Wall clock time and date at job start Sun Mar 29 2020 22:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.53006 * 109.46827 * 119.99168 * 2 1 3 5 5 H 1.08991 * 109.47564 * 300.00216 * 4 2 1 6 6 N 1.46898 * 109.47195 * 179.97438 * 4 2 1 7 7 C 1.46901 * 110.99767 * 133.82412 * 6 4 2 8 8 C 1.53007 * 109.46943 * 175.26296 * 7 6 4 9 9 C 1.50691 * 115.55158 * 58.87523 * 8 7 6 10 10 H 1.07998 * 119.99840 * 264.73423 * 9 8 7 11 11 C 1.37878 * 120.00211 * 84.72928 * 9 8 7 12 12 N 1.31516 * 119.99828 * 1.98738 * 11 9 8 13 13 Si 1.86799 * 120.00201 * 181.99398 * 11 9 8 14 14 H 1.48497 * 109.46982 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47272 * 119.99856 * 13 11 9 16 16 H 1.48501 * 109.46949 * 240.00295 * 13 11 9 17 17 C 1.52997 * 117.49504 * 273.20178 * 8 7 6 18 18 C 1.53003 * 117.49244 * 204.54496 * 8 7 6 19 19 C 1.52997 * 109.46548 * 60.00429 * 4 2 1 20 20 C 1.53006 * 117.50094 * 254.23035 * 19 4 2 21 21 C 1.52997 * 59.99946 * 252.50993 * 20 19 4 22 22 H 1.09000 * 109.47359 * 300.00590 * 1 2 3 23 23 H 1.09003 * 109.46857 * 60.00511 * 1 2 3 24 24 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47708 * 239.99799 * 2 1 3 26 26 H 1.08999 * 109.47604 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47261 * 299.99287 * 3 2 1 28 28 H 1.09000 * 109.47444 * 59.99462 * 3 2 1 29 29 H 1.00896 * 111.00685 * 257.78624 * 6 4 2 30 30 H 1.09000 * 109.47441 * 295.26776 * 7 6 4 31 31 H 1.09002 * 109.46535 * 55.26398 * 7 6 4 32 32 H 0.96997 * 119.99926 * 179.97438 * 12 11 9 33 33 H 1.08998 * 117.50740 * 359.97438 * 17 8 7 34 34 H 1.08997 * 117.49838 * 145.02675 * 17 8 7 35 35 H 1.09006 * 117.49021 * 214.98053 * 18 8 7 36 36 H 1.08995 * 117.50321 * 359.97438 * 18 8 7 37 37 H 1.08999 * 115.55690 * 39.93934 * 19 4 2 38 38 H 1.08996 * 117.49296 * 0.02562 * 20 19 4 39 39 H 1.08995 * 117.49987 * 145.01915 * 20 19 4 40 40 H 1.09001 * 117.50487 * 252.50203 * 21 20 19 41 41 H 1.09008 * 117.51977 * 107.48022 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 7 3.5089 -0.7217 1.2492 7 6 4.0356 -0.3394 2.5662 8 6 5.5605 -0.4653 2.5616 9 6 6.2787 0.3710 1.5342 10 1 6.5517 -0.0599 0.5823 11 6 6.5872 1.6863 1.8094 12 7 6.2897 2.1999 2.9830 13 14 7.4276 2.7390 0.5152 14 1 7.6528 1.9311 -0.7102 15 1 6.5665 3.9041 0.1892 16 1 8.7322 3.2186 1.0380 17 6 6.1574 -1.8322 2.9025 18 6 6.2553 -0.6817 3.9075 19 6 1.5299 -2.1636 1.2494 20 6 0.4017 -2.5141 2.2218 21 6 1.8226 -3.0164 2.4855 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8898 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 3.8702 -1.6188 0.9617 30 1 3.7568 0.6916 2.7838 31 1 3.6189 -0.9973 3.3289 32 1 6.5070 3.1251 3.1768 33 1 5.4640 -2.6417 3.1304 34 1 7.0699 -2.1264 2.3840 35 1 7.2322 -0.2194 4.0496 36 1 5.6263 -0.7340 4.7961 37 1 1.5333 -2.6635 0.2809 38 1 0.0227 -1.7168 2.8611 39 1 -0.3374 -3.2445 1.8929 40 1 2.0184 -4.0774 2.3302 41 1 2.3790 -2.5499 3.2986 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380277814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:43 Heat of formation + Delta-G solvation = 19.072479 kcal Electronic energy + Delta-G solvation = -17817.568447 eV Core-core repulsion = 15311.744717 eV Total energy + Delta-G solvation = -2505.823729 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.98873 -38.26141 -35.91611 -34.08969 -33.69242 -28.31783 -27.84735 -27.19562 -24.58814 -23.16593 -22.83999 -21.86232 -21.24540 -20.38722 -17.96180 -16.94729 -16.51444 -16.19125 -15.98339 -15.41259 -14.99773 -14.53951 -14.40524 -13.87346 -13.65846 -13.50730 -13.08810 -12.86130 -12.84682 -12.65305 -12.41927 -12.33142 -12.24882 -12.04507 -11.96790 -11.66105 -11.42272 -11.26995 -11.12873 -10.83068 -10.78136 -10.30606 -9.87847 -8.85619 -8.00393 -6.06771 1.41075 1.44442 1.54341 2.49097 2.88375 3.30315 3.39802 3.64847 3.73896 4.00341 4.19523 4.23731 4.33145 4.43415 4.44910 4.55129 4.61717 4.68116 4.74245 4.83041 4.87574 4.90986 4.97373 5.01002 5.07486 5.14847 5.16246 5.24993 5.27445 5.31300 5.33475 5.40061 5.58461 5.67416 5.71562 5.76297 5.90967 6.44539 6.60607 6.87188 6.96729 7.58458 9.08433 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.008449 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.764953 B = 3313.016786 C = 4216.926792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 C -0.135 4.135 4 C 0.123 3.877 5 H 0.044 0.956 6 N -0.665 5.665 7 C 0.132 3.868 8 C 0.024 3.976 9 C -0.472 4.472 10 H 0.048 0.952 11 C 0.023 3.977 12 N -0.913 5.913 13 Si 0.941 3.059 14 H -0.269 1.269 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.188 4.188 18 C -0.164 4.164 19 C -0.170 4.170 20 C -0.160 4.160 21 C -0.188 4.188 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.337 0.663 30 H 0.030 0.970 31 H 0.005 0.995 32 H 0.254 0.746 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.861 -8.009 -3.545 14.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 C -0.192 4.192 4 C 0.013 3.987 5 H 0.062 0.938 6 N -0.295 5.295 7 C 0.003 3.997 8 C 0.023 3.977 9 C -0.510 4.510 10 H 0.066 0.934 11 C -0.176 4.176 12 N -0.553 5.553 13 Si 0.769 3.231 14 H -0.193 1.193 15 H -0.212 1.212 16 H -0.212 1.212 17 C -0.225 4.225 18 C -0.203 4.203 19 C -0.190 4.190 20 C -0.197 4.197 21 C -0.226 4.226 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.155 0.845 30 H 0.048 0.952 31 H 0.022 0.978 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.779 -7.188 -3.707 14.288 hybrid contribution 0.688 0.273 0.338 0.814 sum -11.090 -6.915 -3.370 13.497 Atomic orbital electron populations 1.21774 0.93867 1.02299 1.01477 1.20988 0.95587 0.95240 0.97351 1.21645 1.01132 0.96456 1.00009 1.21218 0.87482 0.92618 0.97389 0.93771 1.60300 1.05670 1.35461 1.28022 1.21160 0.93812 0.96693 0.88044 1.18995 0.90942 0.93357 0.94379 1.20521 1.35173 0.95398 0.99911 0.93401 1.25529 0.96549 0.98935 0.96571 1.70121 1.49018 1.13926 1.22232 0.85761 0.77984 0.79074 0.80315 1.19344 1.21245 1.21232 1.22982 1.02678 0.92098 1.04737 1.22377 1.01323 1.02844 0.93714 1.22899 1.04311 0.96295 0.95467 1.22982 0.91310 1.03337 1.02105 1.22950 0.99860 1.00176 0.99566 0.93486 0.92131 0.91377 0.91410 0.93931 0.92575 0.94828 0.84466 0.95166 0.97752 0.93728 0.89436 0.90684 0.92503 0.91488 0.86789 0.89428 0.86940 0.87649 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.94 71.98 0.64 -2.38 16 2 C -0.07 -2.06 2.69 -10.79 -0.03 -2.09 16 3 C -0.13 -4.52 9.04 71.98 0.65 -3.87 16 4 C 0.12 3.78 1.89 44.92 0.09 3.87 16 5 H 0.04 1.51 7.40 -2.39 -0.02 1.49 16 6 N -0.67 -25.28 5.39 -491.56 -2.65 -27.93 16 7 C 0.13 5.85 5.25 86.31 0.45 6.30 16 8 C 0.02 1.16 1.55 -52.93 -0.08 1.08 16 9 C -0.47 -25.84 8.62 25.60 0.22 -25.62 16 10 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 11 C 0.02 1.27 5.43 84.65 0.46 1.73 16 12 N -0.91 -53.35 12.73 21.45 0.27 -53.08 16 13 Si 0.94 45.00 29.54 68.60 2.03 47.03 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 17 C -0.19 -7.94 9.94 30.62 0.30 -7.64 16 18 C -0.16 -7.86 9.25 30.62 0.28 -7.58 16 19 C -0.17 -4.14 3.67 -10.79 -0.04 -4.18 16 20 C -0.16 -3.30 9.86 30.60 0.30 -3.00 16 21 C -0.19 -4.52 10.21 30.59 0.31 -4.21 16 22 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 24 H 0.07 1.31 6.95 -2.39 -0.02 1.30 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.04 1.75 7.60 -2.39 -0.02 1.73 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.34 12.34 8.13 -89.70 -0.73 11.61 16 30 H 0.03 1.55 8.14 -2.39 -0.02 1.54 16 31 H 0.00 0.19 6.54 -2.39 -0.02 0.17 16 32 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.06 2.98 8.14 -2.38 -0.02 2.96 16 36 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 39 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.09 6.59 -2.38 -0.02 2.07 16 Total: -1.00 -58.90 328.57 3.45 -55.45 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.24 Total: 26.11 kcal Atomic # 6 Polarization: -51.14 SS G_CDS: 3.56 Total: -47.57 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -2.38 Total: -81.01 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -58.90 3.45 -55.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380277814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.518 kcal (2) G-P(sol) polarization free energy of solvation -58.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds