Wall clock time and date at job start Sun Mar 29 2020 22:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47218 * 2 1 4 4 H 1.09005 * 110.06117 * 299.87046 * 3 2 1 5 5 C 1.53993 * 109.91834 * 178.66516 * 3 2 1 6 6 H 1.09001 * 110.30613 * 120.50782 * 5 3 2 7 7 C 1.53002 * 110.39205 * 358.38035 * 5 3 2 8 8 C 1.54589 * 105.13921 * 239.42362 * 5 3 2 9 9 C 1.54937 * 102.92455 * 338.04254 * 8 5 3 10 10 N 1.47895 * 109.91550 * 61.07400 * 3 2 1 11 11 C 1.46903 * 111.00432 * 265.20093 * 10 3 2 12 12 C 1.52990 * 109.47564 * 176.77153 * 11 10 3 13 13 C 1.50701 * 115.54960 * 295.31542 * 12 11 10 14 14 H 1.08001 * 120.00363 * 95.03451 * 13 12 11 15 15 C 1.37886 * 119.99727 * 275.03506 * 13 12 11 16 16 N 1.31518 * 119.99656 * 174.99212 * 15 13 12 17 17 Si 1.86797 * 119.99938 * 354.99574 * 15 13 12 18 18 H 1.48500 * 109.47122 * 274.98052 * 17 15 13 19 19 H 1.48501 * 109.46965 * 34.98220 * 17 15 13 20 20 H 1.48502 * 109.47134 * 154.98170 * 17 15 13 21 21 C 1.53005 * 117.50189 * 80.98099 * 12 11 10 22 22 C 1.53004 * 117.50281 * 149.64396 * 12 11 10 23 23 H 1.08993 * 109.46970 * 291.84267 * 1 2 3 24 24 H 1.09002 * 109.47080 * 51.84304 * 1 2 3 25 25 H 1.09006 * 109.46944 * 171.83931 * 1 2 3 26 26 H 1.09005 * 109.47354 * 240.00116 * 2 1 3 27 27 H 1.08998 * 109.47543 * 119.99836 * 2 1 3 28 28 H 1.08997 * 109.47375 * 302.78285 * 7 5 3 29 29 H 1.09002 * 109.46770 * 62.77978 * 7 5 3 30 30 H 1.09003 * 109.46992 * 182.77550 * 7 5 3 31 31 H 1.09003 * 110.72402 * 219.68567 * 8 5 3 32 32 H 1.09000 * 110.87867 * 96.47177 * 8 5 3 33 33 H 1.09000 * 110.66684 * 278.98197 * 9 8 5 34 34 H 1.08997 * 110.67086 * 155.84727 * 9 8 5 35 35 H 1.08997 * 109.47194 * 56.76306 * 11 10 3 36 36 H 1.09000 * 109.46521 * 296.76823 * 11 10 3 37 37 H 0.96997 * 119.99297 * 180.02562 * 16 15 13 38 38 H 1.09002 * 117.50190 * 215.00394 * 21 12 11 39 39 H 1.08994 * 117.49400 * 0.02687 * 21 12 11 40 40 H 1.08994 * 117.49633 * 359.97438 * 22 12 11 41 41 H 1.09000 * 117.50058 * 144.97122 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6839 1.9651 -0.8879 5 6 3.5796 1.4547 0.0337 6 1 3.9731 1.9697 -0.8426 7 6 4.1227 0.0257 0.0973 8 6 3.9491 2.2268 1.3209 9 6 2.6746 3.0617 1.6022 10 7 1.5739 2.1417 1.2170 11 6 0.3340 2.8848 0.9551 12 6 -0.1596 3.5270 2.2530 13 6 -0.5721 2.5658 3.3379 14 1 0.1323 2.2846 4.1068 15 6 -1.8489 2.0454 3.3489 16 7 -2.1793 1.1325 4.2362 17 14 -3.1093 2.6368 2.1035 18 1 -3.7619 3.8716 2.6079 19 1 -2.4327 2.9259 0.8136 20 1 -4.1353 1.5828 1.8989 21 6 0.4951 4.8408 2.6847 22 6 -0.9357 4.8408 2.1406 23 1 -0.3633 0.3823 0.9538 24 1 -0.3633 0.6349 -0.8081 25 1 -0.3633 -1.0173 -0.1459 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7125 -0.4804 0.9712 29 1 3.8326 -0.5137 -0.8044 30 1 5.2099 0.0532 0.1702 31 1 4.8061 2.8778 1.1476 32 1 4.1489 1.5391 2.1427 33 1 2.6590 3.9599 0.9849 34 1 2.6087 3.3190 2.6593 35 1 -0.4258 2.2015 0.5759 36 1 0.5257 3.6619 0.2152 37 1 -3.0773 0.7661 4.2436 38 1 0.6274 5.0099 3.7534 39 1 1.2772 5.2477 2.0438 40 1 -1.0943 5.2477 1.1420 41 1 -1.7450 5.0097 2.8510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384285906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:46 Heat of formation + Delta-G solvation = 24.788435 kcal Electronic energy + Delta-G solvation = -18413.943033 eV Core-core repulsion = 15908.367166 eV Total energy + Delta-G solvation = -2505.575867 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.37976 -36.71091 -32.82448 -32.54684 -31.90503 -28.38261 -26.60224 -25.39838 -24.10202 -22.32707 -21.58458 -20.51875 -18.98241 -18.43735 -16.39577 -15.51856 -14.98450 -14.74043 -14.31851 -13.67395 -13.56405 -13.37426 -12.82717 -12.71679 -12.51231 -12.07952 -11.98591 -11.49697 -11.32836 -11.29732 -11.02067 -10.84795 -10.49617 -10.45704 -10.40492 -10.17326 -10.01441 -9.97336 -9.81208 -9.39121 -8.94740 -8.43969 -8.33639 -7.57383 -5.96400 -3.94343 3.35443 3.44695 3.48158 4.48393 4.52848 4.87152 5.00114 5.04621 5.20928 5.32211 5.52253 5.63479 5.65582 5.71723 5.83638 5.86672 5.91073 5.98367 6.02673 6.09952 6.18211 6.19093 6.24078 6.26378 6.37487 6.47525 6.47938 6.49895 6.51194 6.57356 6.65504 6.79436 6.82564 7.08062 7.13330 7.27666 7.65487 7.85872 7.95385 8.67897 9.09762 9.67585 11.16287 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025834 B = 0.009700 C = 0.008283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.602286 B = 2886.050623 C = 3379.755955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.101 4.101 3 C 0.066 3.934 4 H 0.039 0.961 5 C -0.098 4.098 6 H 0.065 0.935 7 C -0.141 4.141 8 C -0.120 4.120 9 C 0.042 3.958 10 N -0.480 5.480 11 C 0.081 3.919 12 C 0.015 3.985 13 C -0.458 4.458 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.281 1.281 19 H -0.263 1.263 20 H -0.297 1.297 21 C -0.184 4.184 22 C -0.209 4.209 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.003 0.997 37 H 0.261 0.739 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.538 1.035 -9.357 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.139 4.139 3 C -0.043 4.043 4 H 0.057 0.943 5 C -0.117 4.117 6 H 0.083 0.917 7 C -0.198 4.198 8 C -0.158 4.158 9 C -0.086 4.086 10 N -0.203 5.203 11 C -0.047 4.047 12 C 0.014 3.986 13 C -0.495 4.495 14 H 0.095 0.905 15 C -0.126 4.126 16 N -0.540 5.540 17 Si 0.704 3.296 18 H -0.207 1.207 19 H -0.188 1.188 20 H -0.224 1.224 21 C -0.221 4.221 22 C -0.247 4.247 23 H 0.103 0.897 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.021 0.979 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.253 0.535 -8.878 12.834 hybrid contribution -0.773 1.048 -1.388 1.903 sum 8.480 1.583 -10.265 13.409 Atomic orbital electron populations 1.21944 0.96063 1.00331 1.03327 1.21548 0.95986 0.95304 1.01038 1.22465 0.93237 0.96053 0.92532 0.94305 1.21978 0.95149 0.96660 0.97940 0.91700 1.21912 0.99691 0.95994 1.02241 1.22591 0.97218 0.98621 0.97388 1.23198 0.90106 0.93589 1.01662 1.64550 1.02064 1.25314 1.28417 1.22209 0.91840 0.95081 0.95532 1.19388 0.97833 0.86493 0.94899 1.20127 0.97424 1.23431 1.08543 0.90451 1.24902 0.98088 0.94434 0.95149 1.69903 1.19904 1.28084 1.36089 0.86962 0.81538 0.77919 0.83202 1.20729 1.18805 1.22410 1.22863 0.93966 1.05257 1.00028 1.23042 0.95345 1.06071 1.00202 0.89693 0.94176 0.93798 0.92949 0.90872 0.91547 0.92792 0.93477 0.92089 0.90722 0.95117 0.89537 0.90204 0.97912 0.92890 0.89706 0.91362 0.91423 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.40 37.16 0.31 -2.52 16 2 C -0.10 -1.59 4.48 -26.73 -0.12 -1.71 16 3 C 0.07 1.07 2.67 -66.64 -0.18 0.89 16 4 H 0.04 0.64 7.77 -51.93 -0.40 0.23 16 5 C -0.10 -1.33 3.58 -89.27 -0.32 -1.65 16 6 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 7 C -0.14 -1.68 7.92 37.16 0.29 -1.38 16 8 C -0.12 -1.68 6.60 -24.87 -0.16 -1.85 16 9 C 0.04 0.72 4.92 -1.90 -0.01 0.71 16 10 N -0.48 -9.23 4.58 -222.58 -1.02 -10.25 16 11 C 0.08 1.72 3.87 -3.83 -0.01 1.70 16 12 C 0.02 0.35 0.71 -155.66 -0.11 0.24 16 13 C -0.46 -12.63 9.32 -34.44 -0.32 -12.95 16 14 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 15 C 0.08 2.14 5.47 -17.81 -0.10 2.05 16 16 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 17 Si 0.87 21.93 24.72 -169.99 -4.20 17.73 16 18 H -0.28 -6.97 7.07 56.52 0.40 -6.57 16 19 H -0.26 -6.27 6.05 56.52 0.34 -5.93 16 20 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 21 C -0.18 -3.76 8.36 -26.69 -0.22 -3.98 16 22 C -0.21 -4.53 7.55 -26.69 -0.20 -4.73 16 23 H 0.08 1.85 6.67 -51.93 -0.35 1.50 16 24 H 0.04 0.68 7.76 -51.93 -0.40 0.27 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.70 6.95 -51.93 -0.36 0.34 16 27 H 0.07 1.21 6.57 -51.93 -0.34 0.87 16 28 H 0.07 0.86 6.59 -51.93 -0.34 0.52 16 29 H 0.05 0.59 6.94 -51.93 -0.36 0.23 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 33 H 0.03 0.51 7.32 -51.93 -0.38 0.13 16 34 H 0.09 1.59 7.31 -51.93 -0.38 1.21 16 35 H 0.08 1.79 3.94 -51.93 -0.20 1.58 16 36 H 0.00 0.06 7.94 -51.93 -0.41 -0.36 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 39 H 0.07 1.25 7.05 -51.93 -0.37 0.88 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.09 1.99 7.07 -51.93 -0.37 1.62 16 LS Contribution 300.32 15.07 4.53 4.53 Total: -1.00 -29.00 300.32 -8.31 -37.30 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.23 Total: 2.55 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -1.15 Total: -25.19 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.24 Total: -36.92 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.20 Total: 17.73 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.00 -8.31 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384285906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.089 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds