Wall clock time and date at job start Sun Mar 29 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.46801 * 2 1 4 4 H 1.08997 * 110.72350 * 303.22400 * 3 2 1 5 5 C 1.54942 * 110.66300 * 180.13021 * 3 2 1 6 6 H 1.08996 * 110.72754 * 322.50817 * 5 3 2 7 7 C 1.52999 * 110.87762 * 85.72399 * 5 3 2 8 8 C 1.54595 * 102.91670 * 204.15033 * 5 3 2 9 9 C 1.53997 * 105.14422 * 21.95852 * 8 5 3 10 10 N 1.47906 * 107.05187 * 1.22347 * 9 8 5 11 11 C 1.46902 * 110.99501 * 214.15400 * 10 9 8 12 12 C 1.53000 * 109.47250 * 302.06345 * 11 10 9 13 13 C 1.50696 * 115.54909 * 302.63745 * 12 11 10 14 14 H 1.07996 * 120.00357 * 95.27687 * 13 12 11 15 15 C 1.37876 * 120.00176 * 275.54730 * 13 12 11 16 16 N 1.31512 * 120.00358 * 191.53049 * 15 13 12 17 17 Si 1.86802 * 119.99883 * 11.53376 * 15 13 12 18 18 H 1.48505 * 109.47200 * 94.58278 * 17 15 13 19 19 H 1.48505 * 109.47090 * 214.58305 * 17 15 13 20 20 H 1.48501 * 109.46981 * 334.57958 * 17 15 13 21 21 C 1.52999 * 117.49793 * 88.31292 * 12 11 10 22 22 C 1.53003 * 117.49400 * 156.97089 * 12 11 10 23 23 H 1.08999 * 109.47476 * 158.83318 * 1 2 3 24 24 H 1.09006 * 109.47071 * 278.82985 * 1 2 3 25 25 H 1.09002 * 109.47861 * 38.83158 * 1 2 3 26 26 H 1.09003 * 109.47021 * 240.00561 * 2 1 3 27 27 H 1.08999 * 109.47544 * 119.99996 * 2 1 3 28 28 H 1.08997 * 109.47092 * 175.04011 * 7 5 3 29 29 H 1.09000 * 109.47080 * 295.03873 * 7 5 3 30 30 H 1.09000 * 109.47017 * 55.03935 * 7 5 3 31 31 H 1.08999 * 110.31040 * 263.04249 * 8 5 3 32 32 H 1.09004 * 110.30946 * 140.87651 * 8 5 3 33 33 H 1.08996 * 109.91740 * 241.87491 * 9 8 5 34 34 H 1.08994 * 110.08211 * 120.66341 * 9 8 5 35 35 H 1.09003 * 109.46760 * 182.06336 * 11 10 9 36 36 H 1.08997 * 109.47103 * 62.06626 * 11 10 9 37 37 H 0.97002 * 120.00732 * 180.02562 * 16 15 13 38 38 H 1.09004 * 117.49267 * 215.00277 * 21 12 11 39 39 H 1.08999 * 117.49685 * 0.02562 * 21 12 11 40 40 H 1.08989 * 117.50243 * 359.97324 * 22 12 11 41 41 H 1.09007 * 117.49591 * 144.97718 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6418 1.9924 -0.8528 5 6 3.5889 1.4749 -0.0033 6 1 3.9928 0.6738 0.6157 7 6 4.1332 1.3808 -1.4301 8 6 3.9071 2.8563 0.6136 9 6 2.6466 3.2411 1.4103 10 7 1.6884 2.1228 1.2727 11 6 0.3050 2.6159 1.2415 12 6 0.0174 3.4092 2.5178 13 6 0.2256 2.6607 3.8091 14 1 1.1628 2.7475 4.3386 15 6 -0.7785 1.8606 4.3117 16 7 -0.6933 1.3902 5.5369 17 14 -2.2599 1.4448 3.2525 18 1 -2.0343 0.1426 2.5752 19 1 -3.4705 1.3546 4.1080 20 1 -2.4527 2.5066 2.2324 21 6 0.3406 4.9046 2.5080 22 6 -1.1161 4.4358 2.4711 23 1 -0.3634 -0.9583 -0.3711 24 1 -0.3633 0.1578 1.0155 25 1 -0.3635 0.8005 -0.6444 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 5.2172 1.4939 -1.4136 29 1 3.8756 0.4102 -1.8540 30 1 3.6946 2.1712 -2.0391 31 1 4.0955 3.5874 -0.1726 32 1 4.7678 2.7845 1.2786 33 1 2.2132 4.1538 1.0015 34 1 2.8980 3.3875 2.4607 35 1 -0.3805 1.7709 1.1767 36 1 0.1689 3.2616 0.3740 37 1 -1.3995 0.8270 5.8904 38 1 0.7039 5.3470 3.4356 39 1 0.7577 5.3234 1.5922 40 1 -1.6566 4.5464 1.5311 41 1 -1.7115 4.5696 3.3743 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384285903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:41 Heat of formation + Delta-G solvation = 24.464313 kcal Electronic energy + Delta-G solvation = -18372.459532 eV Core-core repulsion = 15866.869610 eV Total energy + Delta-G solvation = -2505.589922 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.29299 -36.61308 -33.10722 -32.40781 -31.88570 -28.51748 -26.85045 -25.45623 -23.91917 -22.31262 -21.41605 -20.00574 -19.73050 -18.61636 -16.16959 -15.81652 -14.86094 -14.66099 -14.06418 -13.80499 -13.63932 -13.38552 -12.87824 -12.60812 -12.33986 -12.24070 -12.05872 -11.97469 -11.70085 -11.27813 -10.91638 -10.81190 -10.55312 -10.52156 -10.43591 -10.29219 -10.08108 -9.98589 -9.73656 -9.36354 -8.81609 -8.41224 -8.30333 -7.53911 -5.96078 -3.91834 3.36223 3.45616 3.50552 4.50177 4.55580 4.83657 4.95049 5.08921 5.25789 5.33753 5.48434 5.51454 5.56872 5.63283 5.76497 5.82021 5.86138 5.93668 5.98058 6.06498 6.08299 6.19459 6.21502 6.26088 6.30503 6.33257 6.45391 6.47417 6.53728 6.58546 6.69810 6.72664 6.78257 6.88606 7.18013 7.25015 7.68280 7.87067 7.97324 8.68241 9.10141 9.69648 11.16653 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025146 B = 0.009720 C = 0.008422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.251625 B = 2880.056474 C = 3323.988820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C 0.065 3.935 4 H 0.042 0.958 5 C -0.092 4.092 6 H 0.082 0.918 7 C -0.140 4.140 8 C -0.128 4.128 9 C 0.046 3.954 10 N -0.481 5.481 11 C 0.075 3.925 12 C 0.007 3.993 13 C -0.457 4.457 14 H 0.075 0.925 15 C 0.078 3.922 16 N -0.902 5.902 17 Si 0.857 3.143 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.248 1.248 21 C -0.188 4.188 22 C -0.189 4.189 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.004 0.996 37 H 0.261 0.739 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.685 0.677 -13.075 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.141 4.141 3 C -0.044 4.044 4 H 0.059 0.941 5 C -0.111 4.111 6 H 0.100 0.900 7 C -0.198 4.198 8 C -0.166 4.166 9 C -0.082 4.082 10 N -0.205 5.205 11 C -0.053 4.053 12 C 0.006 3.994 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.123 4.123 16 N -0.540 5.540 17 Si 0.685 3.315 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.172 1.172 21 C -0.225 4.225 22 C -0.227 4.227 23 H 0.065 0.935 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.615 0.217 -12.485 13.691 hybrid contribution -1.052 0.319 -1.154 1.594 sum 4.563 0.536 -13.638 14.391 Atomic orbital electron populations 1.22054 0.96420 1.00383 1.02827 1.21381 0.95682 0.95548 1.01528 1.22910 0.94016 0.95491 0.91975 0.94060 1.22067 0.95029 0.97985 0.96030 0.90000 1.21771 1.00434 1.01435 0.96111 1.22519 0.98752 0.96342 0.99035 1.22775 0.91459 0.93004 1.00981 1.64599 1.02353 1.23434 1.30080 1.22325 0.89837 0.97979 0.95144 1.19423 0.97607 0.87261 0.95133 1.20067 1.01604 1.25805 1.01978 0.90651 1.24847 0.97594 0.95611 0.94208 1.69927 1.34352 1.35278 1.14439 0.87227 0.82802 0.79609 0.81904 1.20528 1.22204 1.17205 1.22920 0.98550 1.00715 1.00340 1.22967 0.91224 1.08031 1.00527 0.93534 0.90976 0.93402 0.92572 0.90858 0.92810 0.92745 0.93072 0.92306 0.91524 0.94355 0.90012 0.90205 0.97830 0.92945 0.89763 0.91573 0.91589 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 8.35 37.15 0.31 -2.33 16 2 C -0.10 -1.60 5.68 -26.73 -0.15 -1.76 16 3 C 0.06 1.04 1.90 -65.78 -0.13 0.91 16 4 H 0.04 0.66 7.80 -51.93 -0.40 0.26 16 5 C -0.09 -1.27 3.09 -88.76 -0.27 -1.54 16 6 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 7 C -0.14 -1.54 9.16 37.16 0.34 -1.20 16 8 C -0.13 -1.82 6.51 -25.37 -0.17 -1.98 16 9 C 0.05 0.81 5.35 -2.75 -0.01 0.80 16 10 N -0.48 -9.41 4.79 -222.62 -1.07 -10.47 16 11 C 0.07 1.57 3.92 -3.82 -0.01 1.56 16 12 C 0.01 0.16 0.44 -155.66 -0.07 0.09 16 13 C -0.46 -12.69 9.10 -34.44 -0.31 -13.00 16 14 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 15 C 0.08 2.26 5.46 -17.82 -0.10 2.16 16 16 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 17 Si 0.86 21.40 25.07 -169.99 -4.26 17.14 16 18 H -0.28 -6.86 6.72 56.52 0.38 -6.48 16 19 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 20 H -0.25 -5.80 5.41 56.52 0.31 -5.50 16 21 C -0.19 -3.89 8.69 -26.69 -0.23 -4.12 16 22 C -0.19 -4.12 7.27 -26.69 -0.19 -4.32 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.44 5.62 -51.93 -0.29 1.15 16 25 H 0.05 0.75 7.52 -51.93 -0.39 0.36 16 26 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.67 5.91 -51.93 -0.31 0.37 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 35 H 0.08 1.74 2.51 -51.93 -0.13 1.61 16 36 H 0.00 0.07 7.96 -51.93 -0.41 -0.34 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 39 H 0.07 1.23 6.97 -51.93 -0.36 0.86 16 40 H 0.07 1.32 8.14 -51.94 -0.42 0.90 16 41 H 0.09 1.94 8.00 -51.93 -0.42 1.53 16 LS Contribution 303.86 15.07 4.58 4.58 Total: -1.00 -29.44 303.86 -8.41 -37.85 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.44 Total: 2.61 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -1.00 Total: -24.74 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.29 Total: -37.44 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.26 Total: 17.14 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.44 -8.41 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384285903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.317 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds