Wall clock time and date at job start Sun Mar 29 2020 22:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46789 * 120.00056 * 9 7 5 12 12 H 1.48496 * 109.47355 * 240.00001 * 9 7 5 13 13 N 1.46905 * 109.47150 * 64.99960 * 3 2 1 14 14 C 1.48607 * 110.99598 * 62.56320 * 13 3 2 15 15 C 1.55121 * 103.33178 * 159.26030 * 14 13 3 16 16 C 1.53809 * 102.71205 * 323.24596 * 15 14 13 17 17 C 1.53466 * 110.58423 * 141.82339 * 16 15 14 18 18 C 1.55082 * 103.98950 * 97.94737 * 17 16 15 19 19 C 1.54961 * 102.85619 * 37.23885 * 18 17 16 20 20 C 1.53083 * 110.78378 * 260.84464 * 16 15 14 21 21 C 1.48134 * 111.00004 * 179.97438 * 13 3 2 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 28 28 H 1.09000 * 110.64642 * 277.71836 * 14 13 3 29 29 H 1.08996 * 110.64836 * 40.79612 * 14 13 3 30 30 H 1.09002 * 110.76320 * 204.94422 * 15 14 13 31 31 H 1.08998 * 110.76410 * 81.54810 * 15 14 13 32 32 H 1.09005 * 110.52245 * 216.57163 * 17 16 15 33 33 H 1.08995 * 110.52818 * 339.31453 * 17 16 15 34 34 H 1.09000 * 110.73701 * 278.89796 * 18 17 16 35 35 H 1.08996 * 110.89178 * 155.65389 * 18 17 16 36 36 H 1.09001 * 110.48360 * 203.81492 * 19 18 17 37 37 H 1.09004 * 110.59208 * 81.24499 * 19 18 17 38 38 H 1.08998 * 110.09620 * 358.06695 * 20 16 15 39 39 H 1.09003 * 110.08984 * 119.66221 * 20 16 15 40 40 H 1.09000 * 110.00313 * 333.64887 * 21 13 3 41 41 H 1.09001 * 110.00107 * 94.99883 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5987 1.5465 -0.1944 11 1 6.4970 -0.5173 -1.4631 12 1 6.3988 1.6169 -2.6103 13 7 1.6513 2.0993 1.2553 14 6 2.2768 1.4271 2.4238 15 6 2.2219 2.5114 3.5318 16 6 2.4850 3.8089 2.7489 17 6 1.6203 4.9532 3.2949 18 6 2.5731 5.7217 4.2471 19 6 3.9327 5.6486 3.5072 20 6 3.9490 4.2361 2.8818 21 6 2.1297 3.5008 1.2913 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.8292 -0.0602 -2.9503 28 1 1.7005 0.5493 2.7161 29 1 3.3089 1.1547 2.2034 30 1 3.0012 2.3439 4.2752 31 1 1.2380 2.5356 4.0003 32 1 1.2867 5.6006 2.4838 33 1 0.7667 4.5581 3.8454 34 1 2.6337 5.2253 5.2156 35 1 2.2531 6.7569 4.3650 36 1 4.7568 5.7636 4.2113 37 1 3.9875 6.4107 2.7297 38 1 4.4833 3.5444 3.5330 39 1 4.4207 4.2668 1.8996 40 1 3.0124 3.6098 0.6612 41 1 1.3421 4.1725 0.9499 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379784686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:07 Heat of formation + Delta-G solvation = -17.227026 kcal Electronic energy + Delta-G solvation = -18250.338028 eV Core-core repulsion = 15742.940234 eV Total energy + Delta-G solvation = -2507.397794 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.54634 -36.38040 -33.33750 -31.49436 -29.46125 -28.51886 -28.21006 -26.18779 -23.44841 -22.22159 -21.22050 -20.51503 -18.97461 -18.17223 -16.36406 -15.24368 -15.08121 -14.61800 -14.32776 -13.92599 -13.41019 -12.84903 -12.50856 -12.35090 -12.05692 -11.90044 -11.69754 -11.33932 -11.08043 -10.87049 -10.86322 -10.78489 -10.57992 -10.46724 -10.27304 -10.12192 -9.93585 -9.90666 -9.78896 -9.57671 -9.35617 -8.99522 -8.33795 -7.09700 -5.96817 -4.09392 3.25488 3.34426 3.37163 4.40256 4.80958 4.89264 4.94839 5.25704 5.33472 5.47238 5.64083 5.70247 5.73437 5.86464 5.91490 6.05504 6.11230 6.17556 6.28607 6.31816 6.36676 6.45988 6.50225 6.52587 6.56484 6.67416 6.68772 6.73722 6.87136 6.95661 6.99523 7.12228 7.22918 7.36853 7.64840 7.77825 8.02939 8.19870 8.31356 8.48794 9.01954 9.57091 11.02385 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.009109 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.871993 B = 3073.085545 C = 3945.320989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.203 3.797 4 H 0.037 0.963 5 C -0.538 4.538 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.516 5.516 14 C 0.040 3.960 15 C -0.112 4.112 16 C -0.070 4.070 17 C -0.107 4.107 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.113 4.113 21 C 0.050 3.950 22 H 0.047 0.953 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.031 0.969 26 H 0.091 0.909 27 H 0.260 0.740 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.543 6.577 9.891 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.096 3.904 4 H 0.055 0.945 5 C -0.577 4.577 6 H 0.077 0.923 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.239 5.239 14 C -0.088 4.088 15 C -0.150 4.150 16 C -0.071 4.071 17 C -0.144 4.144 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.150 4.150 21 C -0.078 4.078 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.109 0.891 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.105 6.448 9.711 11.845 hybrid contribution 2.014 -0.088 -0.336 2.044 sum -0.091 6.360 9.375 11.329 Atomic orbital electron populations 1.21711 0.98921 0.98339 1.00577 1.21564 0.92203 0.99206 1.01863 1.19399 0.93059 0.91256 0.86651 0.94536 1.21774 0.92845 1.37748 1.05348 0.92280 1.24917 0.97666 0.95165 0.95771 1.69888 1.34613 1.38462 1.09411 0.86667 0.86432 0.77716 0.77974 1.19905 1.21046 1.21061 1.65178 1.53619 1.00979 1.04159 1.23113 0.99159 0.95966 0.90540 1.22637 1.00436 0.94767 0.97177 1.21423 0.94288 0.94954 0.96405 1.22410 0.97288 0.96463 0.98266 1.22532 0.95627 0.99516 0.98508 1.22411 0.97003 0.97642 0.99093 1.22292 0.95929 0.95682 1.01143 1.22861 0.99353 0.91993 0.93624 0.93410 0.94236 0.95668 0.95070 0.89077 0.93008 0.92035 0.92443 0.92413 0.91922 0.91776 0.91824 0.91985 0.92312 0.92437 0.91966 0.92121 0.91362 0.91999 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.80 37.16 0.36 -2.52 16 2 C -0.11 -2.64 5.15 -26.73 -0.14 -2.78 16 3 C 0.20 5.04 1.82 -68.86 -0.12 4.91 16 4 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 5 C -0.54 -14.22 6.34 -34.44 -0.22 -14.44 16 6 H 0.06 1.57 6.05 -52.48 -0.32 1.25 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.89 -24.93 11.29 55.43 0.63 -24.31 16 9 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.52 -11.03 4.77 -224.03 -1.07 -12.10 16 14 C 0.04 0.80 5.29 -1.76 -0.01 0.79 16 15 C -0.11 -1.83 6.16 -25.19 -0.16 -1.98 16 16 C -0.07 -1.13 0.82 -153.72 -0.13 -1.26 16 17 C -0.11 -1.47 5.88 -25.39 -0.15 -1.61 16 18 C -0.12 -1.48 6.92 -24.60 -0.17 -1.65 16 19 C -0.12 -1.58 6.85 -24.92 -0.17 -1.75 16 20 C -0.11 -1.74 6.15 -25.91 -0.16 -1.90 16 21 C 0.05 0.98 5.67 -3.06 -0.02 0.96 16 22 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.03 0.73 6.77 -51.93 -0.35 0.38 16 26 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.06 1.19 7.58 -51.93 -0.39 0.80 16 29 H 0.06 1.26 6.07 -51.93 -0.32 0.95 16 30 H 0.06 0.87 7.35 -51.93 -0.38 0.48 16 31 H 0.06 0.97 7.41 -51.93 -0.39 0.58 16 32 H 0.06 0.88 7.51 -51.93 -0.39 0.49 16 33 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.93 7.25 -51.93 -0.38 0.55 16 39 H 0.07 1.17 7.13 -51.93 -0.37 0.80 16 40 H 0.06 1.36 5.29 -51.93 -0.27 1.09 16 41 H 0.06 1.08 7.35 -51.93 -0.38 0.70 16 LS Contribution 301.18 15.07 4.54 4.54 Total: -1.00 -26.93 301.18 -9.22 -36.15 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.13 Total: 1.16 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -1.17 Total: -21.50 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.44 Total: -36.41 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -26.93 -9.22 -36.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379784686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.921 kcal (2) G-P(sol) polarization free energy of solvation -26.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds