Wall clock time and date at job start Sun Mar 29 2020 22:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46789 * 120.00056 * 9 7 5 12 12 H 1.48496 * 109.47355 * 240.00001 * 9 7 5 13 13 N 1.46905 * 109.47150 * 64.99960 * 3 2 1 14 14 C 1.48607 * 110.99598 * 62.56320 * 13 3 2 15 15 C 1.55121 * 103.33178 * 159.26030 * 14 13 3 16 16 C 1.53809 * 102.71205 * 323.24596 * 15 14 13 17 17 C 1.53466 * 110.58423 * 141.82339 * 16 15 14 18 18 C 1.55082 * 103.98950 * 97.94737 * 17 16 15 19 19 C 1.54961 * 102.85619 * 37.23885 * 18 17 16 20 20 C 1.53083 * 110.78378 * 260.84464 * 16 15 14 21 21 C 1.48134 * 111.00004 * 179.97438 * 13 3 2 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 27 27 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 28 28 H 1.09000 * 110.64642 * 277.71836 * 14 13 3 29 29 H 1.08996 * 110.64836 * 40.79612 * 14 13 3 30 30 H 1.09002 * 110.76320 * 204.94422 * 15 14 13 31 31 H 1.08998 * 110.76410 * 81.54810 * 15 14 13 32 32 H 1.09005 * 110.52245 * 216.57163 * 17 16 15 33 33 H 1.08995 * 110.52818 * 339.31453 * 17 16 15 34 34 H 1.09000 * 110.73701 * 278.89796 * 18 17 16 35 35 H 1.08996 * 110.89178 * 155.65389 * 18 17 16 36 36 H 1.09001 * 110.48360 * 203.81492 * 19 18 17 37 37 H 1.09004 * 110.59208 * 81.24499 * 19 18 17 38 38 H 1.08998 * 110.09620 * 358.06695 * 20 16 15 39 39 H 1.09003 * 110.08984 * 119.66221 * 20 16 15 40 40 H 1.09000 * 110.00313 * 333.64887 * 21 13 3 41 41 H 1.09001 * 110.00107 * 94.99883 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5987 1.5465 -0.1944 11 1 6.4970 -0.5173 -1.4631 12 1 6.3988 1.6169 -2.6103 13 7 1.6513 2.0993 1.2553 14 6 2.2768 1.4271 2.4238 15 6 2.2219 2.5114 3.5318 16 6 2.4850 3.8089 2.7489 17 6 1.6203 4.9532 3.2949 18 6 2.5731 5.7217 4.2471 19 6 3.9327 5.6486 3.5072 20 6 3.9490 4.2361 2.8818 21 6 2.1297 3.5008 1.2913 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.8292 -0.0602 -2.9503 28 1 1.7005 0.5493 2.7161 29 1 3.3089 1.1547 2.2034 30 1 3.0012 2.3439 4.2752 31 1 1.2380 2.5356 4.0003 32 1 1.2867 5.6006 2.4838 33 1 0.7667 4.5581 3.8454 34 1 2.6337 5.2253 5.2156 35 1 2.2531 6.7569 4.3650 36 1 4.7568 5.7636 4.2113 37 1 3.9875 6.4107 2.7297 38 1 4.4833 3.5444 3.5330 39 1 4.4207 4.2668 1.8996 40 1 3.0124 3.6098 0.6612 41 1 1.3421 4.1725 0.9499 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379784686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:06 Heat of formation + Delta-G solvation = -31.693188 kcal Electronic energy + Delta-G solvation = -18250.965328 eV Core-core repulsion = 15742.940234 eV Total energy + Delta-G solvation = -2508.025094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.96469 -37.95043 -35.07078 -33.41920 -31.04595 -29.71364 -29.56319 -28.11417 -25.22907 -23.68508 -22.91712 -21.54982 -20.82748 -19.53938 -18.37506 -17.06317 -16.21530 -16.07665 -15.87960 -15.63560 -14.92534 -14.53091 -14.12127 -13.96336 -13.63604 -13.38351 -13.12395 -13.05899 -12.89005 -12.62309 -12.40876 -12.12946 -11.91537 -11.87489 -11.81990 -11.69396 -11.54401 -11.29589 -11.27234 -11.17518 -11.05858 -10.87211 -10.43675 -8.94339 -8.03760 -6.24823 1.33079 1.36177 1.45586 2.38245 3.14337 3.53177 3.68882 3.71560 3.84854 4.27467 4.36652 4.50478 4.56850 4.57921 4.63478 4.72964 4.76296 4.87972 4.89630 4.97592 5.00682 5.03234 5.07841 5.12424 5.20555 5.26339 5.27465 5.32139 5.37876 5.42930 5.47397 5.50691 5.55700 5.59775 5.63764 5.78673 6.05495 6.20066 6.40805 6.56698 6.97296 7.44580 8.91945 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022743 B = 0.009109 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.871993 B = 3073.085545 C = 3945.320989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.210 3.790 4 H -0.003 1.003 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.516 5.516 14 C 0.039 3.961 15 C -0.101 4.101 16 C -0.068 4.068 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.115 4.115 21 C 0.049 3.951 22 H 0.056 0.944 23 H 0.031 0.969 24 H 0.046 0.954 25 H 0.030 0.970 26 H 0.061 0.939 27 H 0.260 0.740 28 H 0.065 0.935 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.029 0.971 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.590 7.483 12.177 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.103 3.897 4 H 0.015 0.985 5 C -0.580 4.580 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.552 5.552 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.239 5.239 14 C -0.089 4.089 15 C -0.138 4.138 16 C -0.068 4.068 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.079 4.079 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.154 7.362 12.010 14.250 hybrid contribution 2.011 -0.370 -1.076 2.311 sum -0.143 6.992 10.934 12.979 Atomic orbital electron populations 1.21570 0.96327 0.99817 1.00609 1.21409 0.94490 0.98158 1.00268 1.19153 0.91973 0.91538 0.87075 0.98489 1.21966 0.93872 1.37095 1.05082 0.92915 1.25620 1.01672 0.95143 0.95661 1.70013 1.36122 1.39261 1.09845 0.85729 0.81672 0.77729 0.77877 1.19536 1.20603 1.20816 1.65103 1.53701 1.01815 1.03304 1.23116 0.97335 0.97334 0.91092 1.22609 1.02078 0.92932 0.96223 1.21417 0.95446 0.96201 0.93747 1.22382 0.97542 0.95545 0.98724 1.22503 0.94013 1.00536 0.98175 1.22397 0.98464 0.95425 0.99408 1.22276 0.95143 0.97899 0.99981 1.22889 0.97949 0.91069 0.95989 0.92489 0.94974 0.93451 0.95105 0.92052 0.93018 0.91660 0.95156 0.90579 0.90233 0.92043 0.90844 0.90781 0.90336 0.90758 0.91975 0.91948 0.94157 0.95226 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 9.80 71.98 0.71 -4.50 16 2 C -0.10 -5.13 5.15 30.59 0.16 -4.97 16 3 C 0.21 10.79 1.82 44.17 0.08 10.87 16 4 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 5 C -0.54 -29.57 6.34 25.60 0.16 -29.41 16 6 H 0.05 2.90 6.05 -2.91 -0.02 2.88 16 7 C 0.02 1.03 5.29 84.65 0.45 1.47 16 8 N -0.91 -52.99 11.29 21.45 0.24 -52.75 16 9 Si 0.94 44.15 29.54 68.60 2.03 46.17 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 N -0.52 -22.31 4.77 -862.70 -4.11 -26.43 16 14 C 0.04 1.53 5.29 86.70 0.46 1.99 16 15 C -0.10 -3.05 6.16 31.59 0.19 -2.85 16 16 C -0.07 -2.08 0.82 -51.67 -0.04 -2.13 16 17 C -0.10 -2.57 5.88 31.46 0.19 -2.38 16 18 C -0.11 -2.29 6.92 31.98 0.22 -2.07 16 19 C -0.12 -2.71 6.85 31.77 0.22 -2.50 16 20 C -0.12 -3.43 6.15 31.13 0.19 -3.24 16 21 C 0.05 1.97 5.67 86.12 0.49 2.45 16 22 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.03 1.47 6.77 -2.39 -0.02 1.45 16 26 H 0.06 3.39 5.95 -2.39 -0.01 3.37 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 29 H 0.03 1.34 6.07 -2.39 -0.01 1.33 16 30 H 0.08 2.06 7.35 -2.39 -0.02 2.04 16 31 H 0.08 2.17 7.41 -2.39 -0.02 2.16 16 32 H 0.06 1.55 7.51 -2.38 -0.02 1.53 16 33 H 0.07 1.69 7.39 -2.39 -0.02 1.67 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.06 1.81 7.25 -2.39 -0.02 1.79 16 39 H 0.04 1.40 7.13 -2.39 -0.02 1.39 16 40 H 0.03 1.36 5.29 -2.39 -0.01 1.35 16 41 H 0.06 2.26 7.35 -2.39 -0.02 2.24 16 Total: -1.00 -59.26 301.18 2.60 -56.65 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.98 Total: 13.60 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 3.47 Total: -37.25 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -3.87 Total: -79.18 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -59.26 2.60 -56.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379784686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.961 kcal (2) G-P(sol) polarization free energy of solvation -59.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds