Wall clock time and date at job start Sun Mar 29 2020 21:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99952 * 2 1 4 4 H 1.48494 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47111 * 300.00089 * 3 2 1 6 6 H 1.48504 * 109.47187 * 59.99659 * 3 2 1 7 7 C 1.37875 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99703 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46671 * 180.02562 * 9 7 2 11 11 C 1.46851 * 110.99686 * 170.00422 * 10 9 7 12 12 C 1.53035 * 109.52486 * 185.84051 * 11 10 9 13 13 C 1.53119 * 109.27845 * 300.82224 * 12 11 10 14 14 C 1.52994 * 109.52190 * 177.55942 * 13 12 11 15 15 C 1.54961 * 110.92578 * 66.66512 * 14 13 12 16 16 C 1.54270 * 104.16191 * 156.29427 * 15 14 13 17 17 C 1.53869 * 106.63967 * 336.44607 * 16 15 14 18 18 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 19 19 C 1.53117 * 109.21249 * 57.62125 * 13 12 11 20 20 C 1.46840 * 111.00406 * 294.21337 * 10 9 7 21 21 H 0.96997 * 119.99629 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46412 * 60.00588 * 9 7 2 23 23 H 1.09000 * 109.47637 * 300.00451 * 9 7 2 24 24 H 1.09001 * 109.46247 * 65.82125 * 11 10 9 25 25 H 1.09007 * 109.45317 * 305.85439 * 11 10 9 26 26 H 1.08996 * 109.50519 * 180.87863 * 12 11 10 27 27 H 1.09004 * 109.50007 * 60.75816 * 12 11 10 28 28 H 1.09000 * 109.52001 * 297.68282 * 13 12 11 29 29 H 1.09001 * 110.67554 * 303.35596 * 14 13 12 30 30 H 1.08997 * 110.47708 * 37.64024 * 15 14 13 31 31 H 1.09002 * 110.53308 * 274.97416 * 15 14 13 32 32 H 1.09002 * 110.03399 * 217.13605 * 16 15 14 33 33 H 1.08995 * 110.02943 * 95.75505 * 16 15 14 34 34 H 1.08999 * 110.03405 * 119.26051 * 17 16 15 35 35 H 1.09001 * 110.03705 * 240.64196 * 17 16 15 36 36 H 1.08997 * 110.48788 * 142.28685 * 18 17 16 37 37 H 1.09000 * 110.48806 * 264.79985 * 18 17 16 38 38 H 1.08996 * 109.50608 * 62.31881 * 19 13 12 39 39 H 1.09005 * 109.49996 * 182.44159 * 19 13 12 40 40 H 1.09003 * 109.46166 * 294.17940 * 20 10 9 41 41 H 1.09004 * 109.46346 * 54.15494 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 1.5215 -4.8930 0.2374 12 6 2.5580 -6.0105 0.3756 13 6 3.3920 -6.0878 -0.9062 14 6 4.4697 -7.1625 -0.7509 15 6 3.8351 -8.5729 -0.6542 16 6 4.9592 -9.5249 -1.1125 17 6 5.9118 -8.6924 -1.9882 18 6 5.3336 -7.2628 -2.0326 19 6 4.0550 -4.7309 -1.1586 20 6 2.9751 -3.6503 -1.2508 21 1 -0.4849 0.8401 -0.0004 22 1 0.6242 -2.5566 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 0.8604 -5.1126 -0.6009 25 1 0.9356 -4.8257 1.1541 26 1 2.0493 -6.9608 0.5367 27 1 3.2110 -5.7984 1.2223 28 1 2.7453 -6.3393 -1.7468 29 1 5.0930 -6.9595 0.1200 30 1 2.9749 -8.6503 -1.3190 31 1 3.5450 -8.7919 0.3735 32 1 4.5393 -10.3459 -1.6936 33 1 5.4935 -9.9157 -0.2466 34 1 6.9084 -8.6785 -1.5469 35 1 5.9551 -9.1098 -2.9942 36 1 6.1363 -6.5258 -2.0103 37 1 4.7177 -7.1279 -2.9218 38 1 4.7321 -4.4982 -0.3368 39 1 4.6150 -4.7677 -2.0931 40 1 2.3071 -3.8757 -2.0821 41 1 3.4450 -2.6805 -1.4151 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369809654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:26 Heat of formation + Delta-G solvation = -50.889578 kcal Electronic energy + Delta-G solvation = -17369.005922 eV Core-core repulsion = 14860.148410 eV Total energy + Delta-G solvation = -2508.857512 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43515 -38.44642 -35.40049 -33.87322 -31.81475 -29.98373 -29.40675 -27.90215 -25.00153 -23.92279 -22.91867 -20.81855 -20.78888 -20.55817 -18.46519 -17.10429 -16.57659 -16.18894 -15.78724 -15.69985 -15.11616 -14.61244 -14.53224 -14.15868 -14.07079 -13.81409 -13.32941 -13.15729 -12.81743 -12.57283 -12.44532 -12.11851 -12.08285 -12.04720 -11.90471 -11.77045 -11.65403 -11.37009 -11.27300 -11.17606 -10.86882 -10.75508 -10.62453 -8.99347 -8.21791 -6.32343 1.39991 1.40776 1.54790 2.39629 3.10280 3.33567 3.66942 3.74612 3.85162 4.05733 4.16362 4.24171 4.38914 4.50720 4.60747 4.64354 4.67404 4.74404 4.80299 4.86579 4.88935 4.93185 4.98400 5.05491 5.09267 5.10066 5.19323 5.19517 5.25300 5.28859 5.32406 5.41481 5.44833 5.50645 5.59644 5.63958 5.70794 6.05287 6.37679 6.67997 6.84722 7.37729 8.89847 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.050708 B = 0.004790 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.052597 B = 5844.442851 C = 6226.565792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.206 3.794 10 N -0.543 5.543 11 C 0.051 3.949 12 C -0.097 4.097 13 C -0.072 4.072 14 C -0.080 4.080 15 C -0.119 4.119 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.099 4.099 20 C 0.064 3.936 21 H 0.265 0.735 22 H -0.043 1.043 23 H 0.002 0.998 24 H 0.013 0.987 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.007 0.993 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.551 -17.541 -3.102 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.268 5.268 11 C -0.078 4.078 12 C -0.134 4.134 13 C -0.090 4.090 14 C -0.098 4.098 15 C -0.157 4.157 16 C -0.161 4.161 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.137 4.137 20 C -0.064 4.064 21 H 0.073 0.927 22 H -0.025 1.025 23 H 0.020 0.980 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.026 0.974 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.740 -17.372 -2.718 20.604 hybrid contribution -0.912 1.127 -0.624 1.578 sum 9.828 -16.245 -3.342 19.279 Atomic orbital electron populations 1.70103 1.07824 1.27878 1.51900 1.25957 0.95767 1.03328 0.94726 0.85297 0.78953 0.78348 0.77798 1.18653 1.20302 1.20264 1.21493 0.93594 0.91047 1.49935 0.91908 1.19381 0.90224 0.89370 0.93101 1.61979 1.26845 1.02907 1.35026 1.22140 0.96085 0.90379 0.99153 1.21562 0.96922 0.96672 0.98282 1.21144 0.96388 0.94270 0.97236 1.22098 0.95581 0.93794 0.98341 1.22429 0.98000 0.93912 1.01327 1.22129 0.96444 0.97968 0.99557 1.22132 0.99016 0.94844 1.00138 1.22422 0.98920 0.97074 0.97422 1.21602 0.96682 0.93353 1.02023 1.21962 0.95586 0.99582 0.89245 0.92656 1.02511 0.98011 0.96842 0.92314 0.89974 0.91688 0.92129 0.90832 0.91959 0.91392 0.91508 0.91528 0.91600 0.91555 0.91687 0.92018 0.91884 0.90387 0.97437 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.52 -30.69 8.43 25.60 0.22 -30.47 16 8 H 0.06 3.62 7.12 -2.91 -0.02 3.60 16 9 C 0.21 11.57 4.72 85.56 0.40 11.97 16 10 N -0.54 -24.80 4.65 -900.89 -4.19 -28.99 16 11 C 0.05 1.92 5.46 86.32 0.47 2.39 16 12 C -0.10 -2.76 5.19 30.65 0.16 -2.60 16 13 C -0.07 -1.87 1.78 -10.72 -0.02 -1.89 16 14 C -0.08 -1.63 2.43 -9.48 -0.02 -1.65 16 15 C -0.12 -2.11 5.53 31.70 0.18 -1.93 16 16 C -0.12 -1.87 6.80 31.32 0.21 -1.65 16 17 C -0.12 -1.91 6.80 31.32 0.21 -1.70 16 18 C -0.12 -2.24 5.20 31.67 0.16 -2.07 16 19 C -0.10 -2.99 5.11 30.65 0.16 -2.84 16 20 C 0.06 2.62 5.29 86.33 0.46 3.08 16 21 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 22 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 23 H 0.00 0.11 7.99 -2.39 -0.02 0.09 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.06 2.26 8.02 -2.38 -0.02 2.24 16 26 H 0.08 1.94 7.56 -2.39 -0.02 1.93 16 27 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.06 1.62 8.11 -2.39 -0.02 1.61 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.14 8.02 -2.39 -0.02 1.12 16 31 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 1.19 8.05 -2.39 -0.02 1.18 16 37 H 0.06 1.19 8.05 -2.39 -0.02 1.17 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.08 2.04 7.32 -2.38 -0.02 2.03 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.06 2.60 6.70 -2.39 -0.02 2.59 16 Total: -1.00 -64.62 311.75 2.12 -62.50 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 0.95 Total: 5.74 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 3.05 Total: -28.90 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -3.90 Total: -86.51 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.62 2.12 -62.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369809654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.611 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds