Wall clock time and date at job start Sun Mar 29 2020 22:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46931 * 2 1 4 4 C 1.52998 * 109.46979 * 240.00016 * 2 1 3 5 5 H 1.08999 * 109.47110 * 174.10140 * 4 2 1 6 6 N 1.46894 * 109.47069 * 294.09825 * 4 2 1 7 7 C 1.46901 * 111.00241 * 278.54086 * 6 4 2 8 8 C 1.52995 * 109.47475 * 182.67849 * 7 6 4 9 9 C 1.50701 * 115.55485 * 185.97472 * 8 7 6 10 10 H 1.08001 * 120.00478 * 144.26930 * 9 8 7 11 11 C 1.37879 * 119.99580 * 324.27556 * 9 8 7 12 12 N 1.31519 * 119.99990 * 167.86896 * 11 9 8 13 13 Si 1.86806 * 120.00002 * 347.86462 * 11 9 8 14 14 H 1.48495 * 109.46988 * 95.65990 * 13 11 9 15 15 H 1.48496 * 109.46741 * 215.66019 * 13 11 9 16 16 H 1.48492 * 109.47045 * 335.66077 * 13 11 9 17 17 C 1.53005 * 117.50145 * 40.30145 * 8 7 6 18 18 C 1.53003 * 117.49959 * 331.64520 * 8 7 6 19 19 C 1.53002 * 109.47177 * 54.10032 * 4 2 1 20 20 C 1.52998 * 117.49487 * 249.31623 * 19 4 2 21 21 C 1.52996 * 117.49710 * 180.69245 * 19 4 2 22 22 H 1.09002 * 109.47232 * 54.90025 * 1 2 3 23 23 H 1.08996 * 109.47349 * 174.90313 * 1 2 3 24 24 H 1.09003 * 109.47285 * 294.89851 * 1 2 3 25 25 H 1.09001 * 109.47066 * 120.00018 * 2 1 3 26 26 H 1.08998 * 109.47476 * 60.00152 * 3 2 1 27 27 H 1.09004 * 109.46982 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47260 * 299.99899 * 3 2 1 29 29 H 1.00900 * 111.00422 * 154.58735 * 6 4 2 30 30 H 1.09001 * 109.47200 * 302.68080 * 7 6 4 31 31 H 1.09005 * 109.46860 * 62.67526 * 7 6 4 32 32 H 0.96996 * 119.99624 * 179.97438 * 12 11 9 33 33 H 1.09000 * 117.49276 * 0.02562 * 17 8 7 34 34 H 1.08996 * 117.50267 * 145.01838 * 17 8 7 35 35 H 1.09000 * 117.50142 * 214.98108 * 18 8 7 36 36 H 1.08999 * 117.49636 * 359.97438 * 18 8 7 37 37 H 1.08997 * 115.54793 * 35.02282 * 19 4 2 38 38 H 1.08993 * 117.50395 * 359.97438 * 20 19 4 39 39 H 1.09003 * 117.49897 * 145.02354 * 20 19 4 40 40 H 1.08999 * 117.49971 * 214.97271 * 21 19 4 41 41 H 1.08998 * 117.50355 * 0.02562 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 3.1248 -0.6307 -1.3036 6 7 1.6700 -2.1412 -1.1801 7 6 2.6145 -2.8911 -0.3414 8 6 2.2362 -4.3735 -0.3475 9 6 3.0325 -5.2515 0.5832 10 1 2.5543 -6.0789 1.0863 11 6 4.3716 -4.9983 0.7925 12 7 5.0096 -5.6011 1.7720 13 14 5.2798 -3.7992 -0.3153 14 1 5.3045 -2.4582 0.3220 15 1 6.6712 -4.2743 -0.5233 16 1 4.5854 -3.7122 -1.6250 17 6 1.7822 -4.9813 -1.6762 18 6 0.7630 -4.7258 -0.5632 19 6 1.4125 -0.0907 -2.4941 20 6 0.3921 -0.9253 -3.2706 21 6 1.7868 -0.6864 -3.8527 22 1 -0.3634 0.5909 -0.8408 23 1 -0.3634 -1.0235 -0.0913 24 1 -0.3634 0.4327 0.9322 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6076 -2.5440 -2.1031 30 1 3.6239 -2.7720 -0.7352 31 1 2.5755 -2.5103 0.6793 32 1 5.9517 -5.4232 1.9189 33 1 1.7535 -4.3251 -2.5461 34 1 2.0593 -6.0162 -1.8771 35 1 0.3699 -5.5928 -0.0322 36 1 0.0633 -3.9014 -0.7002 37 1 1.2492 0.9858 -2.4442 38 1 0.1681 -1.9236 -2.8950 39 1 -0.4429 -0.3978 -3.7319 40 1 1.8693 -0.0018 -4.6969 41 1 2.4797 -1.5277 -3.8597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380277813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:41 Heat of formation + Delta-G solvation = 55.952675 kcal Electronic energy + Delta-G solvation = -18111.693519 eV Core-core repulsion = 15607.469034 eV Total energy + Delta-G solvation = -2504.224484 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.30055 -36.94211 -34.81673 -32.52671 -32.05780 -27.22599 -26.92969 -25.81614 -23.47255 -22.21787 -21.63970 -21.29499 -18.89720 -18.42427 -16.96085 -15.94684 -15.46942 -15.11321 -14.82097 -13.91554 -13.55056 -13.36541 -13.18289 -12.89875 -12.42247 -12.19419 -12.04504 -11.62231 -11.59971 -11.38729 -10.95332 -10.85047 -10.75178 -10.59236 -10.38083 -10.26051 -10.05136 -9.95280 -9.73618 -9.34369 -9.18475 -8.79858 -8.31434 -7.67429 -6.17415 -4.09383 3.21531 3.32906 3.35112 3.86362 4.33547 4.59706 4.73307 4.84812 4.90685 5.07138 5.17117 5.29015 5.41223 5.47019 5.56599 5.69157 5.77621 5.84953 5.93105 5.94077 6.00355 6.05141 6.05455 6.17924 6.21163 6.25450 6.31948 6.35056 6.42903 6.58892 6.62583 6.68485 6.73652 6.92999 7.23112 7.30932 7.48976 7.76992 7.88938 8.51625 8.89795 9.47764 10.95412 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.008776 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.856337 B = 3189.630661 C = 3439.765700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 C -0.148 4.148 4 C 0.117 3.883 5 H 0.039 0.961 6 N -0.679 5.679 7 C 0.077 3.923 8 C 0.012 3.988 9 C -0.481 4.481 10 H 0.078 0.922 11 C 0.075 3.925 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.285 1.285 15 H -0.300 1.300 16 H -0.265 1.265 17 C -0.215 4.215 18 C -0.175 4.175 19 C -0.147 4.147 20 C -0.171 4.171 21 C -0.194 4.194 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.337 0.663 30 H 0.025 0.975 31 H 0.076 0.924 32 H 0.265 0.735 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.853 12.709 -8.095 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 C -0.205 4.205 4 C 0.007 3.993 5 H 0.057 0.943 6 N -0.313 5.313 7 C -0.050 4.050 8 C 0.011 3.989 9 C -0.518 4.518 10 H 0.096 0.904 11 C -0.128 4.128 12 N -0.528 5.528 13 Si 0.727 3.273 14 H -0.212 1.212 15 H -0.228 1.228 16 H -0.192 1.192 17 C -0.253 4.253 18 C -0.212 4.212 19 C -0.165 4.165 20 C -0.208 4.208 21 C -0.231 4.231 22 H 0.065 0.935 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.159 0.841 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.116 12.759 -7.478 16.412 hybrid contribution 1.459 0.548 -1.184 1.957 sum -5.658 13.307 -8.662 16.856 Atomic orbital electron populations 1.21674 0.94640 1.02796 0.99873 1.21029 0.96777 0.94654 0.97772 1.21891 1.00726 0.96586 1.01325 1.21034 0.96338 0.89003 0.92965 0.94322 1.60793 1.51575 1.00920 1.18049 1.22074 0.91921 0.93680 0.97347 1.19339 0.94128 0.90710 0.94766 1.20427 0.93548 1.13473 1.24375 0.90417 1.25004 0.97571 0.95852 0.94381 1.69932 1.10536 1.43829 1.28474 0.86832 0.77825 0.80517 0.82114 1.21165 1.22816 1.19159 1.23097 1.08199 1.01068 0.92953 1.22731 0.93451 1.01877 1.03139 1.22468 1.03741 0.98890 0.91447 1.23003 0.92204 1.02595 1.03014 1.23022 0.99446 1.03693 0.96978 0.93469 0.91072 0.94094 0.90908 0.92797 0.93120 0.92834 0.84068 0.95785 0.90565 0.92488 0.92082 0.90167 0.90780 0.89493 0.87470 0.87289 0.89269 0.89050 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.70 37.16 0.32 -1.41 16 2 C -0.08 -1.18 2.80 -90.62 -0.25 -1.44 16 3 C -0.15 -1.76 9.02 37.16 0.34 -1.42 16 4 C 0.12 1.78 2.14 -67.72 -0.15 1.64 16 5 H 0.04 0.66 7.82 -51.93 -0.41 0.25 16 6 N -0.68 -11.80 3.85 -106.73 -0.41 -12.22 16 7 C 0.08 1.67 4.20 -3.83 -0.02 1.65 16 8 C 0.01 0.28 1.84 -155.66 -0.29 -0.01 16 9 C -0.48 -13.57 9.57 -34.44 -0.33 -13.90 16 10 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 11 C 0.07 2.14 5.42 -17.82 -0.10 2.05 16 12 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 13 Si 0.90 22.21 24.22 -169.99 -4.12 18.09 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 16 H -0.27 -6.36 6.36 56.52 0.36 -6.00 16 17 C -0.22 -4.55 9.56 -26.69 -0.26 -4.81 16 18 C -0.17 -3.64 9.61 -26.69 -0.26 -3.89 16 19 C -0.15 -1.86 4.12 -90.62 -0.37 -2.23 16 20 C -0.17 -2.05 9.66 -26.73 -0.26 -2.31 16 21 C -0.19 -2.36 9.84 -26.73 -0.26 -2.62 16 22 H 0.05 0.56 7.20 -51.93 -0.37 0.19 16 23 H 0.07 1.05 7.65 -51.93 -0.40 0.65 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 1.19 7.14 -51.93 -0.37 0.81 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.57 6.44 -51.93 -0.33 0.23 16 29 H 0.34 5.73 3.69 -39.29 -0.15 5.59 16 30 H 0.02 0.56 2.50 -51.93 -0.13 0.43 16 31 H 0.08 1.72 7.19 -51.93 -0.37 1.35 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.06 1.17 6.55 -51.93 -0.34 0.83 16 34 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.09 1.66 7.39 -51.93 -0.38 1.28 16 37 H 0.11 1.22 6.36 -51.93 -0.33 0.89 16 38 H 0.11 1.45 6.26 -51.93 -0.32 1.13 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.21 7.79 -51.93 -0.40 0.80 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -28.63 306.43 -7.89 -36.52 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.87 Total: 7.92 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: -1.88 Total: -28.70 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.36 Total: -38.46 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.12 Total: 18.09 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.63 -7.89 -36.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380277813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.473 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds