Wall clock time and date at job start Sun Mar 29 2020 22:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.53006 * 109.46827 * 119.99168 * 2 1 3 5 5 H 1.08991 * 109.47564 * 300.00216 * 4 2 1 6 6 N 1.46898 * 109.47195 * 179.97438 * 4 2 1 7 7 C 1.46901 * 110.99767 * 133.82412 * 6 4 2 8 8 C 1.53007 * 109.46943 * 175.26296 * 7 6 4 9 9 C 1.50691 * 115.55158 * 58.87523 * 8 7 6 10 10 H 1.07998 * 119.99840 * 264.73423 * 9 8 7 11 11 C 1.37878 * 120.00211 * 84.72928 * 9 8 7 12 12 N 1.31516 * 119.99828 * 1.98738 * 11 9 8 13 13 Si 1.86799 * 120.00201 * 181.99398 * 11 9 8 14 14 H 1.48497 * 109.46982 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47272 * 119.99856 * 13 11 9 16 16 H 1.48501 * 109.46949 * 240.00295 * 13 11 9 17 17 C 1.52997 * 117.49504 * 273.20178 * 8 7 6 18 18 C 1.53003 * 117.49244 * 204.54496 * 8 7 6 19 19 C 1.52997 * 109.46548 * 60.00429 * 4 2 1 20 20 C 1.53006 * 117.50094 * 254.23035 * 19 4 2 21 21 C 1.52997 * 59.99946 * 252.50993 * 20 19 4 22 22 H 1.09000 * 109.47359 * 300.00590 * 1 2 3 23 23 H 1.09003 * 109.46857 * 60.00511 * 1 2 3 24 24 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47708 * 239.99799 * 2 1 3 26 26 H 1.08999 * 109.47604 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47261 * 299.99287 * 3 2 1 28 28 H 1.09000 * 109.47444 * 59.99462 * 3 2 1 29 29 H 1.00896 * 111.00685 * 257.78624 * 6 4 2 30 30 H 1.09000 * 109.47441 * 295.26776 * 7 6 4 31 31 H 1.09002 * 109.46535 * 55.26398 * 7 6 4 32 32 H 0.96997 * 119.99926 * 179.97438 * 12 11 9 33 33 H 1.08998 * 117.50740 * 359.97438 * 17 8 7 34 34 H 1.08997 * 117.49838 * 145.02675 * 17 8 7 35 35 H 1.09006 * 117.49021 * 214.98053 * 18 8 7 36 36 H 1.08995 * 117.50321 * 359.97438 * 18 8 7 37 37 H 1.08999 * 115.55690 * 39.93934 * 19 4 2 38 38 H 1.08996 * 117.49296 * 0.02562 * 20 19 4 39 39 H 1.08995 * 117.49987 * 145.01915 * 20 19 4 40 40 H 1.09001 * 117.50487 * 252.50203 * 21 20 19 41 41 H 1.09008 * 117.51977 * 107.48022 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 7 3.5089 -0.7217 1.2492 7 6 4.0356 -0.3394 2.5662 8 6 5.5605 -0.4653 2.5616 9 6 6.2787 0.3710 1.5342 10 1 6.5517 -0.0599 0.5823 11 6 6.5872 1.6863 1.8094 12 7 6.2897 2.1999 2.9830 13 14 7.4276 2.7390 0.5152 14 1 7.6528 1.9311 -0.7102 15 1 6.5665 3.9041 0.1892 16 1 8.7322 3.2186 1.0380 17 6 6.1574 -1.8322 2.9025 18 6 6.2553 -0.6817 3.9075 19 6 1.5299 -2.1636 1.2494 20 6 0.4017 -2.5141 2.2218 21 6 1.8226 -3.0164 2.4855 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8898 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.8702 -1.6188 0.9617 30 1 3.7568 0.6916 2.7838 31 1 3.6189 -0.9973 3.3289 32 1 6.5070 3.1251 3.1768 33 1 5.4640 -2.6417 3.1304 34 1 7.0699 -2.1264 2.3840 35 1 7.2322 -0.2194 4.0496 36 1 5.6263 -0.7340 4.7961 37 1 1.5333 -2.6635 0.2809 38 1 0.0227 -1.7168 2.8611 39 1 -0.3374 -3.2445 1.8929 40 1 2.0184 -4.0774 2.3302 41 1 2.3790 -2.5499 3.2986 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380277814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:43 Heat of formation + Delta-G solvation = 32.648424 kcal Electronic energy + Delta-G solvation = -17816.979749 eV Core-core repulsion = 15311.744717 eV Total energy + Delta-G solvation = -2505.235032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.71566 -36.51258 -34.75956 -32.47082 -31.72584 -26.80418 -26.58292 -25.23853 -23.04592 -22.18522 -21.00055 -20.71188 -19.74680 -18.70497 -16.07825 -15.63528 -14.90721 -14.70127 -14.39674 -13.78431 -13.59673 -13.04739 -12.85008 -12.61177 -12.09475 -11.86221 -11.75403 -11.41308 -11.20075 -11.06665 -10.90885 -10.84136 -10.65601 -10.40862 -10.37318 -10.15804 -10.13481 -10.09767 -9.79315 -9.21345 -8.82257 -8.28504 -7.97898 -7.35511 -5.88848 -3.90963 3.37080 3.45270 3.49901 3.92981 4.52664 4.72837 4.89343 5.06867 5.21894 5.41131 5.43005 5.44882 5.53497 5.58107 5.72979 5.82983 5.88539 5.97436 6.07851 6.17326 6.20085 6.25982 6.28854 6.37882 6.42196 6.45526 6.57302 6.63177 6.68233 6.78681 6.82288 7.00352 7.13867 7.20123 7.56635 7.63103 8.02568 8.10180 8.33230 8.61884 9.07755 9.72183 11.20622 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.008449 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.764953 B = 3313.016786 C = 4216.926792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C -0.139 4.139 4 C 0.121 3.879 5 H 0.061 0.939 6 N -0.657 5.657 7 C 0.111 3.889 8 C 0.048 3.952 9 C -0.465 4.465 10 H 0.058 0.942 11 C 0.068 3.932 12 N -0.886 5.886 13 Si 0.887 3.113 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.289 1.289 17 C -0.218 4.218 18 C -0.155 4.155 19 C -0.167 4.167 20 C -0.178 4.178 21 C -0.182 4.182 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.334 0.666 30 H 0.069 0.931 31 H -0.007 1.007 32 H 0.255 0.745 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.369 -6.475 -2.522 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 C -0.196 4.196 4 C 0.010 3.990 5 H 0.080 0.920 6 N -0.285 5.285 7 C -0.018 4.018 8 C 0.047 3.953 9 C -0.503 4.503 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.524 5.524 13 Si 0.715 3.285 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.215 1.215 17 C -0.255 4.255 18 C -0.193 4.193 19 C -0.186 4.186 20 C -0.216 4.216 21 C -0.219 4.219 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.152 0.848 30 H 0.088 0.912 31 H 0.011 0.989 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.284 -5.642 -2.674 12.031 hybrid contribution 0.225 -0.196 0.018 0.298 sum -10.059 -5.837 -2.657 11.930 Atomic orbital electron populations 1.21856 0.96374 1.01103 1.00931 1.21004 0.93600 0.96979 0.97916 1.21708 1.03794 0.94568 0.99567 1.21231 0.89541 0.90614 0.97594 0.92044 1.60402 1.03376 1.35149 1.29590 1.21589 0.95215 0.98727 0.86252 1.18883 0.89798 0.91734 0.94838 1.20302 1.35393 0.94869 0.99767 0.92378 1.24909 0.95656 0.97763 0.95002 1.70018 1.47743 1.13850 1.20809 0.86624 0.78973 0.80627 0.82258 1.19816 1.21168 1.21502 1.23015 1.02708 0.92607 1.07183 1.22478 1.02427 1.01236 0.93129 1.23060 1.02845 0.98151 0.94561 1.22913 0.91602 1.03404 1.03704 1.22951 0.98857 0.99575 1.00545 0.93300 0.93370 0.92931 0.91590 0.89994 0.94378 0.93923 0.84796 0.91247 0.98859 0.93489 0.92267 0.90668 0.89926 0.92394 0.88056 0.89121 0.89399 0.89214 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.94 37.16 0.33 -1.46 16 2 C -0.08 -1.13 2.69 -90.62 -0.24 -1.37 16 3 C -0.14 -2.32 9.04 37.16 0.34 -1.99 16 4 C 0.12 1.91 1.89 -67.71 -0.13 1.78 16 5 H 0.06 1.05 7.40 -51.93 -0.38 0.67 16 6 N -0.66 -12.49 5.39 -106.72 -0.58 -13.06 16 7 C 0.11 2.42 5.25 -3.82 -0.02 2.40 16 8 C 0.05 1.16 1.55 -155.66 -0.24 0.92 16 9 C -0.47 -12.54 8.62 -34.44 -0.30 -12.84 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.07 1.87 5.43 -17.82 -0.10 1.78 16 12 N -0.89 -25.20 12.73 55.43 0.71 -24.49 16 13 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 C -0.22 -4.73 9.94 -26.69 -0.27 -5.00 16 18 C -0.15 -3.67 9.25 -26.69 -0.25 -3.92 16 19 C -0.17 -2.24 3.67 -90.62 -0.33 -2.57 16 20 C -0.18 -2.13 9.86 -26.73 -0.26 -2.39 16 21 C -0.18 -2.41 10.21 -26.73 -0.27 -2.68 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.60 6.95 -51.93 -0.36 0.24 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 1.64 7.60 -51.93 -0.39 1.25 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.33 6.26 8.13 -39.29 -0.32 5.94 16 30 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 31 H -0.01 -0.14 6.54 -51.93 -0.34 -0.48 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.08 2.12 8.14 -51.93 -0.42 1.69 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.42 6.59 -51.92 -0.34 1.07 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -27.08 328.57 -9.28 -36.37 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -7.60 Total: 7.05 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -1.74 Total: -27.34 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.13 Total: -37.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.08 -9.28 -36.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380277814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.014 kcal (2) G-P(sol) polarization free energy of solvation -27.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds