Wall clock time and date at job start Sun Mar 29 2020 21:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99952 * 2 1 4 4 H 1.48494 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47111 * 300.00089 * 3 2 1 6 6 H 1.48504 * 109.47187 * 59.99659 * 3 2 1 7 7 C 1.37875 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99703 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46671 * 180.02562 * 9 7 2 11 11 C 1.46851 * 110.99686 * 170.00422 * 10 9 7 12 12 C 1.53035 * 109.52486 * 185.84051 * 11 10 9 13 13 C 1.53119 * 109.27845 * 300.82224 * 12 11 10 14 14 C 1.52994 * 109.52190 * 177.55942 * 13 12 11 15 15 C 1.54961 * 110.92578 * 66.66512 * 14 13 12 16 16 C 1.54270 * 104.16191 * 156.29427 * 15 14 13 17 17 C 1.53869 * 106.63967 * 336.44607 * 16 15 14 18 18 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 19 19 C 1.53117 * 109.21249 * 57.62125 * 13 12 11 20 20 C 1.46840 * 111.00406 * 294.21337 * 10 9 7 21 21 H 0.96997 * 119.99629 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46412 * 60.00588 * 9 7 2 23 23 H 1.09000 * 109.47637 * 300.00451 * 9 7 2 24 24 H 1.09001 * 109.46247 * 65.82125 * 11 10 9 25 25 H 1.09007 * 109.45317 * 305.85439 * 11 10 9 26 26 H 1.08996 * 109.50519 * 180.87863 * 12 11 10 27 27 H 1.09004 * 109.50007 * 60.75816 * 12 11 10 28 28 H 1.09000 * 109.52001 * 297.68282 * 13 12 11 29 29 H 1.09001 * 110.67554 * 303.35596 * 14 13 12 30 30 H 1.08997 * 110.47708 * 37.64024 * 15 14 13 31 31 H 1.09002 * 110.53308 * 274.97416 * 15 14 13 32 32 H 1.09002 * 110.03399 * 217.13605 * 16 15 14 33 33 H 1.08995 * 110.02943 * 95.75505 * 16 15 14 34 34 H 1.08999 * 110.03405 * 119.26051 * 17 16 15 35 35 H 1.09001 * 110.03705 * 240.64196 * 17 16 15 36 36 H 1.08997 * 110.48788 * 142.28685 * 18 17 16 37 37 H 1.09000 * 110.48806 * 264.79985 * 18 17 16 38 38 H 1.08996 * 109.50608 * 62.31881 * 19 13 12 39 39 H 1.09005 * 109.49996 * 182.44159 * 19 13 12 40 40 H 1.09003 * 109.46166 * 294.17940 * 20 10 9 41 41 H 1.09004 * 109.46346 * 54.15494 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5215 -4.8930 0.2374 12 6 2.5580 -6.0105 0.3756 13 6 3.3920 -6.0878 -0.9062 14 6 4.4697 -7.1625 -0.7509 15 6 3.8351 -8.5729 -0.6542 16 6 4.9592 -9.5249 -1.1125 17 6 5.9118 -8.6924 -1.9882 18 6 5.3336 -7.2628 -2.0326 19 6 4.0550 -4.7309 -1.1586 20 6 2.9751 -3.6503 -1.2508 21 1 -0.4849 0.8401 -0.0004 22 1 0.6242 -2.5566 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 0.8604 -5.1126 -0.6009 25 1 0.9356 -4.8257 1.1541 26 1 2.0493 -6.9608 0.5367 27 1 3.2110 -5.7984 1.2223 28 1 2.7453 -6.3393 -1.7468 29 1 5.0930 -6.9595 0.1200 30 1 2.9749 -8.6503 -1.3190 31 1 3.5450 -8.7919 0.3735 32 1 4.5393 -10.3459 -1.6936 33 1 5.4935 -9.9157 -0.2466 34 1 6.9084 -8.6785 -1.5469 35 1 5.9551 -9.1098 -2.9942 36 1 6.1363 -6.5258 -2.0103 37 1 4.7177 -7.1279 -2.9218 38 1 4.7321 -4.4982 -0.3368 39 1 4.6150 -4.7677 -2.0931 40 1 2.3071 -3.8757 -2.0821 41 1 3.4450 -2.6805 -1.4151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369809654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:26 Heat of formation + Delta-G solvation = -34.387450 kcal Electronic energy + Delta-G solvation = -17368.290336 eV Core-core repulsion = 14860.148410 eV Total energy + Delta-G solvation = -2508.141926 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.23807 -37.18559 -33.64595 -32.06155 -30.40037 -28.61458 -28.50317 -26.19333 -23.35426 -22.50777 -21.20632 -20.04015 -19.75874 -19.18059 -16.24862 -15.80778 -15.43131 -14.82339 -14.28096 -14.11437 -13.46254 -13.42368 -13.23451 -12.97824 -12.85424 -12.00206 -11.73242 -11.60547 -11.30494 -11.20088 -11.09314 -10.92934 -10.73184 -10.66133 -10.59971 -10.49492 -10.47415 -10.18039 -9.98578 -9.68339 -9.46513 -9.06378 -8.40381 -7.13040 -5.99416 -4.00386 3.32856 3.40102 3.45265 4.45568 4.55111 4.61807 4.67725 4.99731 5.20206 5.27533 5.34535 5.36461 5.43252 5.57227 5.59411 5.67198 5.71330 5.81685 5.85611 5.89624 5.95835 6.01699 6.03895 6.15563 6.16442 6.27795 6.29298 6.36889 6.45509 6.49661 6.55219 6.66088 6.83584 6.88257 7.37953 7.42163 7.85828 8.16445 8.30030 8.63030 9.08117 9.63811 11.11621 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.050708 B = 0.004790 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.052597 B = 5844.442851 C = 6226.565792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.192 3.808 10 N -0.536 5.536 11 C 0.055 3.945 12 C -0.107 4.107 13 C -0.077 4.077 14 C -0.084 4.084 15 C -0.120 4.120 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.120 4.120 19 C -0.110 4.110 20 C 0.065 3.935 21 H 0.260 0.740 22 H -0.011 1.011 23 H 0.029 0.971 24 H 0.018 0.982 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.015 0.985 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.725 -16.458 -2.924 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.261 5.261 11 C -0.074 4.074 12 C -0.145 4.145 13 C -0.096 4.096 14 C -0.103 4.103 15 C -0.157 4.157 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.157 4.157 19 C -0.148 4.148 20 C -0.064 4.064 21 H 0.070 0.930 22 H 0.007 0.993 23 H 0.047 0.953 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.901 -16.262 -2.538 18.712 hybrid contribution -0.288 0.816 -0.671 1.095 sum 8.612 -15.447 -3.210 17.974 Atomic orbital electron populations 1.69975 1.06071 1.26576 1.51345 1.24997 0.94851 0.99300 0.95549 0.86459 0.80104 0.83501 0.77470 1.19653 1.21152 1.21034 1.21222 0.93527 0.89975 1.49589 0.91821 1.19711 0.90140 0.87531 0.95952 1.62020 1.27728 1.02610 1.33749 1.22003 0.94926 0.90732 0.99722 1.21613 0.97824 0.97356 0.97684 1.21194 0.95878 0.94526 0.98009 1.22185 0.96311 0.94037 0.97755 1.22431 0.97677 0.94615 1.00986 1.22132 0.96886 0.98063 0.99188 1.22136 0.98790 0.95849 0.99525 1.22416 0.99097 0.95975 0.98224 1.21678 0.98197 0.93946 1.00964 1.21927 0.94966 0.98929 0.90542 0.93043 0.99316 0.95299 0.96406 0.91667 0.92603 0.91535 0.91997 0.90766 0.91757 0.91823 0.92322 0.92210 0.92196 0.92304 0.91727 0.91705 0.91610 0.92516 0.96633 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.50 -14.43 8.43 -34.44 -0.29 -14.72 16 8 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 9 C 0.19 5.15 4.72 -4.97 -0.02 5.12 16 10 N -0.54 -11.92 4.65 -236.10 -1.10 -13.02 16 11 C 0.05 1.03 5.46 -3.83 -0.02 1.01 16 12 C -0.11 -1.60 5.19 -26.65 -0.14 -1.74 16 13 C -0.08 -1.08 1.78 -90.50 -0.16 -1.24 16 14 C -0.08 -0.97 2.43 -88.59 -0.22 -1.19 16 15 C -0.12 -1.23 5.53 -25.03 -0.14 -1.37 16 16 C -0.13 -1.14 6.80 -25.61 -0.17 -1.31 16 17 C -0.13 -1.16 6.80 -25.62 -0.17 -1.33 16 18 C -0.12 -1.26 5.20 -25.07 -0.13 -1.39 16 19 C -0.11 -1.73 5.11 -26.65 -0.14 -1.87 16 20 C 0.06 1.30 5.29 -3.83 -0.02 1.28 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 23 H 0.03 0.83 7.99 -51.93 -0.41 0.41 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 1.23 8.02 -51.93 -0.42 0.81 16 26 H 0.06 0.73 7.56 -51.93 -0.39 0.34 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.68 8.02 -51.93 -0.42 0.26 16 31 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.79 7.32 -51.93 -0.38 0.41 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 1.77 6.70 -51.93 -0.35 1.42 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -29.56 311.75 -10.19 -39.75 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -7.78 Total: -4.57 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -1.72 Total: -17.29 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: -0.36 Total: -39.45 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.56 -10.19 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369809654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.359 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds