944 4.10088 4.47996 4.51742 4.63296 4.75013 4.77121 4.88178 5.05167 5.10629 5.32959 5.38838 5.44897 5.59340 5.67317 5.69524 5.70505 5.73995 5.80716 5.82930 5.84885 5.94566 6.04989 6.06553 6.18932 6.21193 6.22399 6.29213 6.48932 6.59023 6.67630 6.92070 7.21569 7.33641 7.41002 7.50547 7.83860 8.58455 9.04455 9.61754 11.12506 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.005448 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.003183 B = 5138.491162 C = 5892.291245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.101 4.101 11 C 0.047 3.953 12 N -0.511 5.511 13 C 0.036 3.964 14 C -0.124 4.124 15 C -0.124 4.124 16 C 0.074 3.926 17 H 0.048 0.952 18 C -0.088 4.088 19 C -0.137 4.137 20 C -0.143 4.143 21 C -0.136 4.136 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.008 0.992 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.026 0.974 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.703 -9.513 -0.144 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.081 4.081 12 N -0.235 5.235 13 C -0.092 4.092 14 C -0.162 4.162 15 C -0.163 4.163 16 C -0.035 4.035 17 H 0.066 0.934 18 C -0.107 4.107 19 C -0.174 4.174 20 C -0.180 4.180 21 C -0.174 4.174 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.026 0.974 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.408 -9.598 0.369 21.655 hybrid contribution 0.481 1.424 -0.835 1.719 sum 19.889 -8.175 -0.466 21.508 Atomic orbital electron populations 1.69920 1.06292 1.26797 1.51433 1.25035 0.94719 0.99137 0.94659 0.86778 0.80406 0.83683 0.78423 1.20399 1.21396 1.19017 1.21151 0.89529 0.94423 1.50437 0.91065 1.19548 0.97137 0.92356 0.96028 1.21526 0.91145 0.99679 1.01534 1.22481 0.97751 0.87758 1.00093 1.64723 1.02916 1.13014 1.42801 1.23201 0.98838 0.94094 0.93083 1.22492 0.94523 0.97941 1.01293 1.22411 0.97669 0.96776 0.99405 1.22414 0.89338 0.96900 0.94862 0.93352 1.22483 0.93614 0.98128 0.96435 1.22964 0.96428 0.97249 1.00770 1.22834 0.97679 0.99273 0.98263 1.22932 0.96442 0.99543 0.98528 0.92803 0.96643 0.97405 0.92867 0.92031 0.91019 0.95543 0.93853 0.89719 0.91493 0.90970 0.92021 0.91099 0.88763 0.90529 0.91325 0.90421 0.91859 0.91808 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.43 13.96 55.43 0.77 -27.66 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.08 4.81 -26.73 -0.13 -2.20 16 11 C 0.05 0.80 4.94 -3.82 -0.02 0.78 16 12 N -0.51 -7.64 5.03 -222.59 -1.12 -8.76 16 13 C 0.04 0.50 5.10 -1.90 -0.01 0.49 16 14 C -0.12 -1.38 7.06 -24.87 -0.18 -1.56 16 15 C -0.12 -1.32 6.27 -25.37 -0.16 -1.48 16 16 C 0.07 0.92 2.24 -66.64 -0.15 0.77 16 17 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 18 C -0.09 -0.99 3.26 -89.80 -0.29 -1.28 16 19 C -0.14 -1.56 6.81 -25.83 -0.18 -1.74 16 20 C -0.14 -1.35 8.09 -25.83 -0.21 -1.56 16 21 C -0.14 -1.27 6.97 -25.92 -0.18 -1.45 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 23 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 24 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 25 H 0.05 1.09 6.80 -51.93 -0.35 0.74 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.23 7.37 -51.93 -0.38 0.84 16 28 H 0.03 0.45 7.82 -51.93 -0.41 0.05 16 29 H 0.04 0.63 8.00 -51.93 -0.42 0.21 16 30 H 0.08 1.24 7.67 -51.93 -0.40 0.84 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.68 7.38 -51.92 -0.38 0.30 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.08 0.91 8.00 -51.93 -0.42 0.49 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 314.86 15.07 4.74 4.74 Total: -1.00 -30.44 314.86 -10.03 -40.47 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -7.72 Total: -3.04 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -2.04 Total: -23.26 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.35 Total: -36.42 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.44 -10.03 -40.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365106432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.152 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds