Wall clock time and date at job start Sun Mar 29 2020 22:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47328 * 2 1 4 4 H 1.08996 * 109.47403 * 181.22230 * 3 2 1 5 5 C 1.50709 * 109.46965 * 301.21866 * 3 2 1 6 6 H 1.08001 * 120.00118 * 119.99883 * 5 3 2 7 7 C 1.37878 * 119.99756 * 300.27341 * 5 3 2 8 8 N 1.31523 * 120.00028 * 359.72603 * 7 5 3 9 9 Si 1.86791 * 120.00106 * 179.72372 * 7 5 3 10 10 H 1.48496 * 109.47210 * 90.00009 * 9 7 5 11 11 H 1.48508 * 109.47397 * 210.00415 * 9 7 5 12 12 H 1.48500 * 109.47128 * 330.00149 * 9 7 5 13 13 N 1.46901 * 109.47447 * 61.21625 * 3 2 1 14 14 C 1.48632 * 111.00105 * 63.68769 * 13 3 2 15 15 C 1.54585 * 104.62500 * 158.62076 * 14 13 3 16 16 C 1.53448 * 104.75399 * 336.28062 * 15 14 13 17 17 C 1.53460 * 110.82103 * 240.07917 * 16 15 14 18 18 C 1.55080 * 103.98674 * 215.44786 * 17 16 15 19 19 C 1.54970 * 102.85413 * 37.23867 * 18 17 16 20 20 C 1.53068 * 111.03292 * 120.72879 * 16 15 14 21 21 C 1.48753 * 111.00275 * 179.26607 * 13 3 2 22 22 H 1.09002 * 109.47227 * 65.43924 * 1 2 3 23 23 H 1.09002 * 109.47194 * 185.43949 * 1 2 3 24 24 H 1.09004 * 109.47378 * 305.43786 * 1 2 3 25 25 H 1.08995 * 109.47466 * 239.99559 * 2 1 3 26 26 H 1.09003 * 109.47092 * 119.99630 * 2 1 3 27 27 H 0.96994 * 119.99985 * 179.97438 * 8 7 5 28 28 H 1.09003 * 110.40790 * 277.41002 * 14 13 3 29 29 H 1.09003 * 110.40266 * 39.83673 * 14 13 3 30 30 H 1.08999 * 110.37934 * 95.09503 * 15 14 13 31 31 H 1.08999 * 110.38589 * 217.34547 * 15 14 13 32 32 H 1.08994 * 110.52426 * 334.07920 * 17 16 15 33 33 H 1.09003 * 110.52330 * 96.82967 * 17 16 15 34 34 H 1.08996 * 110.74136 * 278.89871 * 18 17 16 35 35 H 1.09004 * 110.89025 * 155.64296 * 18 17 16 36 36 H 1.08998 * 110.48119 * 203.82179 * 19 18 17 37 37 H 1.08996 * 110.59536 * 81.24700 * 19 18 17 38 38 H 1.08997 * 110.09799 * 240.30236 * 20 16 15 39 39 H 1.08995 * 110.09627 * 1.90733 * 20 16 15 40 40 H 1.09002 * 110.44663 * 320.36204 * 21 13 3 41 41 H 1.08996 * 110.44724 * 82.90129 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4425 -0.0219 5 6 1.5131 2.1615 -1.2152 6 1 0.8944 3.0389 -1.0974 7 6 1.8163 1.6960 -2.4771 8 7 2.5698 0.6276 -2.6204 9 14 1.1570 2.5827 -3.9831 10 1 2.1247 3.6267 -4.4061 11 1 0.9659 1.6082 -5.0873 12 1 -0.1440 3.2183 -3.6533 13 7 1.5745 2.1265 1.2138 14 6 2.1471 1.4973 2.4326 15 6 2.0461 2.5908 3.5206 16 6 1.9981 3.9127 2.7428 17 6 3.1790 4.8145 3.1264 18 6 2.5884 6.2476 3.0749 19 6 1.1531 6.0489 3.6244 20 6 0.7122 4.6843 3.0497 21 6 2.0669 3.5295 1.2572 22 1 -0.3634 0.4272 -0.9347 23 1 -0.3634 -1.0231 0.0974 24 1 -0.3634 0.5959 0.8373 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.7828 0.2999 -3.5081 28 1 1.5638 0.6219 2.7183 29 1 3.1887 1.2230 2.2651 30 1 1.1355 2.4613 4.1055 31 1 2.9209 2.5621 4.1701 32 1 3.5274 4.5806 4.1324 33 1 3.9900 4.7094 2.4058 34 1 2.5615 6.6173 2.0499 35 1 3.1557 6.9249 3.7133 36 1 0.4956 6.8425 3.2695 37 1 1.1603 6.0196 4.7139 38 1 0.1365 4.8313 2.1359 39 1 0.1171 4.1430 3.7850 40 1 3.0943 3.5838 0.8971 41 1 1.4205 4.1783 0.6663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379784687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:08 Heat of formation + Delta-G solvation = -30.919819 kcal Electronic energy + Delta-G solvation = -18136.717443 eV Core-core repulsion = 15628.725885 eV Total energy + Delta-G solvation = -2507.991558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91369 -37.94101 -35.32733 -33.23263 -31.10956 -29.66609 -29.54484 -27.95227 -25.64781 -23.73003 -22.87564 -21.54066 -20.79965 -19.50336 -18.11518 -17.11163 -16.31882 -16.20247 -15.88585 -15.43927 -14.99651 -14.67102 -14.30590 -13.98359 -13.77825 -13.30026 -13.23564 -12.85018 -12.83038 -12.64239 -12.42266 -12.34306 -11.89388 -11.85972 -11.80421 -11.61604 -11.58018 -11.29354 -11.26241 -11.14296 -11.01706 -10.76754 -10.49376 -9.01022 -8.09801 -6.19564 1.38492 1.40015 1.50208 2.41471 3.18204 3.43412 3.67477 3.71473 3.83351 4.21850 4.33393 4.42336 4.53191 4.59132 4.60143 4.67284 4.74677 4.84509 4.88290 4.90068 4.97168 4.99765 5.02812 5.09399 5.16098 5.24813 5.26779 5.30913 5.31705 5.42266 5.43808 5.50722 5.53802 5.61336 5.72199 5.75549 5.85640 6.26499 6.38447 6.68224 6.92993 7.48076 8.96150 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026144 B = 0.007868 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.741808 B = 3558.068508 C = 4136.862617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C 0.214 3.786 4 H -0.047 1.047 5 C -0.503 4.503 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.507 5.507 14 C 0.027 3.973 15 C -0.101 4.101 16 C -0.067 4.067 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.104 4.104 21 C 0.066 3.934 22 H 0.031 0.969 23 H 0.038 0.962 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.260 0.740 28 H 0.074 0.926 29 H 0.016 0.984 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.010 0.990 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 7.470 12.985 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C 0.106 3.894 4 H -0.029 1.029 5 C -0.541 4.541 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.231 5.231 14 C -0.101 4.101 15 C -0.139 4.139 16 C -0.067 4.067 17 C -0.149 4.149 18 C -0.160 4.160 19 C -0.155 4.155 20 C -0.142 4.142 21 C -0.062 4.062 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.034 0.966 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.028 0.972 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.950 7.311 12.816 14.883 hybrid contribution 0.943 -0.018 -1.558 1.822 sum -1.006 7.294 11.257 13.451 Atomic orbital electron populations 1.21298 0.95686 0.98638 1.00750 1.21372 0.96541 0.97311 0.99007 1.19207 0.90212 0.92218 0.87735 1.02915 1.21219 1.30647 1.11457 0.90801 0.93091 1.25625 0.95580 0.95778 1.01513 1.70018 1.38610 1.24235 1.23169 0.85659 0.78897 0.78367 0.79387 1.20422 1.20832 1.19351 1.65403 1.53843 1.01862 1.01963 1.23153 0.96446 0.98515 0.91970 1.22448 1.02859 0.92340 0.96266 1.21410 0.96582 0.95554 0.93181 1.22454 0.95978 0.94994 1.01445 1.22529 0.96462 0.96148 1.00860 1.22405 0.96060 0.96204 1.00798 1.22160 0.95522 0.96018 1.00454 1.22912 0.96293 0.91249 0.95741 0.95028 0.94257 0.92828 0.92210 0.95574 0.93096 0.90791 0.96556 0.89984 0.90111 0.89826 0.93243 0.92776 0.90007 0.91401 0.90250 0.93303 0.91022 0.97181 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.47 71.98 0.68 -4.10 16 2 C -0.10 -5.16 5.31 30.59 0.16 -5.00 16 3 C 0.21 11.17 1.52 44.17 0.07 11.23 16 4 H -0.05 -2.77 7.98 -2.39 -0.02 -2.79 16 5 C -0.50 -28.12 6.89 25.60 0.18 -27.94 16 6 H 0.05 2.88 7.02 -2.91 -0.02 2.86 16 7 C 0.01 0.75 5.30 84.65 0.45 1.20 16 8 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 9 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.51 -22.12 4.39 -861.20 -3.78 -25.90 16 14 C 0.03 1.01 5.51 86.51 0.48 1.48 16 15 C -0.10 -2.85 6.29 31.28 0.20 -2.65 16 16 C -0.07 -1.97 0.88 -51.66 -0.05 -2.01 16 17 C -0.11 -2.78 5.89 31.46 0.19 -2.59 16 18 C -0.12 -2.65 6.92 31.98 0.22 -2.43 16 19 C -0.12 -2.40 6.85 31.78 0.22 -2.18 16 20 C -0.10 -2.72 6.15 31.12 0.19 -2.53 16 21 C 0.07 2.66 4.80 86.14 0.41 3.08 16 22 H 0.03 1.53 7.39 -2.39 -0.02 1.51 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 2.30 7.48 -2.39 -0.02 2.29 16 25 H 0.06 3.33 6.09 -2.39 -0.01 3.32 16 26 H 0.03 1.18 6.99 -2.39 -0.02 1.17 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.07 2.60 7.68 -2.39 -0.02 2.59 16 29 H 0.02 0.63 7.91 -2.39 -0.02 0.62 16 30 H 0.08 2.06 7.15 -2.39 -0.02 2.05 16 31 H 0.08 1.94 7.39 -2.39 -0.02 1.92 16 32 H 0.08 1.75 7.52 -2.39 -0.02 1.74 16 33 H 0.05 1.39 7.39 -2.39 -0.02 1.37 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.47 7.27 -2.39 -0.02 1.45 16 39 H 0.07 1.72 7.14 -2.39 -0.02 1.71 16 40 H 0.01 0.44 7.23 -2.39 -0.02 0.42 16 41 H 0.06 2.43 6.73 -2.39 -0.02 2.41 16 Total: -1.00 -61.11 303.73 2.86 -58.26 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.97 Total: 9.18 kcal Atomic # 6 Polarization: -37.84 SS G_CDS: 3.39 Total: -34.45 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -3.54 Total: -79.67 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -61.11 2.86 -58.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379784687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.337 kcal (2) G-P(sol) polarization free energy of solvation -61.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds