Wall clock time and date at job start Sun Mar 29 2020 22:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09004 * 110.46047 * 303.27586 * 3 2 1 5 5 C 1.54379 * 110.41235 * 65.69478 * 3 2 1 6 6 H 1.08996 * 110.32608 * 23.62964 * 5 3 2 7 7 C 1.53003 * 110.32119 * 261.52347 * 5 3 2 8 8 C 1.54261 * 105.06156 * 142.63387 * 5 3 2 9 9 C 1.54374 * 105.06018 * 359.97438 * 8 5 3 10 10 N 1.48562 * 110.40901 * 180.86519 * 3 2 1 11 11 C 1.46895 * 110.99758 * 82.18308 * 10 3 2 12 12 C 1.53003 * 109.46816 * 195.48199 * 11 10 3 13 13 C 1.50695 * 115.55294 * 34.33119 * 12 11 10 14 14 H 1.08002 * 119.99465 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00379 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99548 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99781 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47157 * 90.00344 * 17 15 13 19 19 H 1.48507 * 109.46695 * 210.00096 * 17 15 13 20 20 H 1.48494 * 109.47462 * 329.99592 * 17 15 13 21 21 C 1.52999 * 117.49999 * 248.61578 * 12 11 10 22 22 C 1.52996 * 60.00457 * 252.51218 * 21 12 11 23 23 H 1.09001 * 109.47424 * 173.81198 * 1 2 3 24 24 H 1.09006 * 109.46908 * 293.81005 * 1 2 3 25 25 H 1.09000 * 109.46889 * 53.80807 * 1 2 3 26 26 H 1.08997 * 109.46566 * 239.99618 * 2 1 3 27 27 H 1.09002 * 109.46811 * 119.99852 * 2 1 3 28 28 H 1.09008 * 109.46879 * 60.00377 * 7 5 3 29 29 H 1.08993 * 109.47333 * 300.00145 * 7 5 3 30 30 H 1.09001 * 109.47254 * 179.97438 * 7 5 3 31 31 H 1.09000 * 110.32522 * 118.89355 * 8 5 3 32 32 H 1.08999 * 110.32043 * 241.10118 * 8 5 3 33 33 H 1.09001 * 110.41450 * 217.36942 * 9 8 5 34 34 H 1.09000 * 110.51407 * 94.98060 * 9 8 5 35 35 H 1.08995 * 109.47488 * 315.48278 * 11 10 3 36 36 H 1.09001 * 109.47603 * 75.48296 * 11 10 3 37 37 H 0.97000 * 119.99421 * 180.02562 * 16 15 13 38 38 H 1.08998 * 117.49790 * 0.02562 * 21 12 11 39 39 H 1.09004 * 117.49823 * 145.02007 * 21 12 11 40 40 H 1.08997 * 117.49950 * 252.50947 * 22 21 12 41 41 H 1.09005 * 117.51406 * 107.47625 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6388 1.9885 -0.8538 5 6 1.6581 2.1486 1.3186 6 1 1.4971 1.4147 2.1083 7 6 0.4019 2.9995 1.1211 8 6 2.8658 3.0468 1.6568 9 6 3.8761 2.8073 0.5144 10 7 3.5253 1.4668 -0.0210 11 6 4.0352 1.2958 -1.3880 12 6 5.5228 0.9413 -1.3367 13 6 5.9486 0.0921 -0.1668 14 1 5.2197 -0.2235 0.5649 15 6 7.2687 -0.2818 -0.0307 16 7 8.1561 0.1022 -0.9221 17 14 7.7966 -1.3338 1.4198 18 1 7.6860 -2.7694 1.0564 19 1 9.2045 -1.0195 1.7727 20 1 6.9192 -1.0486 2.5834 21 6 6.5160 1.9852 -1.8511 22 6 6.2429 0.7211 -2.6686 23 1 -0.3634 -1.0217 -0.1108 24 1 -0.3633 0.4149 0.9403 25 1 -0.3633 0.6068 -0.8294 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 -0.4240 2.3609 0.8075 29 1 0.5898 3.7526 0.3559 30 1 0.1446 3.4909 2.0595 31 1 2.5636 4.0938 1.6821 32 1 3.2994 2.7538 2.6129 33 1 4.8950 2.8076 0.9017 34 1 3.7644 3.5664 -0.2597 35 1 3.4874 0.4937 -1.8825 36 1 3.9019 2.2236 -1.9443 37 1 9.0848 -0.1612 -0.8265 38 1 6.1097 2.9247 -2.2258 39 1 7.4777 2.0581 -1.3432 40 1 7.0249 -0.0376 -2.6986 41 1 5.6567 0.8285 -3.5814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384285901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:39 Heat of formation + Delta-G solvation = 23.549838 kcal Electronic energy + Delta-G solvation = -18046.713141 eV Core-core repulsion = 15541.083565 eV Total energy + Delta-G solvation = -2505.629577 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.13851 -36.35970 -33.17263 -32.50004 -31.24407 -28.44882 -26.56567 -25.33968 -24.01067 -22.05148 -20.60788 -20.34684 -19.45807 -18.64735 -15.89362 -15.47580 -14.92070 -14.68064 -14.02307 -13.98285 -13.41300 -13.23394 -12.78677 -12.62874 -12.26226 -12.08922 -11.69842 -11.61646 -11.21600 -10.97435 -10.90082 -10.72288 -10.61028 -10.42502 -10.34460 -10.14973 -10.00416 -9.90360 -9.86884 -9.32665 -8.65031 -8.19950 -7.89263 -7.57116 -5.79108 -3.79829 3.38277 3.45047 3.50171 4.52882 4.57230 4.89849 5.01931 5.23044 5.29090 5.42486 5.43747 5.58649 5.65391 5.72335 5.78047 5.84229 5.94310 5.99649 6.05898 6.13361 6.20432 6.26871 6.27351 6.38074 6.46397 6.53089 6.58054 6.66538 6.68779 6.75437 6.85269 7.13197 7.29473 7.38604 7.68946 7.77088 8.01129 8.22623 8.33274 8.75278 9.21749 9.73881 11.18011 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025112 B = 0.007736 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.735485 B = 3618.791925 C = 3829.429998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.062 3.938 4 H 0.040 0.960 5 C -0.090 4.090 6 H 0.076 0.924 7 C -0.145 4.145 8 C -0.121 4.121 9 C 0.044 3.956 10 N -0.478 5.478 11 C 0.092 3.908 12 C 0.027 3.973 13 C -0.441 4.441 14 H 0.075 0.925 15 C 0.048 3.952 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.274 1.274 21 C -0.193 4.193 22 C -0.192 4.192 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.029 0.971 35 H 0.058 0.942 36 H 0.013 0.987 37 H 0.254 0.746 38 H 0.035 0.965 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.923 4.072 2.707 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.047 4.047 4 H 0.058 0.942 5 C -0.109 4.109 6 H 0.094 0.906 7 C -0.203 4.203 8 C -0.159 4.159 9 C -0.084 4.084 10 N -0.200 5.200 11 C -0.036 4.036 12 C 0.026 3.974 13 C -0.479 4.479 14 H 0.093 0.907 15 C -0.151 4.151 16 N -0.530 5.530 17 Si 0.722 3.278 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.199 1.199 21 C -0.231 4.231 22 C -0.230 4.230 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.482 3.613 2.998 13.336 hybrid contribution 0.199 0.188 -0.011 0.274 sum -12.284 3.801 2.987 13.201 Atomic orbital electron populations 1.21838 0.96559 1.01032 1.01311 1.21407 0.94143 0.96034 1.02981 1.22745 0.90422 0.95639 0.95869 0.94213 1.21884 0.94355 0.97114 0.97585 0.90585 1.21959 0.97605 0.99581 1.01120 1.22401 0.95547 0.98492 0.99493 1.22990 1.00160 0.89747 0.95548 1.65278 1.05339 1.27763 1.21651 1.21777 0.97039 0.97343 0.87396 1.18948 0.86530 0.98173 0.93748 1.20673 0.92852 1.27748 1.06590 0.90732 1.25066 0.96999 0.96685 0.96387 1.70033 1.02221 1.46033 1.34669 0.86569 0.77470 0.80558 0.83218 1.21070 1.21705 1.19905 1.22858 1.04420 0.89703 1.06075 1.22818 1.05189 1.02065 0.92972 0.93088 0.92717 0.93268 0.91912 0.91157 0.92434 0.93083 0.92987 0.92155 0.91376 0.89431 0.95242 0.92399 0.96865 0.93560 0.94666 0.87382 0.87185 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.79 37.16 0.33 -1.41 16 2 C -0.11 -1.60 5.55 -26.73 -0.15 -1.75 16 3 C 0.06 0.98 1.87 -66.07 -0.12 0.85 16 4 H 0.04 0.63 7.72 -51.93 -0.40 0.23 16 5 C -0.09 -1.24 2.62 -89.24 -0.23 -1.47 16 6 H 0.08 1.05 7.81 -51.93 -0.41 0.64 16 7 C -0.15 -1.62 8.73 37.16 0.32 -1.29 16 8 C -0.12 -1.78 6.65 -25.35 -0.17 -1.94 16 9 C 0.04 0.79 6.28 -2.19 -0.01 0.78 16 10 N -0.48 -9.30 3.82 -222.16 -0.85 -10.15 16 11 C 0.09 1.97 4.95 -3.83 -0.02 1.95 16 12 C 0.03 0.67 2.29 -155.66 -0.36 0.32 16 13 C -0.44 -12.06 8.70 -34.44 -0.30 -12.36 16 14 H 0.07 2.06 7.22 -52.49 -0.38 1.69 16 15 C 0.05 1.32 5.28 -17.82 -0.09 1.23 16 16 N -0.89 -25.31 8.59 55.43 0.48 -24.83 16 17 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.19 -4.91 9.31 -26.73 -0.25 -5.15 16 22 C -0.19 -4.91 9.38 -26.73 -0.25 -5.16 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.59 6.48 -51.93 -0.34 0.25 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.00 7.25 -51.93 -0.38 0.63 16 27 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 28 H 0.06 0.59 6.03 -51.92 -0.31 0.28 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.77 7.71 -51.93 -0.40 0.37 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 34 H 0.03 0.52 7.67 -51.93 -0.40 0.12 16 35 H 0.06 1.21 7.06 -51.93 -0.37 0.84 16 36 H 0.01 0.28 7.40 -51.93 -0.38 -0.11 16 37 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.03 0.83 8.05 -51.93 -0.42 0.41 16 39 H 0.11 3.04 6.29 -51.93 -0.33 2.71 16 40 H 0.11 3.09 6.28 -51.93 -0.33 2.77 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 309.98 15.07 4.67 4.67 Total: -1.00 -28.01 309.98 -9.37 -37.38 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.34 Total: 1.63 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -1.31 Total: -25.41 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.37 Total: -34.98 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.01 -9.37 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384285901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.934 kcal (2) G-P(sol) polarization free energy of solvation -28.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds