Wall clock time and date at job start Sun Mar 29 2020 21:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46904 * 179.97438 * 11 10 9 13 13 C 1.46852 * 110.99624 * 45.79406 * 12 11 10 14 14 C 1.53035 * 109.52269 * 185.83607 * 13 12 11 15 15 C 1.53117 * 109.27900 * 300.82351 * 14 13 12 16 16 C 1.53009 * 109.57509 * 177.59102 * 15 14 13 17 17 C 1.52994 * 117.49833 * 129.03157 * 16 15 14 18 18 C 1.52995 * 117.49844 * 60.36809 * 16 15 14 19 19 C 1.53111 * 109.16343 * 57.65433 * 15 14 13 20 20 C 1.46843 * 111.00119 * 169.99984 * 12 11 10 21 21 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 23 23 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 24 24 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 25 25 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 26 26 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 27 27 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 28 28 H 1.08994 * 109.46193 * 305.85393 * 13 12 11 29 29 H 1.09004 * 109.46076 * 65.82172 * 13 12 11 30 30 H 1.08999 * 109.50657 * 180.88261 * 14 13 12 31 31 H 1.09000 * 109.50231 * 60.76159 * 14 13 12 32 32 H 1.09001 * 109.52169 * 297.74239 * 15 14 13 33 33 H 1.08997 * 115.54481 * 274.69904 * 16 15 14 34 34 H 1.09007 * 117.50163 * 359.97438 * 17 16 15 35 35 H 1.08999 * 117.49741 * 145.02457 * 17 16 15 36 36 H 1.08998 * 117.50274 * 214.97819 * 18 16 15 37 37 H 1.08999 * 117.50099 * 0.02562 * 18 16 15 38 38 H 1.09006 * 109.50403 * 182.40584 * 19 15 14 39 39 H 1.08996 * 109.53715 * 62.30259 * 19 15 14 40 40 H 1.09003 * 109.46520 * 294.17957 * 20 12 11 41 41 H 1.09007 * 109.46118 * 54.15041 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 3.5043 -5.8823 0.9826 14 6 4.5543 -6.9881 0.8533 15 6 3.8897 -8.3467 1.0920 16 6 4.9208 -9.4617 0.9053 17 6 5.0466 -10.5015 2.0205 18 6 6.1445 -9.4532 1.8236 19 6 2.7488 -8.5315 0.0877 20 6 1.7511 -7.3809 0.2392 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.8721 -3.6042 -0.8894 25 1 2.8721 -3.6043 0.8905 26 1 0.8541 -5.0446 0.8913 27 1 0.8535 -5.0451 -0.8886 28 1 3.9713 -4.9147 0.7990 29 1 3.0829 -5.8972 1.9878 30 1 5.3398 -6.8323 1.5928 31 1 4.9859 -6.9649 -0.1473 32 1 3.4920 -8.3845 2.1062 33 1 5.0632 -9.8033 -0.1199 34 1 4.3951 -10.3912 2.8874 35 1 5.2722 -11.5273 1.7290 36 1 7.0920 -9.7897 1.4027 37 1 6.2149 -8.6536 2.5610 38 1 2.2443 -9.4784 0.2803 39 1 3.1514 -8.5330 -0.9251 40 1 1.3380 -7.3889 1.2479 41 1 0.9448 -7.5018 -0.4843 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366410096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:32 Heat of formation + Delta-G solvation = -0.874114 kcal Electronic energy + Delta-G solvation = -16847.908863 eV Core-core repulsion = 14341.220184 eV Total energy + Delta-G solvation = -2506.688679 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.42813 -37.23631 -34.30638 -32.68668 -30.91950 -30.43005 -26.72488 -24.54922 -23.41636 -22.26394 -22.16592 -20.57015 -19.82944 -19.41366 -16.46746 -16.02267 -15.12885 -14.80454 -14.76850 -14.42425 -14.30283 -13.65028 -13.41465 -13.15449 -12.41096 -12.17525 -12.01829 -11.73462 -11.57058 -11.40837 -11.08090 -10.97340 -10.83631 -10.75199 -10.60662 -10.51396 -10.31697 -10.05857 -9.84232 -9.53265 -9.28747 -9.01739 -8.31349 -7.95246 -5.96932 -3.99112 3.35438 3.39480 3.42209 3.62755 4.21360 4.43975 4.49441 4.71435 4.73403 4.90389 5.11470 5.21380 5.34186 5.37463 5.38690 5.44386 5.53849 5.68636 5.69870 5.73641 5.79093 5.86374 5.92374 5.93567 6.01672 6.06901 6.15098 6.23565 6.26826 6.35081 6.47392 6.75179 6.83087 7.13623 7.48069 7.48621 7.70873 7.86470 8.03487 8.46690 9.07895 9.64665 11.14545 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047827 B = 0.003976 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.308836 B = 7041.081430 C = 7488.156687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.112 4.112 11 C 0.056 3.944 12 N -0.539 5.539 13 C 0.048 3.952 14 C -0.107 4.107 15 C -0.058 4.058 16 C -0.142 4.142 17 C -0.184 4.184 18 C -0.181 4.181 19 C -0.106 4.106 20 C 0.054 3.946 21 H 0.261 0.739 22 H 0.016 0.984 23 H 0.013 0.987 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.028 0.972 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.095 -19.398 2.694 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.150 4.150 11 C -0.071 4.071 12 N -0.263 5.263 13 C -0.080 4.080 14 C -0.145 4.145 15 C -0.077 4.077 16 C -0.160 4.160 17 C -0.221 4.221 18 C -0.218 4.218 19 C -0.144 4.144 20 C -0.074 4.074 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.147 -19.301 2.231 21.068 hybrid contribution -0.001 0.959 0.843 1.277 sum 8.146 -18.342 3.074 20.303 Atomic orbital electron populations 1.69959 1.06061 1.26655 1.50960 1.25029 0.94848 0.99240 0.95390 0.86657 0.79574 0.83142 0.78618 1.20211 1.21321 1.20276 1.21221 0.92993 0.91092 1.50448 0.92757 1.19066 0.94013 0.91343 0.97106 1.21794 0.99331 0.93136 1.00710 1.22278 0.94060 0.90638 1.00140 1.62044 1.12773 1.02049 1.49466 1.22219 0.92983 0.99623 0.93165 1.21615 0.97381 0.93175 1.02322 1.20810 0.94227 0.93470 0.99171 1.22359 0.98631 0.99132 0.95894 1.23014 1.02951 0.95215 1.00917 1.22932 0.93442 1.01941 1.03477 1.21583 0.95834 0.97186 0.99772 1.22065 0.96175 0.89880 0.99301 0.92989 0.96567 0.96850 0.92553 0.93192 0.95490 0.91131 0.89359 0.95470 0.91908 0.91096 0.91737 0.87928 0.89012 0.89161 0.89056 0.88799 0.91933 0.91113 0.95421 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.38 4.40 -26.73 -0.12 -2.49 16 11 C 0.06 1.01 5.27 -3.82 -0.02 0.99 16 12 N -0.54 -8.44 4.81 -234.67 -1.13 -9.56 16 13 C 0.05 0.70 4.85 -3.83 -0.02 0.68 16 14 C -0.11 -1.28 5.19 -26.65 -0.14 -1.42 16 15 C -0.06 -0.62 2.40 -90.50 -0.22 -0.84 16 16 C -0.14 -1.31 5.15 -90.62 -0.47 -1.78 16 17 C -0.18 -1.53 10.18 -26.69 -0.27 -1.80 16 18 C -0.18 -1.55 9.78 -26.69 -0.26 -1.81 16 19 C -0.11 -1.17 5.36 -26.65 -0.14 -1.31 16 20 C 0.05 0.71 5.42 -3.84 -0.02 0.69 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.05 1.04 6.21 -51.93 -0.32 0.71 16 26 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.09 1.40 5.81 -51.93 -0.30 1.10 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.69 7.41 -51.93 -0.39 0.30 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.72 7.90 -51.93 -0.41 0.31 16 33 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.82 7.66 -51.93 -0.40 0.42 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 LS Contribution 319.48 15.07 4.81 4.81 Total: -1.00 -29.86 319.48 -10.51 -40.38 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -7.69 Total: -3.50 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -2.22 Total: -22.41 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.39 Total: -36.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.86 -10.51 -40.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366410096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.503 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds