Wall clock time and date at job start Sun Mar 29 2020 22:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47190 * 269.99658 * 3 2 1 5 5 H 1.48492 * 109.47229 * 30.00008 * 3 2 1 6 6 H 1.48504 * 109.46772 * 150.00317 * 3 2 1 7 7 C 1.37875 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00401 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47567 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47188 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47072 * 180.02562 * 11 10 9 13 13 C 1.46850 * 110.99915 * 45.79054 * 12 11 10 14 14 C 1.53032 * 109.52098 * 185.84118 * 13 12 11 15 15 C 1.53119 * 109.28205 * 300.81949 * 14 13 12 16 16 C 1.53124 * 109.15796 * 57.65213 * 15 14 13 17 17 H 1.09008 * 109.53016 * 62.31007 * 16 15 14 18 18 C 1.52997 * 109.50100 * 182.40626 * 16 15 14 19 19 C 1.53002 * 117.49979 * 248.55236 * 18 16 15 20 20 C 1.53003 * 117.49669 * 179.89119 * 18 16 15 21 21 C 1.46844 * 110.99887 * 170.00138 * 12 11 10 22 22 H 0.96999 * 120.00082 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47153 * 59.99528 * 9 7 2 24 24 H 1.09012 * 109.46933 * 300.00494 * 9 7 2 25 25 H 1.09002 * 109.46844 * 60.00193 * 10 9 7 26 26 H 1.08996 * 109.46961 * 300.00044 * 10 9 7 27 27 H 1.08993 * 109.47007 * 60.00172 * 11 10 9 28 28 H 1.08996 * 109.47340 * 299.99977 * 11 10 9 29 29 H 1.09005 * 109.46314 * 305.85713 * 13 12 11 30 30 H 1.08998 * 109.46244 * 65.82281 * 13 12 11 31 31 H 1.09004 * 109.50441 * 180.87586 * 14 13 12 32 32 H 1.08999 * 109.50499 * 60.76414 * 14 13 12 33 33 H 1.09001 * 109.51997 * 297.75401 * 15 14 13 34 34 H 1.08999 * 109.52624 * 177.56007 * 15 14 13 35 35 H 1.08999 * 115.55082 * 34.22253 * 18 16 15 36 36 H 1.09004 * 117.49804 * 359.97438 * 19 18 16 37 37 H 1.08996 * 117.49957 * 145.02653 * 19 18 16 38 38 H 1.08994 * 117.50249 * 214.97624 * 20 18 16 39 39 H 1.08999 * 117.49915 * 359.97438 * 20 18 16 40 40 H 1.08995 * 109.46267 * 294.17336 * 21 12 11 41 41 H 1.09000 * 109.46172 * 54.15831 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4349 -6.1037 0.0007 13 6 3.5034 -5.8819 0.9834 14 6 4.5535 -6.9878 0.8553 15 6 3.8888 -8.3463 1.0941 16 6 2.7485 -8.5315 0.0891 17 1 3.1519 -8.5334 -0.9236 18 6 2.0402 -9.8604 0.3594 19 6 2.1950 -10.9685 -0.6842 20 6 0.8618 -10.2294 -0.5441 21 6 1.7507 -7.3808 0.2394 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6043 0.8895 26 1 2.8719 -3.6043 -0.8905 27 1 0.8534 -5.0451 -0.8896 28 1 0.8539 -5.0446 0.8903 29 1 3.9707 -4.9144 0.7998 30 1 3.0814 -5.8964 1.9882 31 1 5.3386 -6.8316 1.5952 32 1 4.9858 -6.9650 -0.1451 33 1 3.4904 -8.3836 2.1080 34 1 4.6240 -9.1400 0.9612 35 1 1.9846 -10.1591 1.4062 36 1 2.8011 -10.7505 -1.5636 37 1 2.2408 -11.9962 -0.3241 38 1 0.0312 -10.7713 -0.0919 39 1 0.5909 -9.5252 -1.3307 40 1 1.3370 -7.3883 1.2477 41 1 0.9450 -7.5021 -0.4847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377497786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:11 Heat of formation + Delta-G solvation = -0.915315 kcal Electronic energy + Delta-G solvation = -16920.642343 eV Core-core repulsion = 14413.951878 eV Total energy + Delta-G solvation = -2506.690465 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.44429 -37.09652 -34.42196 -32.83664 -30.93284 -30.25766 -26.62902 -24.37111 -23.70969 -22.48728 -21.85959 -20.74454 -19.68819 -19.33941 -16.46661 -15.92529 -15.23992 -14.84154 -14.68121 -14.45499 -14.22129 -13.76457 -13.33932 -13.09214 -12.63520 -12.17331 -11.89679 -11.72331 -11.60474 -11.42189 -11.06342 -10.91496 -10.85691 -10.68241 -10.52932 -10.47146 -10.40208 -10.00283 -9.87912 -9.56544 -9.28292 -9.00496 -8.31667 -7.95087 -5.97079 -3.99148 3.33976 3.39889 3.43422 3.63087 4.15587 4.48454 4.55842 4.75918 4.79655 4.93150 5.03035 5.13920 5.38677 5.41509 5.44599 5.48779 5.53243 5.66137 5.73472 5.74976 5.80132 5.83142 5.95033 5.97172 5.99154 6.02544 6.19014 6.23964 6.29472 6.35302 6.46420 6.75057 6.82982 7.13640 7.48070 7.48705 7.71082 7.86395 8.03391 8.46674 9.08029 9.64689 11.14406 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.048294 B = 0.004098 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.647909 B = 6830.300093 C = 7266.526132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.112 4.112 11 C 0.057 3.943 12 N -0.540 5.540 13 C 0.048 3.952 14 C -0.117 4.117 15 C -0.111 4.111 16 C -0.053 4.053 17 H 0.078 0.922 18 C -0.146 4.146 19 C -0.180 4.180 20 C -0.181 4.181 21 C 0.064 3.936 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.013 0.987 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.029 0.971 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -19.869 1.234 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.150 4.150 11 C -0.070 4.070 12 N -0.264 5.264 13 C -0.080 4.080 14 C -0.155 4.155 15 C -0.149 4.149 16 C -0.072 4.072 17 H 0.096 0.904 18 C -0.165 4.165 19 C -0.217 4.217 20 C -0.218 4.218 21 C -0.065 4.065 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.106 0.894 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.291 -19.764 0.777 20.474 hybrid contribution -0.088 0.959 0.832 1.272 sum 5.203 -18.805 1.609 19.578 Atomic orbital electron populations 1.69968 1.06060 1.26529 1.51046 1.25030 0.94845 0.99245 0.95407 0.86598 0.79834 0.83499 0.78103 1.20652 1.21271 1.19892 1.21253 0.93023 0.91071 1.50313 0.92712 1.19073 0.94028 0.91364 0.97123 1.21792 0.99330 0.93115 1.00716 1.22268 0.94037 0.90582 1.00140 1.62014 1.12879 1.02057 1.49490 1.22216 0.92973 0.99607 0.93235 1.21606 0.97552 0.94190 1.02157 1.21590 0.97281 0.97358 0.98651 1.20767 0.94905 0.91419 1.00095 0.90409 1.22334 1.01884 0.95897 0.96349 1.23001 1.00663 0.96754 1.01285 1.22951 0.91843 1.03744 1.03230 1.22047 0.95838 0.89116 0.99453 0.93053 0.96557 0.96836 0.93163 0.92569 0.91162 0.95474 0.89418 0.95372 0.91799 0.91247 0.92436 0.92080 0.88124 0.88815 0.89170 0.89059 0.88559 0.95290 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.38 4.40 -26.73 -0.12 -2.49 16 11 C 0.06 1.03 5.27 -3.82 -0.02 1.01 16 12 N -0.54 -8.51 4.81 -234.67 -1.13 -9.63 16 13 C 0.05 0.70 4.85 -3.83 -0.02 0.68 16 14 C -0.12 -1.39 6.09 -26.65 -0.16 -1.56 16 15 C -0.11 -1.19 5.27 -26.61 -0.14 -1.33 16 16 C -0.05 -0.59 2.50 -90.54 -0.23 -0.82 16 17 H 0.08 0.93 7.90 -51.92 -0.41 0.52 16 18 C -0.15 -1.40 5.15 -90.62 -0.47 -1.87 16 19 C -0.18 -1.54 10.18 -26.69 -0.27 -1.81 16 20 C -0.18 -1.65 9.75 -26.69 -0.26 -1.91 16 21 C 0.06 0.85 4.54 -3.84 -0.02 0.84 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.05 1.04 6.21 -51.93 -0.32 0.72 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.09 1.39 5.81 -51.93 -0.30 1.09 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 36 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.92 7.62 -51.93 -0.40 0.53 16 40 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.94 7.31 -51.93 -0.38 0.57 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -29.87 319.34 -10.53 -40.40 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -7.68 Total: -3.30 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.25 Total: -22.58 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.39 Total: -36.26 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.87 -10.53 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377497786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.485 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds