Wall clock time and date at job start Sun Mar 29 2020 22:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09004 * 110.46047 * 303.27586 * 3 2 1 5 5 C 1.54379 * 110.41235 * 65.69478 * 3 2 1 6 6 H 1.08996 * 110.32608 * 23.62964 * 5 3 2 7 7 C 1.53003 * 110.32119 * 261.52347 * 5 3 2 8 8 C 1.54261 * 105.06156 * 142.63387 * 5 3 2 9 9 C 1.54374 * 105.06018 * 359.97438 * 8 5 3 10 10 N 1.48562 * 110.40901 * 180.86519 * 3 2 1 11 11 C 1.46895 * 110.99758 * 82.18308 * 10 3 2 12 12 C 1.53003 * 109.46816 * 195.48199 * 11 10 3 13 13 C 1.50695 * 115.55294 * 34.33119 * 12 11 10 14 14 H 1.08002 * 119.99465 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00379 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99548 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99781 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47157 * 90.00344 * 17 15 13 19 19 H 1.48507 * 109.46695 * 210.00096 * 17 15 13 20 20 H 1.48494 * 109.47462 * 329.99592 * 17 15 13 21 21 C 1.52999 * 117.49999 * 248.61578 * 12 11 10 22 22 C 1.52996 * 60.00457 * 252.51218 * 21 12 11 23 23 H 1.09001 * 109.47424 * 173.81198 * 1 2 3 24 24 H 1.09006 * 109.46908 * 293.81005 * 1 2 3 25 25 H 1.09000 * 109.46889 * 53.80807 * 1 2 3 26 26 H 1.08997 * 109.46566 * 239.99618 * 2 1 3 27 27 H 1.09002 * 109.46811 * 119.99852 * 2 1 3 28 28 H 1.09008 * 109.46879 * 60.00377 * 7 5 3 29 29 H 1.08993 * 109.47333 * 300.00145 * 7 5 3 30 30 H 1.09001 * 109.47254 * 179.97438 * 7 5 3 31 31 H 1.09000 * 110.32522 * 118.89355 * 8 5 3 32 32 H 1.08999 * 110.32043 * 241.10118 * 8 5 3 33 33 H 1.09001 * 110.41450 * 217.36942 * 9 8 5 34 34 H 1.09000 * 110.51407 * 94.98060 * 9 8 5 35 35 H 1.08995 * 109.47488 * 315.48278 * 11 10 3 36 36 H 1.09001 * 109.47603 * 75.48296 * 11 10 3 37 37 H 0.97000 * 119.99421 * 180.02562 * 16 15 13 38 38 H 1.08998 * 117.49790 * 0.02562 * 21 12 11 39 39 H 1.09004 * 117.49823 * 145.02007 * 21 12 11 40 40 H 1.08997 * 117.49950 * 252.50947 * 22 21 12 41 41 H 1.09005 * 117.51406 * 107.47625 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6388 1.9885 -0.8538 5 6 1.6581 2.1486 1.3186 6 1 1.4971 1.4147 2.1083 7 6 0.4019 2.9995 1.1211 8 6 2.8658 3.0468 1.6568 9 6 3.8761 2.8073 0.5144 10 7 3.5253 1.4668 -0.0210 11 6 4.0352 1.2958 -1.3880 12 6 5.5228 0.9413 -1.3367 13 6 5.9486 0.0921 -0.1668 14 1 5.2197 -0.2235 0.5649 15 6 7.2687 -0.2818 -0.0307 16 7 8.1561 0.1022 -0.9221 17 14 7.7966 -1.3338 1.4198 18 1 7.6860 -2.7694 1.0564 19 1 9.2045 -1.0195 1.7727 20 1 6.9192 -1.0486 2.5834 21 6 6.5160 1.9852 -1.8511 22 6 6.2429 0.7211 -2.6686 23 1 -0.3634 -1.0217 -0.1108 24 1 -0.3633 0.4149 0.9403 25 1 -0.3633 0.6068 -0.8294 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 -0.4240 2.3609 0.8075 29 1 0.5898 3.7526 0.3559 30 1 0.1446 3.4909 2.0595 31 1 2.5636 4.0938 1.6821 32 1 3.2994 2.7538 2.6129 33 1 4.8950 2.8076 0.9017 34 1 3.7644 3.5664 -0.2597 35 1 3.4874 0.4937 -1.8825 36 1 3.9019 2.2236 -1.9443 37 1 9.0848 -0.1612 -0.8265 38 1 6.1097 2.9247 -2.2258 39 1 7.4777 2.0581 -1.3432 40 1 7.0249 -0.0376 -2.6986 41 1 5.6567 0.8285 -3.5814 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384285901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:39 Heat of formation + Delta-G solvation = 9.455697 kcal Electronic energy + Delta-G solvation = -18047.324309 eV Core-core repulsion = 15541.083565 eV Total energy + Delta-G solvation = -2506.240744 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49254 -38.24749 -34.50595 -33.84681 -33.17430 -29.67721 -28.07331 -27.16103 -25.47143 -23.18095 -22.64358 -21.75607 -20.93588 -20.30806 -17.87244 -16.93820 -16.58972 -16.21375 -15.56212 -15.17257 -15.02966 -14.91355 -14.06591 -13.86450 -13.54958 -13.24590 -13.11295 -12.94331 -12.89981 -12.64596 -12.46116 -12.35181 -12.19088 -11.95941 -11.90930 -11.79599 -11.52940 -11.31990 -11.22839 -11.02863 -10.69782 -10.22811 -9.95838 -9.07145 -7.91666 -5.98151 1.42610 1.44224 1.54811 2.49202 3.06829 3.25199 3.71854 3.83629 3.98649 4.11719 4.27853 4.38639 4.42098 4.53892 4.54047 4.59752 4.64181 4.74133 4.78467 4.81318 4.85492 4.95576 5.02064 5.11119 5.13005 5.21171 5.24982 5.26811 5.32366 5.34744 5.40675 5.45164 5.54524 5.59580 5.70796 6.01807 6.20897 6.26094 6.42539 6.68030 7.06761 7.57824 9.03294 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025112 B = 0.007736 C = 0.007310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.735485 B = 3618.791925 C = 3829.429998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.062 3.938 4 H 0.045 0.955 5 C -0.085 4.085 6 H 0.076 0.924 7 C -0.139 4.139 8 C -0.115 4.115 9 C 0.042 3.958 10 N -0.501 5.501 11 C 0.103 3.897 12 C 0.020 3.980 13 C -0.452 4.452 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.911 5.911 17 Si 0.952 3.048 18 H -0.281 1.281 19 H -0.290 1.290 20 H -0.271 1.271 21 C -0.190 4.190 22 C -0.194 4.194 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.032 0.968 35 H 0.059 0.941 36 H 0.019 0.981 37 H 0.252 0.748 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.230 4.530 3.473 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.063 0.937 5 C -0.104 4.104 6 H 0.095 0.905 7 C -0.196 4.196 8 C -0.153 4.153 9 C -0.086 4.086 10 N -0.224 5.224 11 C -0.025 4.025 12 C 0.020 3.980 13 C -0.490 4.490 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.551 5.551 17 Si 0.779 3.221 18 H -0.207 1.207 19 H -0.216 1.216 20 H -0.195 1.195 21 C -0.228 4.228 22 C -0.233 4.233 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.803 4.072 3.767 15.808 hybrid contribution 0.947 0.042 -0.265 0.985 sum -13.856 4.114 3.502 14.872 Atomic orbital electron populations 1.21770 0.93666 1.02030 1.02399 1.21396 0.96625 0.95094 1.01341 1.22852 0.87866 0.96561 0.97329 0.93728 1.21872 0.95163 0.97135 0.96195 0.90513 1.21913 0.96287 0.99331 1.02095 1.22382 0.94947 1.00216 0.97725 1.22938 0.99490 0.89349 0.96806 1.65177 1.08130 1.28749 1.20382 1.21557 0.94493 0.97566 0.88899 1.19127 0.88808 0.97408 0.92697 1.20859 0.92842 1.28106 1.07206 0.91532 1.25748 0.97195 0.97943 0.98696 1.70189 1.02179 1.46821 1.35921 0.85638 0.76903 0.79040 0.80480 1.20701 1.21629 1.19534 1.22688 1.03368 0.90587 1.06169 1.22709 1.04967 1.01294 0.94287 0.92197 0.91379 0.92378 0.93746 0.92648 0.91242 0.93052 0.91352 0.89779 0.91737 0.92757 0.94966 0.92226 0.96245 0.93865 0.92700 0.90333 0.90022 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.79 71.98 0.63 -2.23 16 2 C -0.11 -3.02 5.55 30.59 0.17 -2.85 16 3 C 0.06 1.85 1.87 45.06 0.08 1.93 16 4 H 0.04 1.30 7.72 -2.39 -0.02 1.29 16 5 C -0.08 -2.10 2.62 -9.90 -0.03 -2.12 16 6 H 0.08 1.91 7.81 -2.39 -0.02 1.89 16 7 C -0.14 -2.55 8.73 71.98 0.63 -1.92 16 8 C -0.11 -3.14 6.65 31.49 0.21 -2.93 16 9 C 0.04 1.51 6.28 86.45 0.54 2.06 16 10 N -0.50 -19.30 3.82 -856.78 -3.27 -22.57 16 11 C 0.10 4.36 4.95 86.31 0.43 4.79 16 12 C 0.02 1.03 2.29 -52.93 -0.12 0.91 16 13 C -0.45 -25.16 8.70 25.60 0.22 -24.94 16 14 H 0.07 3.74 7.22 -2.91 -0.02 3.72 16 15 C 0.00 0.06 5.28 84.66 0.45 0.51 16 16 N -0.91 -53.07 8.59 21.45 0.18 -52.89 16 17 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 21 C -0.19 -9.81 9.31 30.59 0.28 -9.52 16 22 C -0.19 -10.01 9.38 30.60 0.29 -9.72 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.21 6.48 -2.38 -0.02 1.20 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.04 1.39 7.25 -2.39 -0.02 1.38 16 27 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16 28 H 0.07 1.12 6.03 -2.38 -0.01 1.11 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.90 7.71 -2.39 -0.02 1.88 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.03 1.11 7.67 -2.39 -0.02 1.10 16 35 H 0.06 2.46 7.06 -2.39 -0.02 2.44 16 36 H 0.02 0.79 7.40 -2.39 -0.02 0.77 16 37 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.05 2.56 8.05 -2.39 -0.02 2.54 16 39 H 0.08 4.54 6.29 -2.38 -0.01 4.53 16 40 H 0.08 4.70 6.28 -2.39 -0.01 4.69 16 41 H 0.06 2.79 8.14 -2.38 -0.02 2.77 16 Total: -1.00 -60.56 309.98 3.70 -56.86 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.97 Total: 17.32 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 3.79 Total: -46.03 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -3.09 Total: -75.45 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -60.56 3.70 -56.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384285901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.319 kcal (2) G-P(sol) polarization free energy of solvation -60.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds