Wall clock time and date at job start Sun Mar 29 2020 22:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46931 * 2 1 4 4 C 1.52998 * 109.46979 * 240.00016 * 2 1 3 5 5 H 1.08999 * 109.47110 * 174.10140 * 4 2 1 6 6 N 1.46894 * 109.47069 * 294.09825 * 4 2 1 7 7 C 1.46901 * 111.00241 * 278.54086 * 6 4 2 8 8 C 1.52995 * 109.47475 * 182.67849 * 7 6 4 9 9 C 1.50701 * 115.55485 * 185.97472 * 8 7 6 10 10 H 1.08001 * 120.00478 * 144.26930 * 9 8 7 11 11 C 1.37879 * 119.99580 * 324.27556 * 9 8 7 12 12 N 1.31519 * 119.99990 * 167.86896 * 11 9 8 13 13 Si 1.86806 * 120.00002 * 347.86462 * 11 9 8 14 14 H 1.48495 * 109.46988 * 95.65990 * 13 11 9 15 15 H 1.48496 * 109.46741 * 215.66019 * 13 11 9 16 16 H 1.48492 * 109.47045 * 335.66077 * 13 11 9 17 17 C 1.53005 * 117.50145 * 40.30145 * 8 7 6 18 18 C 1.53003 * 117.49959 * 331.64520 * 8 7 6 19 19 C 1.53002 * 109.47177 * 54.10032 * 4 2 1 20 20 C 1.52998 * 117.49487 * 249.31623 * 19 4 2 21 21 C 1.52996 * 117.49710 * 180.69245 * 19 4 2 22 22 H 1.09002 * 109.47232 * 54.90025 * 1 2 3 23 23 H 1.08996 * 109.47349 * 174.90313 * 1 2 3 24 24 H 1.09003 * 109.47285 * 294.89851 * 1 2 3 25 25 H 1.09001 * 109.47066 * 120.00018 * 2 1 3 26 26 H 1.08998 * 109.47476 * 60.00152 * 3 2 1 27 27 H 1.09004 * 109.46982 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47260 * 299.99899 * 3 2 1 29 29 H 1.00900 * 111.00422 * 154.58735 * 6 4 2 30 30 H 1.09001 * 109.47200 * 302.68080 * 7 6 4 31 31 H 1.09005 * 109.46860 * 62.67526 * 7 6 4 32 32 H 0.96996 * 119.99624 * 179.97438 * 12 11 9 33 33 H 1.09000 * 117.49276 * 0.02562 * 17 8 7 34 34 H 1.08996 * 117.50267 * 145.01838 * 17 8 7 35 35 H 1.09000 * 117.50142 * 214.98108 * 18 8 7 36 36 H 1.08999 * 117.49636 * 359.97438 * 18 8 7 37 37 H 1.08997 * 115.54793 * 35.02282 * 19 4 2 38 38 H 1.08993 * 117.50395 * 359.97438 * 20 19 4 39 39 H 1.09003 * 117.49897 * 145.02354 * 20 19 4 40 40 H 1.08999 * 117.49971 * 214.97271 * 21 19 4 41 41 H 1.08998 * 117.50355 * 0.02562 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 3.1248 -0.6307 -1.3036 6 7 1.6700 -2.1412 -1.1801 7 6 2.6145 -2.8911 -0.3414 8 6 2.2362 -4.3735 -0.3475 9 6 3.0325 -5.2515 0.5832 10 1 2.5543 -6.0789 1.0863 11 6 4.3716 -4.9983 0.7925 12 7 5.0096 -5.6011 1.7720 13 14 5.2798 -3.7992 -0.3153 14 1 5.3045 -2.4582 0.3220 15 1 6.6712 -4.2743 -0.5233 16 1 4.5854 -3.7122 -1.6250 17 6 1.7822 -4.9813 -1.6762 18 6 0.7630 -4.7258 -0.5632 19 6 1.4125 -0.0907 -2.4941 20 6 0.3921 -0.9253 -3.2706 21 6 1.7868 -0.6864 -3.8527 22 1 -0.3634 0.5909 -0.8408 23 1 -0.3634 -1.0235 -0.0913 24 1 -0.3634 0.4327 0.9322 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6076 -2.5440 -2.1031 30 1 3.6239 -2.7720 -0.7352 31 1 2.5755 -2.5103 0.6793 32 1 5.9517 -5.4232 1.9189 33 1 1.7535 -4.3251 -2.5461 34 1 2.0593 -6.0162 -1.8771 35 1 0.3699 -5.5928 -0.0322 36 1 0.0633 -3.9014 -0.7002 37 1 1.2492 0.9858 -2.4442 38 1 0.1681 -1.9236 -2.8950 39 1 -0.4429 -0.3978 -3.7319 40 1 1.8693 -0.0018 -4.6969 41 1 2.4797 -1.5277 -3.8597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380277813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:41 Heat of formation + Delta-G solvation = 39.802733 kcal Electronic energy + Delta-G solvation = -18112.393833 eV Core-core repulsion = 15607.469034 eV Total energy + Delta-G solvation = -2504.924798 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54780 -38.55623 -35.84569 -34.48236 -33.70350 -28.98201 -27.92751 -27.40147 -25.06979 -23.14515 -23.05256 -22.64071 -20.85286 -19.58430 -18.68496 -17.42422 -17.08944 -16.55201 -16.11186 -15.46677 -14.95971 -14.90876 -14.62805 -14.40973 -14.04992 -13.55702 -13.18884 -12.94514 -12.82496 -12.72660 -12.52559 -12.30905 -12.10807 -11.98627 -11.79811 -11.69228 -11.44896 -11.24732 -11.16304 -10.98568 -10.92853 -10.60047 -10.27813 -9.19427 -8.39845 -6.35313 1.21352 1.28753 1.37965 2.23700 2.81445 2.88938 3.24409 3.54728 3.72692 3.86818 4.07940 4.15728 4.20175 4.26910 4.30688 4.38391 4.42994 4.49925 4.62835 4.72449 4.80858 4.84964 4.89633 4.92699 4.98854 5.06980 5.11225 5.17580 5.19949 5.27015 5.34032 5.37693 5.46234 5.52397 5.57571 5.65305 5.67194 6.05521 6.30799 6.46556 6.68093 7.24556 8.77319 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.008776 C = 0.008138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.856337 B = 3189.630661 C = 3439.765700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 C -0.142 4.142 4 C 0.113 3.887 5 H 0.021 0.979 6 N -0.668 5.668 7 C 0.091 3.909 8 C -0.021 4.021 9 C -0.491 4.491 10 H 0.034 0.966 11 C 0.021 3.979 12 N -0.940 5.940 13 Si 0.960 3.040 14 H -0.277 1.277 15 H -0.302 1.302 16 H -0.248 1.248 17 C -0.196 4.196 18 C -0.156 4.156 19 C -0.149 4.149 20 C -0.165 4.165 21 C -0.193 4.193 22 H 0.065 0.935 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.342 0.658 30 H 0.013 0.987 31 H 0.056 0.944 32 H 0.268 0.732 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.076 15.349 -10.627 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C -0.200 4.200 4 C 0.003 3.997 5 H 0.039 0.961 6 N -0.303 5.303 7 C -0.038 4.038 8 C -0.022 4.022 9 C -0.528 4.528 10 H 0.052 0.948 11 C -0.177 4.177 12 N -0.579 5.579 13 Si 0.789 3.211 14 H -0.204 1.204 15 H -0.230 1.230 16 H -0.173 1.173 17 C -0.234 4.234 18 C -0.193 4.193 19 C -0.167 4.167 20 C -0.202 4.202 21 C -0.230 4.230 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.165 0.835 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.368 15.403 -10.026 20.194 hybrid contribution 1.753 -0.344 -0.336 1.818 sum -6.615 15.059 -10.361 19.439 Atomic orbital electron populations 1.21603 0.93533 1.02051 1.01084 1.21037 0.97678 0.95776 0.95981 1.21849 1.00339 0.95032 1.02786 1.21124 0.95724 0.87699 0.95112 0.96070 1.60735 1.49924 1.01884 1.17729 1.21710 0.92139 0.92701 0.97223 1.19273 0.95650 0.91382 0.95911 1.20653 0.94208 1.13075 1.24905 0.94782 1.25785 0.98381 0.97908 0.95612 1.70063 1.11024 1.46239 1.30582 0.85788 0.76172 0.78292 0.80861 1.20400 1.23003 1.17340 1.23062 1.06639 1.00879 0.92832 1.22738 0.92347 1.02063 1.02161 1.22414 1.04300 0.99776 0.90233 1.23031 0.92797 1.01937 1.02455 1.23077 0.99158 1.03517 0.97258 0.91584 0.92879 0.93410 0.93952 0.91831 0.93749 0.90874 0.83549 0.96943 0.92513 0.92316 0.89132 0.91056 0.91670 0.87130 0.85473 0.88636 0.87098 0.86967 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.70 71.98 0.63 -2.34 16 2 C -0.09 -2.28 2.80 -10.80 -0.03 -2.31 16 3 C -0.14 -3.02 9.02 71.98 0.65 -2.37 16 4 C 0.11 3.21 2.14 44.92 0.10 3.30 16 5 H 0.02 0.69 7.82 -2.39 -0.02 0.67 16 6 N -0.67 -21.96 3.85 -491.58 -1.89 -23.85 16 7 C 0.09 3.86 4.20 86.30 0.36 4.22 16 8 C -0.02 -0.99 1.84 -52.93 -0.10 -1.08 16 9 C -0.49 -28.69 9.57 25.60 0.25 -28.44 16 10 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 11 C 0.02 1.26 5.42 84.65 0.46 1.72 16 12 N -0.94 -59.29 13.96 21.45 0.30 -58.99 16 13 Si 0.96 46.64 24.22 68.60 1.66 48.30 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 16 H -0.25 -11.24 6.36 99.48 0.63 -10.61 16 17 C -0.20 -7.95 9.56 30.62 0.29 -7.66 16 18 C -0.16 -6.31 9.61 30.62 0.29 -6.02 16 19 C -0.15 -3.20 4.12 -10.80 -0.04 -3.24 16 20 C -0.17 -3.28 9.66 30.59 0.30 -2.99 16 21 C -0.19 -3.94 9.84 30.59 0.30 -3.64 16 22 H 0.07 1.31 7.20 -2.39 -0.02 1.29 16 23 H 0.05 1.44 7.65 -2.39 -0.02 1.43 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.04 1.37 7.14 -2.39 -0.02 1.36 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.07 1.26 6.44 -2.39 -0.02 1.25 16 29 H 0.34 10.65 3.69 -89.69 -0.33 10.32 16 30 H 0.01 0.59 2.50 -2.39 -0.01 0.58 16 31 H 0.06 2.61 7.19 -2.38 -0.02 2.59 16 32 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 33 H 0.09 3.15 6.55 -2.39 -0.02 3.13 16 34 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.11 3.96 7.39 -2.39 -0.02 3.94 16 37 H 0.13 2.27 6.36 -2.39 -0.02 2.25 16 38 H 0.10 2.19 6.26 -2.39 -0.01 2.18 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 1.77 7.79 -2.39 -0.02 1.75 16 Total: -1.00 -63.94 306.43 4.11 -59.83 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.59 Total: 25.57 kcal Atomic # 6 Polarization: -54.30 SS G_CDS: 3.45 Total: -50.85 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -1.59 Total: -82.84 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.66 Total: 48.30 kcal Total: -63.94 4.11 -59.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380277813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.630 kcal (2) G-P(sol) polarization free energy of solvation -63.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds