Wall clock time and date at job start Sun Mar 29 2020 22:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.46801 * 2 1 4 4 H 1.08997 * 110.72350 * 303.22400 * 3 2 1 5 5 C 1.54942 * 110.66300 * 180.13021 * 3 2 1 6 6 H 1.08996 * 110.72754 * 322.50817 * 5 3 2 7 7 C 1.52999 * 110.87762 * 85.72399 * 5 3 2 8 8 C 1.54595 * 102.91670 * 204.15033 * 5 3 2 9 9 C 1.53997 * 105.14422 * 21.95852 * 8 5 3 10 10 N 1.47906 * 107.05187 * 1.22347 * 9 8 5 11 11 C 1.46902 * 110.99501 * 214.15400 * 10 9 8 12 12 C 1.53000 * 109.47250 * 302.06345 * 11 10 9 13 13 C 1.50696 * 115.54909 * 302.63745 * 12 11 10 14 14 H 1.07996 * 120.00357 * 95.27687 * 13 12 11 15 15 C 1.37876 * 120.00176 * 275.54730 * 13 12 11 16 16 N 1.31512 * 120.00358 * 191.53049 * 15 13 12 17 17 Si 1.86802 * 119.99883 * 11.53376 * 15 13 12 18 18 H 1.48505 * 109.47200 * 94.58278 * 17 15 13 19 19 H 1.48505 * 109.47090 * 214.58305 * 17 15 13 20 20 H 1.48501 * 109.46981 * 334.57958 * 17 15 13 21 21 C 1.52999 * 117.49793 * 88.31292 * 12 11 10 22 22 C 1.53003 * 117.49400 * 156.97089 * 12 11 10 23 23 H 1.08999 * 109.47476 * 158.83318 * 1 2 3 24 24 H 1.09006 * 109.47071 * 278.82985 * 1 2 3 25 25 H 1.09002 * 109.47861 * 38.83158 * 1 2 3 26 26 H 1.09003 * 109.47021 * 240.00561 * 2 1 3 27 27 H 1.08999 * 109.47544 * 119.99996 * 2 1 3 28 28 H 1.08997 * 109.47092 * 175.04011 * 7 5 3 29 29 H 1.09000 * 109.47080 * 295.03873 * 7 5 3 30 30 H 1.09000 * 109.47017 * 55.03935 * 7 5 3 31 31 H 1.08999 * 110.31040 * 263.04249 * 8 5 3 32 32 H 1.09004 * 110.30946 * 140.87651 * 8 5 3 33 33 H 1.08996 * 109.91740 * 241.87491 * 9 8 5 34 34 H 1.08994 * 110.08211 * 120.66341 * 9 8 5 35 35 H 1.09003 * 109.46760 * 182.06336 * 11 10 9 36 36 H 1.08997 * 109.47103 * 62.06626 * 11 10 9 37 37 H 0.97002 * 120.00732 * 180.02562 * 16 15 13 38 38 H 1.09004 * 117.49267 * 215.00277 * 21 12 11 39 39 H 1.08999 * 117.49685 * 0.02562 * 21 12 11 40 40 H 1.08989 * 117.50243 * 359.97324 * 22 12 11 41 41 H 1.09007 * 117.49591 * 144.97718 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6418 1.9924 -0.8528 5 6 3.5889 1.4749 -0.0033 6 1 3.9928 0.6738 0.6157 7 6 4.1332 1.3808 -1.4301 8 6 3.9071 2.8563 0.6136 9 6 2.6466 3.2411 1.4103 10 7 1.6884 2.1228 1.2727 11 6 0.3050 2.6159 1.2415 12 6 0.0174 3.4092 2.5178 13 6 0.2256 2.6607 3.8091 14 1 1.1628 2.7475 4.3386 15 6 -0.7785 1.8606 4.3117 16 7 -0.6933 1.3902 5.5369 17 14 -2.2599 1.4448 3.2525 18 1 -2.0343 0.1426 2.5752 19 1 -3.4705 1.3546 4.1080 20 1 -2.4527 2.5066 2.2324 21 6 0.3406 4.9046 2.5080 22 6 -1.1161 4.4358 2.4711 23 1 -0.3634 -0.9583 -0.3711 24 1 -0.3633 0.1578 1.0155 25 1 -0.3635 0.8005 -0.6444 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 5.2172 1.4939 -1.4136 29 1 3.8756 0.4102 -1.8540 30 1 3.6946 2.1712 -2.0391 31 1 4.0955 3.5874 -0.1726 32 1 4.7678 2.7845 1.2786 33 1 2.2132 4.1538 1.0015 34 1 2.8980 3.3875 2.4607 35 1 -0.3805 1.7709 1.1767 36 1 0.1689 3.2616 0.3740 37 1 -1.3995 0.8270 5.8904 38 1 0.7039 5.3470 3.4356 39 1 0.7577 5.3234 1.5922 40 1 -1.6566 4.5464 1.5311 41 1 -1.7115 4.5696 3.3743 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384285903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:41 Heat of formation + Delta-G solvation = 6.082207 kcal Electronic energy + Delta-G solvation = -18373.256640 eV Core-core repulsion = 15866.869610 eV Total energy + Delta-G solvation = -2506.387030 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66790 -38.27234 -34.33136 -34.18529 -33.62239 -29.76311 -28.34923 -27.34765 -25.27482 -23.75539 -23.02442 -21.33312 -21.03947 -20.38037 -18.15609 -17.19955 -16.60138 -16.16255 -15.53964 -15.27723 -15.14753 -14.79189 -14.46579 -14.04497 -13.96103 -13.55326 -13.38178 -13.17054 -13.10813 -12.82063 -12.60207 -12.43703 -12.17787 -11.96585 -11.81553 -11.64319 -11.51436 -11.33373 -11.23508 -11.11888 -10.63288 -10.53426 -10.14914 -8.97694 -8.20015 -6.19063 1.36903 1.38981 1.51316 2.44115 3.05431 3.15984 3.42023 3.71949 3.79684 4.10516 4.19293 4.24195 4.33331 4.39757 4.40351 4.49376 4.56196 4.58815 4.62134 4.74764 4.78903 4.85542 4.89143 4.94063 4.97127 5.07821 5.09625 5.14524 5.21739 5.28436 5.37579 5.40503 5.41221 5.47045 5.55581 5.58420 5.80201 6.29470 6.40959 6.52908 6.85002 7.45510 8.96671 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025146 B = 0.009720 C = 0.008422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.251625 B = 2880.056474 C = 3323.988820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.102 4.102 3 C 0.064 3.936 4 H 0.053 0.947 5 C -0.088 4.088 6 H 0.071 0.929 7 C -0.132 4.132 8 C -0.121 4.121 9 C 0.047 3.953 10 N -0.514 5.514 11 C 0.083 3.917 12 C -0.017 4.017 13 C -0.448 4.448 14 H 0.024 0.976 15 C 0.019 3.981 16 N -0.955 5.955 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.302 1.302 20 H -0.218 1.218 21 C -0.169 4.169 22 C -0.186 4.186 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.023 0.977 37 H 0.260 0.740 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.717 1.171 -16.890 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.140 4.140 3 C -0.044 4.044 4 H 0.071 0.929 5 C -0.107 4.107 6 H 0.089 0.911 7 C -0.190 4.190 8 C -0.159 4.159 9 C -0.081 4.081 10 N -0.238 5.238 11 C -0.045 4.045 12 C -0.018 4.018 13 C -0.486 4.486 14 H 0.042 0.958 15 C -0.177 4.177 16 N -0.597 5.597 17 Si 0.743 3.257 18 H -0.200 1.200 19 H -0.229 1.229 20 H -0.140 1.140 21 C -0.207 4.207 22 C -0.224 4.224 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.663 0.729 -16.325 17.295 hybrid contribution -0.952 0.195 0.120 0.979 sum 4.711 0.924 -16.205 16.901 Atomic orbital electron populations 1.22016 0.97070 1.01841 1.00589 1.21401 0.95091 0.95494 1.01998 1.23019 0.95591 0.95263 0.90533 0.92943 1.22058 0.93467 0.97214 0.97948 0.91092 1.21720 1.01214 1.02315 0.93743 1.22495 0.96933 0.97254 0.99261 1.22690 0.92932 0.92936 0.99575 1.64498 1.01992 1.24388 1.32872 1.22131 0.90761 0.97508 0.94094 1.19343 1.00040 0.88267 0.94130 1.20162 0.99242 1.25662 1.03528 0.95763 1.25661 1.01050 0.95745 0.95199 1.70086 1.35831 1.37080 1.16662 0.86246 0.78513 0.80323 0.80601 1.20043 1.22900 1.14018 1.22900 0.97953 0.98597 1.01204 1.23008 0.91461 1.06651 1.01278 0.91647 0.94892 0.92402 0.89282 0.93106 0.91437 0.91740 0.92368 0.89948 0.91196 0.93926 0.93548 0.91035 0.95875 0.93131 0.91060 0.88496 0.88690 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 8.35 71.98 0.60 -4.29 16 2 C -0.10 -2.94 5.68 30.59 0.17 -2.77 16 3 C 0.06 1.89 1.90 45.27 0.09 1.98 16 4 H 0.05 1.46 7.80 -2.39 -0.02 1.45 16 5 C -0.09 -2.19 3.09 -9.59 -0.03 -2.22 16 6 H 0.07 1.92 8.05 -2.39 -0.02 1.90 16 7 C -0.13 -2.35 9.16 71.98 0.66 -1.70 16 8 C -0.12 -3.17 6.51 31.47 0.20 -2.96 16 9 C 0.05 1.61 5.35 86.45 0.46 2.08 16 10 N -0.51 -19.65 4.79 -858.25 -4.11 -23.76 16 11 C 0.08 3.34 3.92 86.30 0.34 3.68 16 12 C -0.02 -0.77 0.44 -52.93 -0.02 -0.79 16 13 C -0.45 -25.86 9.10 25.60 0.23 -25.62 16 14 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 15 C 0.02 1.14 5.46 84.65 0.46 1.61 16 16 N -0.96 -61.63 13.96 21.45 0.30 -61.33 16 17 Si 0.92 44.85 25.07 68.60 1.72 46.57 16 18 H -0.27 -13.11 6.72 99.48 0.67 -12.44 16 19 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 20 H -0.22 -9.46 5.41 99.48 0.54 -8.92 16 21 C -0.17 -6.75 8.69 30.62 0.27 -6.49 16 22 C -0.19 -7.69 7.27 30.62 0.22 -7.47 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.03 1.27 5.62 -2.38 -0.01 1.26 16 25 H 0.06 1.64 7.52 -2.39 -0.02 1.63 16 26 H 0.09 1.98 8.10 -2.39 -0.02 1.96 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 30 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 31 H 0.08 1.78 7.85 -2.39 -0.02 1.76 16 32 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.04 1.41 5.91 -2.39 -0.01 1.39 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 3.00 2.51 -2.39 -0.01 3.00 16 36 H 0.02 0.84 7.96 -2.39 -0.02 0.82 16 37 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 38 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 39 H 0.10 3.28 6.97 -2.39 -0.02 3.26 16 40 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.07 3.12 8.00 -2.38 -0.02 3.10 16 Total: -1.00 -66.88 303.86 2.33 -64.56 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.76 Total: 18.94 kcal Atomic # 6 Polarization: -48.62 SS G_CDS: 3.66 Total: -44.97 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -3.81 Total: -85.09 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.72 Total: 46.57 kcal Total: -66.88 2.33 -64.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384285903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.638 kcal (2) G-P(sol) polarization free energy of solvation -66.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds