Wall clock time and date at job start Sun Mar 29 2020 22:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00257 * 2 1 4 4 H 1.48505 * 109.47043 * 269.99267 * 3 2 1 5 5 H 1.48491 * 109.47197 * 29.99670 * 3 2 1 6 6 H 1.48498 * 109.47140 * 149.99966 * 3 2 1 7 7 C 1.37879 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99760 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00114 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46744 * 180.02562 * 10 9 7 12 12 N 1.46908 * 109.46860 * 179.97438 * 11 10 9 13 13 C 1.48533 * 110.99931 * 52.60238 * 12 11 10 14 14 C 1.54932 * 103.22639 * 159.72180 * 13 12 11 15 15 C 1.54599 * 102.92266 * 322.58583 * 14 13 12 16 16 C 1.47896 * 111.00168 * 169.99958 * 12 11 10 17 17 H 1.08999 * 110.08025 * 333.60533 * 16 12 11 18 18 C 1.53006 * 109.91828 * 94.80145 * 16 12 11 19 19 C 1.53780 * 113.61448 * 278.18514 * 18 16 12 20 20 C 1.53948 * 87.01697 * 220.04552 * 19 18 16 21 21 C 1.53780 * 87.11633 * 25.36271 * 20 19 18 22 22 H 0.97003 * 119.99734 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46942 * 60.00137 * 9 7 2 24 24 H 1.09004 * 109.47200 * 300.00245 * 9 7 2 25 25 H 1.08994 * 109.47003 * 59.99773 * 10 9 7 26 26 H 1.08998 * 109.46990 * 300.00469 * 10 9 7 27 27 H 1.08991 * 109.47359 * 60.00498 * 11 10 9 28 28 H 1.08990 * 109.47484 * 299.99671 * 11 10 9 29 29 H 1.08997 * 110.66676 * 41.28381 * 13 12 11 30 30 H 1.08999 * 110.81258 * 278.22395 * 13 12 11 31 31 H 1.09002 * 110.72878 * 204.22631 * 14 13 12 32 32 H 1.08996 * 110.72562 * 80.94530 * 14 13 12 33 33 H 1.08993 * 110.31115 * 263.03745 * 15 14 13 34 34 H 1.09007 * 110.39099 * 140.91374 * 15 14 13 35 35 H 1.09002 * 112.84791 * 49.37831 * 18 16 12 36 36 H 1.09000 * 113.61461 * 334.56153 * 19 18 16 37 37 H 1.08995 * 113.61894 * 105.46890 * 19 18 16 38 38 H 1.09005 * 113.54029 * 270.80899 * 20 19 18 39 39 H 1.09010 * 113.74678 * 139.94278 * 20 19 18 40 40 H 1.08994 * 113.61871 * 220.09800 * 21 20 19 41 41 H 1.09002 * 113.69172 * 89.19391 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0022 12 7 6.0411 -4.0218 0.0027 13 6 5.4253 -4.8044 -1.0993 14 6 6.4004 -5.9954 -1.2761 15 6 7.7845 -5.3460 -1.0469 16 6 7.4999 -4.0683 -0.2359 17 1 7.8148 -3.1914 -0.8016 18 6 8.2450 -4.1218 1.0994 19 6 8.4191 -2.7456 1.7633 20 6 9.8367 -3.2023 2.1528 21 6 9.7751 -4.1585 0.9501 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6802 0.8911 24 1 3.8752 -0.6805 -0.8888 25 1 3.6584 -3.1503 -0.8892 26 1 3.6577 -3.1507 0.8907 27 1 5.9140 -2.1233 0.8927 28 1 5.9155 -2.1226 -0.8872 29 1 5.3747 -4.2100 -2.0116 30 1 4.4338 -5.1577 -0.8164 31 1 6.3291 -6.4062 -2.2832 32 1 6.2075 -6.7658 -0.5296 33 1 8.2465 -5.0933 -2.0012 34 1 8.4301 -6.0175 -0.4808 35 1 7.8536 -4.8848 1.7723 36 1 8.4065 -1.9154 1.0571 37 1 7.7607 -2.5863 2.6172 38 1 9.8806 -3.7130 3.1149 39 1 10.5921 -2.4228 2.0527 40 1 10.2097 -5.1382 1.1484 41 1 10.1338 -3.7166 0.0204 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365106432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:15 Heat of formation + Delta-G solvation = -16.113390 kcal Electronic energy + Delta-G solvation = -17246.242135 eV Core-core repulsion = 14738.892632 eV Total energy + Delta-G solvation = -2507.349503 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.83899 -38.49414 -36.12421 -34.31231 -31.96986 -30.44977 -28.15745 -26.40813 -25.61690 -24.23248 -22.54696 -21.22912 -21.14012 -20.06598 -18.90375 -17.05007 -16.87767 -16.32957 -16.07860 -15.91332 -15.25019 -14.82364 -14.47291 -14.13141 -13.75474 -13.57450 -13.29291 -13.22002 -13.13737 -12.87776 -12.65309 -12.29861 -12.11182 -11.96563 -11.83018 -11.62719 -11.55374 -11.40707 -11.31467 -11.22155 -10.91942 -10.84119 -10.78197 -9.31793 -8.31221 -6.35589 1.33531 1.35968 1.48336 2.34681 3.00756 3.03885 3.60982 3.74899 3.91456 3.94246 3.96532 4.14822 4.15519 4.27899 4.34908 4.41146 4.54954 4.64270 4.68135 4.81865 4.88826 4.90040 4.90591 4.97636 5.01669 5.03274 5.06529 5.09089 5.13673 5.17275 5.26811 5.36931 5.42589 5.48689 5.56704 5.63763 5.68176 6.06076 6.18779 6.29115 6.72119 7.28998 8.85891 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028191 B = 0.005448 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.003183 B = 5138.491162 C = 5892.291245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.534 4.534 8 H 0.029 0.971 9 C -0.009 4.009 10 C -0.090 4.090 11 C 0.061 3.939 12 N -0.521 5.521 13 C 0.029 3.971 14 C -0.117 4.117 15 C -0.119 4.119 16 C 0.071 3.929 17 H 0.044 0.956 18 C -0.090 4.090 19 C -0.146 4.146 20 C -0.136 4.136 21 C -0.124 4.124 22 H 0.267 0.733 23 H 0.019 0.981 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.747 -9.334 -0.458 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.171 1.171 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.046 4.046 10 C -0.128 4.128 11 C -0.067 4.067 12 N -0.245 5.245 13 C -0.099 4.099 14 C -0.155 4.155 15 C -0.157 4.157 16 C -0.037 4.037 17 H 0.062 0.938 18 C -0.109 4.109 19 C -0.184 4.184 20 C -0.174 4.174 21 C -0.162 4.162 22 H 0.076 0.924 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.469 -9.442 0.054 24.372 hybrid contribution -0.567 1.288 -0.727 1.584 sum 21.902 -8.154 -0.673 23.380 Atomic orbital electron populations 1.70074 1.08330 1.28212 1.52653 1.26046 0.95649 1.03602 0.94013 0.85625 0.79493 0.78071 0.79277 1.19034 1.20726 1.17063 1.21483 0.92126 0.93068 1.50472 0.95283 1.19481 0.93926 0.94919 0.96321 1.21338 0.93899 0.97029 1.00578 1.22208 0.94815 0.89488 1.00229 1.64708 1.04821 1.11416 1.43518 1.23243 0.99052 0.95229 0.92389 1.22468 0.93884 0.96686 1.02460 1.22412 0.97484 0.95851 0.99912 1.22517 0.87448 0.97840 0.95885 0.93815 1.22480 0.95109 0.97704 0.95586 1.23003 0.97822 0.97278 1.00269 1.22819 0.96317 0.99494 0.98754 1.22878 0.94404 1.00295 0.98643 0.92439 0.96250 0.96544 0.93424 0.93494 0.90973 0.95268 0.94528 0.91306 0.89747 0.90735 0.90743 0.89557 0.89581 0.91152 0.92783 0.89804 0.90996 0.90356 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.23 13.96 21.45 0.30 -60.93 16 2 C 0.00 0.21 5.47 84.66 0.46 0.67 16 3 Si 0.95 45.34 27.47 68.60 1.88 47.22 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 7 C -0.53 -32.06 9.66 25.60 0.25 -31.82 16 8 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.09 -3.78 4.81 30.59 0.15 -3.63 16 11 C 0.06 2.05 4.94 86.30 0.43 2.47 16 12 N -0.52 -15.18 5.03 -858.13 -4.31 -19.49 16 13 C 0.03 0.78 5.10 86.65 0.44 1.23 16 14 C -0.12 -2.36 7.06 31.80 0.22 -2.13 16 15 C -0.12 -2.17 6.27 31.47 0.20 -1.97 16 16 C 0.07 1.64 2.24 45.06 0.10 1.74 16 17 H 0.04 1.06 7.44 -2.39 -0.02 1.04 16 18 C -0.09 -1.85 3.26 -10.27 -0.03 -1.89 16 19 C -0.15 -3.15 6.81 31.18 0.21 -2.93 16 20 C -0.14 -2.24 8.09 31.18 0.25 -1.99 16 21 C -0.12 -1.93 6.97 31.12 0.22 -1.71 16 22 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 23 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 24 H 0.02 0.77 7.57 -2.38 -0.02 0.75 16 25 H 0.05 2.01 6.80 -2.39 -0.02 1.99 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 2.42 7.37 -2.39 -0.02 2.40 16 28 H 0.03 0.97 7.82 -2.39 -0.02 0.95 16 29 H 0.04 1.04 8.00 -2.39 -0.02 1.02 16 30 H 0.07 2.06 7.67 -2.39 -0.02 2.05 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.34 7.38 -2.38 -0.02 1.32 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.59 8.00 -2.39 -0.02 1.57 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -66.42 314.86 1.78 -64.63 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.90 Total: 10.82 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 3.02 Total: -42.26 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -4.02 Total: -80.42 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Total: -66.42 1.78 -64.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365106432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.520 kcal (2) G-P(sol) polarization free energy of solvation -66.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds