Wall clock time and date at job start Sun Mar 29 2020 22:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47287 * 2 1 4 4 C 1.52997 * 109.46949 * 240.00061 * 2 1 3 5 5 C 1.50707 * 109.47121 * 59.99988 * 4 2 1 6 6 H 1.07997 * 119.99961 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99694 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00555 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99617 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47387 * 59.99517 * 9 7 5 11 11 H 1.48503 * 109.47375 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47096 * 299.99894 * 9 7 5 13 13 C 1.52999 * 109.47025 * 120.00276 * 2 1 3 14 14 N 1.46898 * 109.47082 * 299.99643 * 13 2 1 15 15 C 1.46894 * 111.00103 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47344 * 179.97438 * 15 14 13 17 17 C 1.31004 * 119.99903 * 124.99670 * 16 15 14 18 18 C 1.50700 * 119.99903 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.49951 * 188.62081 * 18 17 16 20 20 C 1.53001 * 60.00133 * 252.51191 * 19 18 17 21 21 H 1.09008 * 109.46484 * 300.00015 * 1 2 3 22 22 H 1.09000 * 109.47039 * 59.99532 * 1 2 3 23 23 H 1.08993 * 109.47314 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47644 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47463 * 300.00208 * 3 2 1 26 26 H 1.09003 * 109.47777 * 59.99940 * 3 2 1 27 27 H 1.09003 * 109.47440 * 179.97438 * 4 2 1 28 28 H 1.09002 * 109.47198 * 300.00502 * 4 2 1 29 29 H 0.97002 * 120.00260 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46626 * 179.97438 * 13 2 1 31 31 H 1.09001 * 109.47349 * 59.99918 * 13 2 1 32 32 H 1.00898 * 110.99987 * 56.04842 * 14 13 2 33 33 H 1.08999 * 109.47576 * 59.99426 * 15 14 13 34 34 H 1.09006 * 109.47025 * 300.00216 * 15 14 13 35 35 H 1.07999 * 119.99988 * 304.99597 * 16 15 14 36 36 H 1.07995 * 120.00080 * 359.72973 * 17 16 15 37 37 H 1.09002 * 115.55035 * 334.33088 * 18 17 16 38 38 H 1.09003 * 117.49691 * 0.02562 * 19 18 17 39 39 H 1.09001 * 117.49743 * 145.01768 * 19 18 17 40 40 H 1.08997 * 117.49807 * 252.51229 * 20 19 18 41 41 H 1.08998 * 117.51752 * 107.47865 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6263 -1.5514 -3.8527 9 14 1.2482 0.3989 -5.2572 10 1 1.7442 1.7986 -5.2572 11 1 1.7430 -0.3012 -6.4697 12 1 -0.2368 0.4000 -5.2570 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0219 -0.6946 3.6702 16 6 1.5014 0.0427 4.8771 17 6 0.8172 -0.5987 5.7918 18 6 0.2972 0.1384 6.9989 19 6 -0.3161 -0.6952 8.1258 20 6 -1.2165 0.1494 7.2220 21 1 -0.3632 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 3.1301 1.4425 -0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9564 0.8900 27 1 3.1300 -0.7209 -1.2495 28 1 1.6766 -1.7489 -1.2493 29 1 2.8606 -1.8828 -4.7338 30 1 3.1301 -0.7217 1.2489 31 1 1.6767 -1.7490 1.2492 32 1 0.5439 0.0413 2.4402 33 1 3.1118 -0.6942 3.6868 34 1 1.6587 -1.7222 3.6872 35 1 1.6923 1.0999 4.9879 36 1 0.6225 -1.6550 5.6788 37 1 0.8538 1.0326 7.2796 38 1 -0.3430 -1.7769 7.9942 39 1 -0.1628 -0.3497 9.1482 40 1 -1.6556 1.0507 7.6498 41 1 -1.8361 -0.3762 6.4955 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382299362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:45 Heat of formation + Delta-G solvation = 1.062103 kcal Electronic energy + Delta-G solvation = -16457.070132 eV Core-core repulsion = 13950.465414 eV Total energy + Delta-G solvation = -2506.604718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.33127 -38.51693 -36.34355 -34.50116 -32.80521 -29.08335 -27.89593 -27.60116 -25.82608 -23.91343 -23.20995 -22.17472 -20.55679 -19.48310 -18.32886 -17.09190 -16.60094 -16.43854 -15.76913 -15.52021 -15.21306 -14.75657 -14.31918 -14.13850 -13.87983 -13.64561 -13.24160 -12.96627 -12.73532 -12.71531 -12.42298 -12.38902 -12.24361 -12.16904 -12.09888 -11.89632 -11.77683 -11.37944 -11.20821 -10.86064 -10.73823 -10.49810 -9.71545 -9.31617 -8.13664 -6.20913 1.19329 1.41202 1.43635 1.50917 2.44199 3.06450 3.20076 3.37871 3.76921 4.05044 4.09121 4.14441 4.19322 4.23942 4.35371 4.40440 4.49644 4.72055 4.75170 4.80326 4.81966 4.86457 4.96246 5.05070 5.08113 5.20893 5.21833 5.27154 5.28316 5.51555 5.53782 5.58402 5.65208 5.74920 5.82528 5.87304 5.92795 6.10174 6.37118 6.53831 6.94009 7.46394 8.98603 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.056630 B = 0.003599 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.321119 B = 7777.262874 C = 7926.569353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 C -0.107 4.107 4 C 0.040 3.960 5 C -0.516 4.516 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.081 3.919 14 N -0.680 5.680 15 C 0.087 3.913 16 C -0.147 4.147 17 C -0.126 4.126 18 C -0.138 4.138 19 C -0.172 4.172 20 C -0.173 4.173 21 H 0.067 0.933 22 H 0.047 0.953 23 H 0.036 0.964 24 H 0.030 0.970 25 H 0.039 0.961 26 H 0.067 0.933 27 H -0.016 1.016 28 H -0.016 1.016 29 H 0.260 0.740 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.344 0.656 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 3.311 20.925 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.164 4.164 4 C 0.002 3.998 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.048 4.048 14 N -0.312 5.312 15 C -0.042 4.042 16 C -0.165 4.165 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.209 4.209 20 C -0.210 4.210 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.164 0.836 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.197 3.664 20.799 21.749 hybrid contribution -0.382 -0.879 -1.270 1.591 sum -5.579 2.785 19.528 20.500 Atomic orbital electron populations 1.21684 0.94657 1.00379 1.01208 1.20507 0.95857 0.96158 0.93148 1.21499 0.99129 0.95220 1.00540 1.19006 0.94071 0.93979 0.92703 1.21601 1.30373 1.11943 0.91456 0.91558 1.25932 0.95695 0.95903 1.02611 1.70102 1.38819 1.24963 1.24117 0.85622 0.78964 0.78775 0.78432 1.19323 1.21340 1.19216 1.21840 0.99187 0.94237 0.89563 1.60481 1.16730 1.53451 1.00566 1.21005 1.00378 0.94602 0.88188 1.22632 0.99208 1.00153 0.94527 1.22344 0.98268 0.98991 0.94862 1.21253 0.96522 1.01535 0.96316 1.23058 1.03558 0.98452 0.95848 1.23024 0.91928 1.03019 1.03056 0.91469 0.93349 0.94508 0.95102 0.94206 0.91410 0.99757 0.99801 0.93142 0.92430 0.96472 0.83643 0.90642 0.95121 0.86703 0.87319 0.87078 0.88548 0.87481 0.87585 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 7.89 71.98 0.57 -3.90 16 2 C -0.06 -2.28 0.60 -52.18 -0.03 -2.31 16 3 C -0.11 -4.12 8.06 71.98 0.58 -3.54 16 4 C 0.04 2.10 4.04 29.85 0.12 2.22 16 5 C -0.52 -28.84 7.65 25.60 0.20 -28.65 16 6 H 0.07 3.54 5.68 -2.91 -0.02 3.53 16 7 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 8 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 9 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.08 2.84 4.65 86.30 0.40 3.24 16 14 N -0.68 -19.30 5.70 -517.94 -2.95 -22.25 16 15 C 0.09 2.10 6.12 85.56 0.52 2.62 16 16 C -0.15 -3.05 9.41 25.64 0.24 -2.81 16 17 C -0.13 -2.33 9.27 25.64 0.24 -2.09 16 18 C -0.14 -2.19 5.99 -11.54 -0.07 -2.26 16 19 C -0.17 -2.25 10.23 30.59 0.31 -1.93 16 20 C -0.17 -2.42 10.23 30.60 0.31 -2.11 16 21 H 0.07 2.01 6.57 -2.38 -0.02 1.99 16 22 H 0.05 1.92 6.62 -2.39 -0.02 1.90 16 23 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.04 1.63 6.62 -2.39 -0.02 1.62 16 26 H 0.07 2.27 7.60 -2.39 -0.02 2.26 16 27 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H -0.02 -0.95 8.14 -2.39 -0.02 -0.96 16 29 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.34 9.22 6.76 -89.70 -0.61 8.62 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.03 0.73 7.79 -2.38 -0.02 0.71 16 35 H 0.12 2.38 8.05 -2.91 -0.02 2.35 16 36 H 0.11 1.96 7.84 -2.91 -0.02 1.94 16 37 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -62.29 329.01 3.58 -58.71 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.36 Total: 15.77 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 3.86 Total: -41.33 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.67 Total: -79.91 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.29 3.58 -58.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382299362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.773 kcal (2) G-P(sol) polarization free energy of solvation -62.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds