Wall clock time and date at job start Sun Mar 29 2020 21:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48505 * 109.47183 * 239.99617 * 3 2 1 5 5 H 1.48496 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47216 * 119.99610 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46904 * 179.97438 * 11 10 9 13 13 C 1.46852 * 110.99624 * 45.79406 * 12 11 10 14 14 C 1.53035 * 109.52269 * 185.83607 * 13 12 11 15 15 C 1.53117 * 109.27900 * 300.82351 * 14 13 12 16 16 C 1.53009 * 109.57509 * 177.59102 * 15 14 13 17 17 C 1.52994 * 117.49833 * 129.03157 * 16 15 14 18 18 C 1.52995 * 117.49844 * 60.36809 * 16 15 14 19 19 C 1.53111 * 109.16343 * 57.65433 * 15 14 13 20 20 C 1.46843 * 111.00119 * 169.99984 * 12 11 10 21 21 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 23 23 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 24 24 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 25 25 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 26 26 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 27 27 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 28 28 H 1.08994 * 109.46193 * 305.85393 * 13 12 11 29 29 H 1.09004 * 109.46076 * 65.82172 * 13 12 11 30 30 H 1.08999 * 109.50657 * 180.88261 * 14 13 12 31 31 H 1.09000 * 109.50231 * 60.76159 * 14 13 12 32 32 H 1.09001 * 109.52169 * 297.74239 * 15 14 13 33 33 H 1.08997 * 115.54481 * 274.69904 * 16 15 14 34 34 H 1.09007 * 117.50163 * 359.97438 * 17 16 15 35 35 H 1.08999 * 117.49741 * 145.02457 * 17 16 15 36 36 H 1.08998 * 117.50274 * 214.97819 * 18 16 15 37 37 H 1.08999 * 117.50099 * 0.02562 * 18 16 15 38 38 H 1.09006 * 109.50403 * 182.40584 * 19 15 14 39 39 H 1.08996 * 109.53715 * 62.30259 * 19 15 14 40 40 H 1.09003 * 109.46520 * 294.17957 * 20 12 11 41 41 H 1.09007 * 109.46118 * 54.15041 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4351 -6.1036 0.0006 13 6 3.5043 -5.8823 0.9826 14 6 4.5543 -6.9881 0.8533 15 6 3.8897 -8.3467 1.0920 16 6 4.9208 -9.4617 0.9053 17 6 5.0466 -10.5015 2.0205 18 6 6.1445 -9.4532 1.8236 19 6 2.7488 -8.5315 0.0877 20 6 1.7511 -7.3809 0.2392 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.8721 -3.6042 -0.8894 25 1 2.8721 -3.6043 0.8905 26 1 0.8541 -5.0446 0.8913 27 1 0.8535 -5.0451 -0.8886 28 1 3.9713 -4.9147 0.7990 29 1 3.0829 -5.8972 1.9878 30 1 5.3398 -6.8323 1.5928 31 1 4.9859 -6.9649 -0.1473 32 1 3.4920 -8.3845 2.1062 33 1 5.0632 -9.8033 -0.1199 34 1 4.3951 -10.3912 2.8874 35 1 5.2722 -11.5273 1.7290 36 1 7.0920 -9.7897 1.4027 37 1 6.2149 -8.6536 2.5610 38 1 2.2443 -9.4784 0.2803 39 1 3.1514 -8.5330 -0.9251 40 1 1.3380 -7.3889 1.2479 41 1 0.9448 -7.5018 -0.4843 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366410096.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:31 Heat of formation + Delta-G solvation = -17.054216 kcal Electronic energy + Delta-G solvation = -16848.610485 eV Core-core repulsion = 14341.220184 eV Total energy + Delta-G solvation = -2507.390300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45333 -38.20708 -36.00036 -34.38419 -32.34045 -31.72082 -28.45350 -26.02016 -24.43162 -23.82666 -22.97432 -21.70806 -21.09477 -20.56230 -18.51633 -17.17800 -16.52527 -16.26168 -15.98178 -15.78733 -15.39950 -14.86962 -14.54913 -14.48425 -14.00931 -13.66851 -13.38545 -13.10662 -12.87685 -12.64747 -12.45715 -12.37175 -12.35762 -12.08758 -11.82936 -11.55459 -11.50762 -11.44220 -11.31918 -11.09468 -10.83751 -10.59321 -10.52543 -9.23401 -8.20740 -6.32252 1.39506 1.43042 1.50972 2.40582 2.95025 2.99146 3.12146 3.66287 3.85867 3.93660 4.10732 4.16459 4.21305 4.31687 4.38828 4.41833 4.50631 4.55688 4.67663 4.71893 4.74856 4.83982 4.89862 4.95715 5.02381 5.05191 5.06868 5.13857 5.18248 5.26231 5.30775 5.33056 5.35245 5.49657 5.57473 5.72331 5.83725 6.12173 6.23751 6.28475 6.84278 7.37017 8.91169 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.047827 B = 0.003976 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.308836 B = 7041.081430 C = 7488.156687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.095 4.095 11 C 0.066 3.934 12 N -0.542 5.542 13 C 0.046 3.954 14 C -0.100 4.100 15 C -0.054 4.054 16 C -0.148 4.148 17 C -0.178 4.178 18 C -0.182 4.182 19 C -0.099 4.099 20 C 0.051 3.949 21 H 0.264 0.736 22 H -0.008 1.008 23 H -0.011 1.011 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.023 0.977 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.026 0.974 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.612 -20.329 2.877 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.062 4.062 12 N -0.267 5.267 13 C -0.082 4.082 14 C -0.138 4.138 15 C -0.072 4.072 16 C -0.166 4.166 17 C -0.215 4.215 18 C -0.219 4.219 19 C -0.137 4.137 20 C -0.077 4.077 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.007 0.993 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.676 -20.254 2.417 22.577 hybrid contribution -0.506 1.221 0.797 1.544 sum 9.170 -19.033 3.215 21.370 Atomic orbital electron populations 1.70095 1.07848 1.27890 1.51621 1.26011 0.95802 1.03456 0.94643 0.85478 0.78270 0.77925 0.79251 1.19103 1.20737 1.19098 1.21665 0.93537 0.92383 1.50688 0.92219 1.18965 0.94374 0.93106 0.94676 1.21540 0.98125 0.92927 1.00697 1.22028 0.94042 0.90288 0.99793 1.62050 1.12463 1.02127 1.50097 1.22247 0.93258 1.00082 0.92595 1.21559 0.96752 0.92995 1.02452 1.20742 0.94441 0.93198 0.98855 1.22272 0.98714 0.99173 0.96475 1.23079 1.02501 0.95623 1.00288 1.22997 0.93737 1.02062 1.03116 1.21550 0.95451 0.96879 0.99802 1.22185 0.96918 0.89252 0.99348 0.92723 0.98999 0.99280 0.92841 0.92770 0.96047 0.91389 0.90987 0.95918 0.90778 0.91500 0.92004 0.87541 0.88998 0.87977 0.88140 0.89083 0.90020 0.91265 0.95535 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.01 13.29 21.45 0.28 -57.73 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.10 -4.12 4.40 30.60 0.13 -3.98 16 11 C 0.07 2.43 5.27 86.30 0.46 2.89 16 12 N -0.54 -16.73 4.81 -896.35 -4.31 -21.04 16 13 C 0.05 1.32 4.85 86.32 0.42 1.74 16 14 C -0.10 -2.25 5.19 30.65 0.16 -2.09 16 15 C -0.05 -1.04 2.40 -10.71 -0.03 -1.07 16 16 C -0.15 -2.39 5.15 -10.79 -0.06 -2.44 16 17 C -0.18 -2.50 10.18 30.62 0.31 -2.18 16 18 C -0.18 -2.69 9.78 30.62 0.30 -2.39 16 19 C -0.10 -1.98 5.36 30.64 0.16 -1.81 16 20 C 0.05 1.28 5.42 86.33 0.47 1.74 16 21 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 22 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 23 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 24 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.05 2.28 6.21 -2.39 -0.01 2.27 16 26 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.07 2.28 5.81 -2.39 -0.01 2.27 16 29 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 1.50 7.41 -2.39 -0.02 1.48 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.25 7.90 -2.39 -0.02 1.23 16 33 H 0.11 1.66 8.11 -2.39 -0.02 1.64 16 34 H 0.09 1.29 8.05 -2.38 -0.02 1.28 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.40 7.66 -2.39 -0.02 1.38 16 38 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 1.85 8.12 -2.38 -0.02 1.83 16 Total: -1.00 -63.84 319.48 2.13 -61.71 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.95 Total: 9.39 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 3.17 Total: -39.31 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -4.02 Total: -78.77 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.84 2.13 -61.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366410096.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.654 kcal (2) G-P(sol) polarization free energy of solvation -63.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds