Wall clock time and date at job start Sun Mar 29 2020 22:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47328 * 2 1 4 4 H 1.08996 * 109.47403 * 181.22230 * 3 2 1 5 5 C 1.50709 * 109.46965 * 301.21866 * 3 2 1 6 6 H 1.08001 * 120.00118 * 119.99883 * 5 3 2 7 7 C 1.37878 * 119.99756 * 300.27341 * 5 3 2 8 8 N 1.31523 * 120.00028 * 359.72603 * 7 5 3 9 9 Si 1.86791 * 120.00106 * 179.72372 * 7 5 3 10 10 H 1.48496 * 109.47210 * 90.00009 * 9 7 5 11 11 H 1.48508 * 109.47397 * 210.00415 * 9 7 5 12 12 H 1.48500 * 109.47128 * 330.00149 * 9 7 5 13 13 N 1.46901 * 109.47447 * 61.21625 * 3 2 1 14 14 C 1.48632 * 111.00105 * 63.68769 * 13 3 2 15 15 C 1.54585 * 104.62500 * 158.62076 * 14 13 3 16 16 C 1.53448 * 104.75399 * 336.28062 * 15 14 13 17 17 C 1.53460 * 110.82103 * 240.07917 * 16 15 14 18 18 C 1.55080 * 103.98674 * 215.44786 * 17 16 15 19 19 C 1.54970 * 102.85413 * 37.23867 * 18 17 16 20 20 C 1.53068 * 111.03292 * 120.72879 * 16 15 14 21 21 C 1.48753 * 111.00275 * 179.26607 * 13 3 2 22 22 H 1.09002 * 109.47227 * 65.43924 * 1 2 3 23 23 H 1.09002 * 109.47194 * 185.43949 * 1 2 3 24 24 H 1.09004 * 109.47378 * 305.43786 * 1 2 3 25 25 H 1.08995 * 109.47466 * 239.99559 * 2 1 3 26 26 H 1.09003 * 109.47092 * 119.99630 * 2 1 3 27 27 H 0.96994 * 119.99985 * 179.97438 * 8 7 5 28 28 H 1.09003 * 110.40790 * 277.41002 * 14 13 3 29 29 H 1.09003 * 110.40266 * 39.83673 * 14 13 3 30 30 H 1.08999 * 110.37934 * 95.09503 * 15 14 13 31 31 H 1.08999 * 110.38589 * 217.34547 * 15 14 13 32 32 H 1.08994 * 110.52426 * 334.07920 * 17 16 15 33 33 H 1.09003 * 110.52330 * 96.82967 * 17 16 15 34 34 H 1.08996 * 110.74136 * 278.89871 * 18 17 16 35 35 H 1.09004 * 110.89025 * 155.64296 * 18 17 16 36 36 H 1.08998 * 110.48119 * 203.82179 * 19 18 17 37 37 H 1.08996 * 110.59536 * 81.24700 * 19 18 17 38 38 H 1.08997 * 110.09799 * 240.30236 * 20 16 15 39 39 H 1.08995 * 110.09627 * 1.90733 * 20 16 15 40 40 H 1.09002 * 110.44663 * 320.36204 * 21 13 3 41 41 H 1.08996 * 110.44724 * 82.90129 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4425 -0.0219 5 6 1.5131 2.1615 -1.2152 6 1 0.8944 3.0389 -1.0974 7 6 1.8163 1.6960 -2.4771 8 7 2.5698 0.6276 -2.6204 9 14 1.1570 2.5827 -3.9831 10 1 2.1247 3.6267 -4.4061 11 1 0.9659 1.6082 -5.0873 12 1 -0.1440 3.2183 -3.6533 13 7 1.5745 2.1265 1.2138 14 6 2.1471 1.4973 2.4326 15 6 2.0461 2.5908 3.5206 16 6 1.9981 3.9127 2.7428 17 6 3.1790 4.8145 3.1264 18 6 2.5884 6.2476 3.0749 19 6 1.1531 6.0489 3.6244 20 6 0.7122 4.6843 3.0497 21 6 2.0669 3.5295 1.2572 22 1 -0.3634 0.4272 -0.9347 23 1 -0.3634 -1.0231 0.0974 24 1 -0.3634 0.5959 0.8373 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.7828 0.2999 -3.5081 28 1 1.5638 0.6219 2.7183 29 1 3.1887 1.2230 2.2651 30 1 1.1355 2.4613 4.1055 31 1 2.9209 2.5621 4.1701 32 1 3.5274 4.5806 4.1324 33 1 3.9900 4.7094 2.4058 34 1 2.5615 6.6173 2.0499 35 1 3.1557 6.9249 3.7133 36 1 0.4956 6.8425 3.2695 37 1 1.1603 6.0196 4.7139 38 1 0.1365 4.8313 2.1359 39 1 0.1171 4.1430 3.7850 40 1 3.0943 3.5838 0.8971 41 1 1.4205 4.1783 0.6663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379784687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:09 Heat of formation + Delta-G solvation = -16.022804 kcal Electronic energy + Delta-G solvation = -18136.071460 eV Core-core repulsion = 15628.725885 eV Total energy + Delta-G solvation = -2507.345575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.54694 -36.36425 -33.60195 -31.27898 -29.50690 -28.55916 -28.19411 -25.98686 -23.86261 -22.18855 -21.28152 -20.53775 -18.97791 -18.15662 -16.04910 -15.37220 -15.11340 -14.58241 -14.47344 -13.74682 -13.62373 -13.02387 -12.65601 -12.39957 -12.07607 -11.89337 -11.66410 -11.36738 -11.02098 -10.90250 -10.88847 -10.82221 -10.60360 -10.42742 -10.28047 -10.16972 -9.97352 -9.93216 -9.85609 -9.59602 -9.25135 -8.74478 -8.38186 -7.19807 -5.96715 -3.99689 3.31849 3.38816 3.42809 4.44248 4.73282 4.84106 4.89803 5.24540 5.35782 5.43116 5.51990 5.61926 5.68144 5.82820 5.85313 5.92779 6.04035 6.10067 6.20136 6.27620 6.30328 6.42687 6.48709 6.49707 6.53124 6.62655 6.62852 6.70239 6.78530 6.82713 6.88171 7.18868 7.32366 7.46134 7.66528 7.76847 7.88032 8.16604 8.39269 8.61718 9.05760 9.64049 11.10039 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.007868 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.741808 B = 3558.068508 C = 4136.862617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C 0.206 3.794 4 H -0.003 1.003 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.501 5.501 14 C 0.032 3.968 15 C -0.111 4.111 16 C -0.071 4.071 17 C -0.112 4.112 18 C -0.124 4.124 19 C -0.125 4.125 20 C -0.104 4.104 21 C 0.065 3.935 22 H 0.054 0.946 23 H 0.013 0.987 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.011 0.989 27 H 0.259 0.741 28 H 0.068 0.932 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.035 0.965 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 6.412 11.103 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.100 3.900 4 H 0.015 0.985 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.225 5.225 14 C -0.097 4.097 15 C -0.149 4.149 16 C -0.071 4.071 17 C -0.150 4.150 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.141 4.141 21 C -0.063 4.063 22 H 0.073 0.927 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.107 0.893 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.105 6.245 10.920 12.628 hybrid contribution 0.649 0.336 -0.978 1.221 sum -0.456 6.581 9.942 11.932 Atomic orbital electron populations 1.21449 0.97316 0.97139 1.01800 1.21495 0.95230 0.98110 0.99799 1.19437 0.92939 0.91297 0.86352 0.98537 1.21043 1.30887 1.11636 0.89657 0.92201 1.24901 0.95335 0.95091 0.98838 1.69886 1.37691 1.23093 1.22638 0.86599 0.79372 0.79370 0.82703 1.20899 1.21326 1.19870 1.65486 1.53749 1.00990 1.02292 1.23063 0.97411 0.97090 0.92148 1.22447 1.00904 0.94358 0.97203 1.21422 0.94544 0.94591 0.96578 1.22461 0.97299 0.94436 1.00809 1.22527 0.95920 0.96796 1.00934 1.22433 0.96463 0.97637 0.99740 1.22184 0.96537 0.94508 1.00906 1.22933 0.98453 0.92399 0.92561 0.92732 0.96775 0.93496 0.89280 0.97017 0.93097 0.91349 0.95177 0.91714 0.92392 0.92019 0.91684 0.91498 0.92310 0.92237 0.92284 0.91259 0.92098 0.94683 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.47 37.15 0.35 -2.36 16 2 C -0.11 -2.63 5.31 -26.74 -0.14 -2.78 16 3 C 0.21 5.19 1.52 -68.86 -0.11 5.09 16 4 H 0.00 -0.08 7.98 -51.93 -0.41 -0.50 16 5 C -0.49 -13.37 6.89 -34.44 -0.24 -13.61 16 6 H 0.06 1.64 7.02 -52.49 -0.37 1.27 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.50 -10.75 4.39 -223.56 -0.98 -11.73 16 14 C 0.03 0.59 5.51 -2.03 -0.01 0.57 16 15 C -0.11 -1.70 6.29 -25.67 -0.16 -1.86 16 16 C -0.07 -1.09 0.88 -153.71 -0.14 -1.23 16 17 C -0.11 -1.52 5.89 -25.39 -0.15 -1.67 16 18 C -0.12 -1.50 6.92 -24.59 -0.17 -1.67 16 19 C -0.13 -1.48 6.85 -24.91 -0.17 -1.65 16 20 C -0.10 -1.47 6.15 -25.91 -0.16 -1.63 16 21 C 0.06 1.27 4.80 -2.50 -0.01 1.26 16 22 H 0.05 1.33 7.39 -51.93 -0.38 0.95 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.05 1.03 7.48 -51.93 -0.39 0.64 16 25 H 0.09 2.41 6.09 -51.93 -0.32 2.10 16 26 H 0.01 0.26 6.99 -51.93 -0.36 -0.11 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.07 1.25 7.68 -51.93 -0.40 0.85 16 29 H 0.03 0.58 7.91 -51.93 -0.41 0.17 16 30 H 0.06 0.93 7.15 -51.93 -0.37 0.56 16 31 H 0.06 0.80 7.39 -51.93 -0.38 0.41 16 32 H 0.06 0.76 7.52 -51.93 -0.39 0.37 16 33 H 0.06 0.93 7.39 -51.93 -0.38 0.54 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.07 7.27 -51.93 -0.38 0.69 16 39 H 0.06 0.83 7.14 -51.93 -0.37 0.46 16 40 H 0.03 0.73 7.23 -51.93 -0.38 0.36 16 41 H 0.07 1.53 6.73 -51.93 -0.35 1.18 16 LS Contribution 303.73 15.07 4.58 4.58 Total: -1.00 -27.67 303.73 -9.29 -36.96 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.30 Total: -1.36 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -1.20 Total: -20.00 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.35 Total: -36.60 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.67 -9.29 -36.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379784687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.938 kcal (2) G-P(sol) polarization free energy of solvation -27.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds