Wall clock time and date at job start Sun Mar 29 2020 22:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47190 * 269.99658 * 3 2 1 5 5 H 1.48492 * 109.47229 * 30.00008 * 3 2 1 6 6 H 1.48504 * 109.46772 * 150.00317 * 3 2 1 7 7 C 1.37875 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99817 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00401 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47567 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47188 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47072 * 180.02562 * 11 10 9 13 13 C 1.46850 * 110.99915 * 45.79054 * 12 11 10 14 14 C 1.53032 * 109.52098 * 185.84118 * 13 12 11 15 15 C 1.53119 * 109.28205 * 300.81949 * 14 13 12 16 16 C 1.53124 * 109.15796 * 57.65213 * 15 14 13 17 17 H 1.09008 * 109.53016 * 62.31007 * 16 15 14 18 18 C 1.52997 * 109.50100 * 182.40626 * 16 15 14 19 19 C 1.53002 * 117.49979 * 248.55236 * 18 16 15 20 20 C 1.53003 * 117.49669 * 179.89119 * 18 16 15 21 21 C 1.46844 * 110.99887 * 170.00138 * 12 11 10 22 22 H 0.96999 * 120.00082 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47153 * 59.99528 * 9 7 2 24 24 H 1.09012 * 109.46933 * 300.00494 * 9 7 2 25 25 H 1.09002 * 109.46844 * 60.00193 * 10 9 7 26 26 H 1.08996 * 109.46961 * 300.00044 * 10 9 7 27 27 H 1.08993 * 109.47007 * 60.00172 * 11 10 9 28 28 H 1.08996 * 109.47340 * 299.99977 * 11 10 9 29 29 H 1.09005 * 109.46314 * 305.85713 * 13 12 11 30 30 H 1.08998 * 109.46244 * 65.82281 * 13 12 11 31 31 H 1.09004 * 109.50441 * 180.87586 * 14 13 12 32 32 H 1.08999 * 109.50499 * 60.76414 * 14 13 12 33 33 H 1.09001 * 109.51997 * 297.75401 * 15 14 13 34 34 H 1.08999 * 109.52624 * 177.56007 * 15 14 13 35 35 H 1.08999 * 115.55082 * 34.22253 * 18 16 15 36 36 H 1.09004 * 117.49804 * 359.97438 * 19 18 16 37 37 H 1.08996 * 117.49957 * 145.02653 * 19 18 16 38 38 H 1.08994 * 117.50249 * 214.97624 * 20 18 16 39 39 H 1.08999 * 117.49915 * 359.97438 * 20 18 16 40 40 H 1.08995 * 109.46267 * 294.17336 * 21 12 11 41 41 H 1.09000 * 109.46172 * 54.15831 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4349 -6.1037 0.0007 13 6 3.5034 -5.8819 0.9834 14 6 4.5535 -6.9878 0.8553 15 6 3.8888 -8.3463 1.0941 16 6 2.7485 -8.5315 0.0891 17 1 3.1519 -8.5334 -0.9236 18 6 2.0402 -9.8604 0.3594 19 6 2.1950 -10.9685 -0.6842 20 6 0.8618 -10.2294 -0.5441 21 6 1.7507 -7.3808 0.2394 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6043 0.8895 26 1 2.8719 -3.6043 -0.8905 27 1 0.8534 -5.0451 -0.8896 28 1 0.8539 -5.0446 0.8903 29 1 3.9707 -4.9144 0.7998 30 1 3.0814 -5.8964 1.9882 31 1 5.3386 -6.8316 1.5952 32 1 4.9858 -6.9650 -0.1451 33 1 3.4904 -8.3836 2.1080 34 1 4.6240 -9.1400 0.9612 35 1 1.9846 -10.1591 1.4062 36 1 2.8011 -10.7505 -1.5636 37 1 2.2408 -11.9962 -0.3241 38 1 0.0312 -10.7713 -0.0919 39 1 0.5909 -9.5252 -1.3307 40 1 1.3370 -7.3883 1.2477 41 1 0.9450 -7.5021 -0.4847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377497786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:11 Heat of formation + Delta-G solvation = -17.154481 kcal Electronic energy + Delta-G solvation = -16921.346526 eV Core-core repulsion = 14413.951878 eV Total energy + Delta-G solvation = -2507.394648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49184 -38.08691 -36.04898 -34.55725 -32.54620 -31.40751 -28.43316 -25.79467 -24.87513 -23.68883 -22.87381 -22.07989 -20.73766 -20.62609 -18.51198 -17.13193 -16.55176 -16.28106 -16.08299 -15.76791 -15.30683 -14.81311 -14.75760 -14.42194 -14.00012 -13.59002 -13.57696 -13.17315 -12.82917 -12.69771 -12.45744 -12.36593 -12.34532 -12.02542 -11.72021 -11.61648 -11.55131 -11.37767 -11.28550 -11.13609 -10.82792 -10.64909 -10.55512 -9.24568 -8.20905 -6.32329 1.39558 1.41371 1.52473 2.40395 2.82415 3.05489 3.12098 3.70329 3.88714 3.95683 4.10464 4.11733 4.21573 4.25075 4.29553 4.44608 4.55209 4.62341 4.64498 4.67053 4.76152 4.83919 4.84818 4.95442 5.02319 5.06128 5.07333 5.14590 5.16388 5.20148 5.31172 5.33836 5.38248 5.49683 5.56111 5.71770 5.83470 6.11218 6.22908 6.27573 6.84265 7.36981 8.91189 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.048294 B = 0.004098 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.647909 B = 6830.300093 C = 7266.526132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.095 4.095 11 C 0.067 3.933 12 N -0.544 5.544 13 C 0.044 3.956 14 C -0.112 4.112 15 C -0.108 4.108 16 C -0.046 4.046 17 H 0.071 0.929 18 C -0.152 4.152 19 C -0.169 4.169 20 C -0.187 4.187 21 C 0.063 3.937 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.011 1.011 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.024 0.976 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.025 0.975 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 -20.862 1.485 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.061 4.061 12 N -0.268 5.268 13 C -0.084 4.084 14 C -0.150 4.150 15 C -0.145 4.145 16 C -0.065 4.065 17 H 0.089 0.911 18 C -0.170 4.170 19 C -0.206 4.206 20 C -0.224 4.224 21 C -0.064 4.064 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.007 0.993 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.043 0.957 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.827 -20.779 1.027 21.896 hybrid contribution -0.604 1.245 0.748 1.573 sum 6.223 -19.533 1.775 20.577 Atomic orbital electron populations 1.70101 1.07851 1.27810 1.51681 1.26011 0.95801 1.03462 0.94661 0.85419 0.78654 0.78251 0.78563 1.19689 1.20658 1.18672 1.21681 0.93531 0.92332 1.50573 0.92205 1.18973 0.94393 0.93147 0.94684 1.21536 0.98118 0.92822 1.00752 1.22016 0.94036 0.90322 0.99695 1.62021 1.12566 1.02037 1.50200 1.22272 0.93247 1.00224 0.92620 1.21583 0.96999 0.93751 1.02619 1.21582 0.97345 0.97079 0.98497 1.20689 0.94579 0.91251 0.99988 0.91063 1.22279 1.02284 0.95432 0.97019 1.23066 0.99785 0.97104 1.00668 1.22997 0.92434 1.03962 1.03004 1.22125 0.96489 0.88702 0.99123 0.92738 0.99016 0.99272 0.92668 0.92815 0.91560 0.96105 0.90960 0.95794 0.90087 0.91486 0.92193 0.90163 0.87434 0.88772 0.87671 0.88150 0.89431 0.95657 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.41 4.97 29.85 0.15 1.55 16 10 C -0.09 -4.10 4.40 30.59 0.13 -3.97 16 11 C 0.07 2.49 5.27 86.30 0.46 2.95 16 12 N -0.54 -16.98 4.81 -896.38 -4.31 -21.29 16 13 C 0.04 1.27 4.85 86.32 0.42 1.69 16 14 C -0.11 -2.45 6.09 30.64 0.19 -2.26 16 15 C -0.11 -2.04 5.27 30.68 0.16 -1.88 16 16 C -0.05 -0.96 2.50 -10.74 -0.03 -0.99 16 17 H 0.07 1.59 7.90 -2.38 -0.02 1.57 16 18 C -0.15 -2.60 5.15 -10.79 -0.06 -2.65 16 19 C -0.17 -2.49 10.18 30.62 0.31 -2.18 16 20 C -0.19 -3.11 9.75 30.62 0.30 -2.81 16 21 C 0.06 1.66 4.54 86.33 0.39 2.05 16 22 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 23 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 24 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 25 H 0.05 2.32 6.21 -2.39 -0.01 2.31 16 26 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 29 H 0.07 2.28 5.81 -2.38 -0.01 2.26 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.72 8.11 -2.39 -0.02 1.71 16 36 H 0.09 1.39 8.05 -2.39 -0.02 1.37 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.61 7.62 -2.39 -0.02 1.59 16 40 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 1.82 7.31 -2.39 -0.02 1.80 16 Total: -1.00 -64.01 319.34 2.08 -61.93 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.95 Total: 9.80 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 3.12 Total: -39.73 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -4.02 Total: -79.00 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.01 2.08 -61.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377497786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.779 kcal (2) G-P(sol) polarization free energy of solvation -64.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds