Wall clock time and date at job start Sun Mar 29 2020 22:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47218 * 2 1 4 4 H 1.09005 * 110.06117 * 299.87046 * 3 2 1 5 5 C 1.53993 * 109.91834 * 178.66516 * 3 2 1 6 6 H 1.09001 * 110.30613 * 120.50782 * 5 3 2 7 7 C 1.53002 * 110.39205 * 358.38035 * 5 3 2 8 8 C 1.54589 * 105.13921 * 239.42362 * 5 3 2 9 9 C 1.54937 * 102.92455 * 338.04254 * 8 5 3 10 10 N 1.47895 * 109.91550 * 61.07400 * 3 2 1 11 11 C 1.46903 * 111.00432 * 265.20093 * 10 3 2 12 12 C 1.52990 * 109.47564 * 176.77153 * 11 10 3 13 13 C 1.50701 * 115.54960 * 295.31542 * 12 11 10 14 14 H 1.08001 * 120.00363 * 95.03451 * 13 12 11 15 15 C 1.37886 * 119.99727 * 275.03506 * 13 12 11 16 16 N 1.31518 * 119.99656 * 174.99212 * 15 13 12 17 17 Si 1.86797 * 119.99938 * 354.99574 * 15 13 12 18 18 H 1.48500 * 109.47122 * 274.98052 * 17 15 13 19 19 H 1.48501 * 109.46965 * 34.98220 * 17 15 13 20 20 H 1.48502 * 109.47134 * 154.98170 * 17 15 13 21 21 C 1.53005 * 117.50189 * 80.98099 * 12 11 10 22 22 C 1.53004 * 117.50281 * 149.64396 * 12 11 10 23 23 H 1.08993 * 109.46970 * 291.84267 * 1 2 3 24 24 H 1.09002 * 109.47080 * 51.84304 * 1 2 3 25 25 H 1.09006 * 109.46944 * 171.83931 * 1 2 3 26 26 H 1.09005 * 109.47354 * 240.00116 * 2 1 3 27 27 H 1.08998 * 109.47543 * 119.99836 * 2 1 3 28 28 H 1.08997 * 109.47375 * 302.78285 * 7 5 3 29 29 H 1.09002 * 109.46770 * 62.77978 * 7 5 3 30 30 H 1.09003 * 109.46992 * 182.77550 * 7 5 3 31 31 H 1.09003 * 110.72402 * 219.68567 * 8 5 3 32 32 H 1.09000 * 110.87867 * 96.47177 * 8 5 3 33 33 H 1.09000 * 110.66684 * 278.98197 * 9 8 5 34 34 H 1.08997 * 110.67086 * 155.84727 * 9 8 5 35 35 H 1.08997 * 109.47194 * 56.76306 * 11 10 3 36 36 H 1.09000 * 109.46521 * 296.76823 * 11 10 3 37 37 H 0.96997 * 119.99297 * 180.02562 * 16 15 13 38 38 H 1.09002 * 117.50190 * 215.00394 * 21 12 11 39 39 H 1.08994 * 117.49400 * 0.02687 * 21 12 11 40 40 H 1.08994 * 117.49633 * 359.97438 * 22 12 11 41 41 H 1.09000 * 117.50058 * 144.97122 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6839 1.9651 -0.8879 5 6 3.5796 1.4547 0.0337 6 1 3.9731 1.9697 -0.8426 7 6 4.1227 0.0257 0.0973 8 6 3.9491 2.2268 1.3209 9 6 2.6746 3.0617 1.6022 10 7 1.5739 2.1417 1.2170 11 6 0.3340 2.8848 0.9551 12 6 -0.1596 3.5270 2.2530 13 6 -0.5721 2.5658 3.3379 14 1 0.1323 2.2846 4.1068 15 6 -1.8489 2.0454 3.3489 16 7 -2.1793 1.1325 4.2362 17 14 -3.1093 2.6368 2.1035 18 1 -3.7619 3.8716 2.6079 19 1 -2.4327 2.9259 0.8136 20 1 -4.1353 1.5828 1.8989 21 6 0.4951 4.8408 2.6847 22 6 -0.9357 4.8408 2.1406 23 1 -0.3633 0.3823 0.9538 24 1 -0.3633 0.6349 -0.8081 25 1 -0.3633 -1.0173 -0.1459 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7125 -0.4804 0.9712 29 1 3.8326 -0.5137 -0.8044 30 1 5.2099 0.0532 0.1702 31 1 4.8061 2.8778 1.1476 32 1 4.1489 1.5391 2.1427 33 1 2.6590 3.9599 0.9849 34 1 2.6087 3.3190 2.6593 35 1 -0.4258 2.2015 0.5759 36 1 0.5257 3.6619 0.2152 37 1 -3.0773 0.7661 4.2436 38 1 0.6274 5.0099 3.7534 39 1 1.2772 5.2477 2.0438 40 1 -1.0943 5.2477 1.1420 41 1 -1.7450 5.0097 2.8510 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384285906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:45 Heat of formation + Delta-G solvation = 6.893285 kcal Electronic energy + Delta-G solvation = -18414.719025 eV Core-core repulsion = 15908.367166 eV Total energy + Delta-G solvation = -2506.351859 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72024 -38.37165 -34.30328 -33.98838 -33.77077 -29.66448 -28.21854 -27.18322 -25.45769 -23.76505 -23.21152 -21.79337 -20.79560 -19.73811 -18.26526 -16.98375 -16.82013 -16.12129 -15.75411 -15.38849 -14.83760 -14.68262 -14.62842 -14.22055 -14.06113 -13.48861 -13.43313 -13.07928 -12.89883 -12.66913 -12.54068 -12.31246 -12.14052 -11.93628 -11.84009 -11.63859 -11.49932 -11.22796 -11.19418 -11.14425 -10.90383 -10.43710 -10.19137 -8.98385 -8.19097 -6.20035 1.35038 1.37310 1.48400 2.41572 3.00612 3.16847 3.45715 3.76222 3.84388 4.01011 4.21718 4.28718 4.36361 4.40273 4.45299 4.49246 4.55102 4.58841 4.69140 4.76434 4.83630 4.86061 4.86843 4.94727 5.03681 5.07824 5.10697 5.17153 5.25624 5.27438 5.38982 5.40724 5.43707 5.54432 5.60487 5.65168 5.79221 6.30772 6.41861 6.52372 6.85023 7.45043 8.97630 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025834 B = 0.009700 C = 0.008283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.602286 B = 2886.050623 C = 3379.755955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 C 0.062 3.938 4 H 0.043 0.957 5 C -0.092 4.092 6 H 0.087 0.913 7 C -0.138 4.138 8 C -0.114 4.114 9 C 0.041 3.959 10 N -0.510 5.510 11 C 0.091 3.909 12 C -0.010 4.010 13 C -0.449 4.449 14 H 0.026 0.974 15 C 0.020 3.980 16 N -0.953 5.953 17 Si 0.933 3.067 18 H -0.273 1.273 19 H -0.240 1.240 20 H -0.302 1.302 21 C -0.163 4.163 22 C -0.205 4.205 23 H 0.036 0.964 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.021 0.979 37 H 0.260 0.740 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.972 2.229 -12.375 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.135 4.135 3 C -0.046 4.046 4 H 0.061 0.939 5 C -0.111 4.111 6 H 0.105 0.895 7 C -0.195 4.195 8 C -0.152 4.152 9 C -0.087 4.087 10 N -0.234 5.234 11 C -0.037 4.037 12 C -0.011 4.011 13 C -0.487 4.487 14 H 0.045 0.955 15 C -0.175 4.175 16 N -0.594 5.594 17 Si 0.759 3.241 18 H -0.199 1.199 19 H -0.163 1.163 20 H -0.230 1.230 21 C -0.200 4.200 22 C -0.243 4.243 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.713 1.750 -11.906 16.111 hybrid contribution -1.139 0.649 -0.354 1.358 sum 9.574 2.398 -12.259 15.738 Atomic orbital electron populations 1.21868 0.97723 1.00812 1.00845 1.21557 0.94381 0.95699 1.01816 1.22573 0.95290 0.95492 0.91272 0.93854 1.21988 0.92976 0.97789 0.98303 0.89458 1.21874 1.00712 0.94874 1.02047 1.22566 0.96650 0.98494 0.97461 1.23178 0.90901 0.94288 1.00333 1.64463 1.02265 1.26071 1.30552 1.21953 0.92453 0.95066 0.94231 1.19295 1.00319 0.86559 0.94951 1.20204 0.96246 1.23743 1.08462 0.95525 1.25653 1.00228 0.94580 0.97087 1.70059 1.20385 1.30271 1.38701 0.86011 0.78902 0.77338 0.81868 1.19871 1.16323 1.22967 1.22850 0.94319 1.02715 1.00108 1.23077 0.95428 1.04419 1.01377 0.94445 0.93377 0.92713 0.89758 0.92348 0.93350 0.91492 0.91690 0.89330 0.91832 0.93924 0.92019 0.91935 0.96116 0.93082 0.90722 0.88306 0.88635 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.43 8.40 71.98 0.60 -4.83 16 2 C -0.10 -2.91 4.48 30.60 0.14 -2.77 16 3 C 0.06 1.87 2.67 45.06 0.12 1.99 16 4 H 0.04 1.28 7.77 -2.38 -0.02 1.26 16 5 C -0.09 -2.16 3.58 -9.92 -0.04 -2.20 16 6 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.14 -2.84 7.92 71.98 0.57 -2.27 16 8 C -0.11 -2.90 6.60 31.80 0.21 -2.69 16 9 C 0.04 1.31 4.92 86.65 0.43 1.74 16 10 N -0.51 -19.16 4.58 -858.10 -3.93 -23.09 16 11 C 0.09 3.73 3.87 86.30 0.33 4.06 16 12 C -0.01 -0.46 0.71 -52.93 -0.04 -0.50 16 13 C -0.45 -25.74 9.32 25.60 0.24 -25.51 16 14 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 15 C 0.02 1.21 5.47 84.66 0.46 1.67 16 16 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 17 Si 0.93 45.76 24.72 68.60 1.70 47.45 16 18 H -0.27 -12.95 7.07 99.48 0.70 -12.24 16 19 H -0.24 -10.76 6.05 99.48 0.60 -10.16 16 20 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 21 C -0.16 -6.40 8.36 30.62 0.26 -6.14 16 22 C -0.21 -8.46 7.55 30.62 0.23 -8.23 16 23 H 0.04 1.66 6.67 -2.39 -0.02 1.64 16 24 H 0.05 1.56 7.76 -2.39 -0.02 1.54 16 25 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.08 2.00 6.95 -2.38 -0.02 1.98 16 27 H 0.06 1.92 6.57 -2.39 -0.02 1.91 16 28 H 0.05 1.17 6.59 -2.39 -0.02 1.16 16 29 H 0.07 1.21 6.94 -2.39 -0.02 1.19 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.75 7.87 -2.39 -0.02 1.73 16 33 H 0.04 1.27 7.32 -2.39 -0.02 1.25 16 34 H 0.06 2.26 7.31 -2.39 -0.02 2.25 16 35 H 0.06 2.75 3.94 -2.39 -0.01 2.74 16 36 H 0.02 0.77 7.94 -2.39 -0.02 0.75 16 37 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.10 3.29 7.05 -2.39 -0.02 3.27 16 40 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.07 3.19 7.07 -2.39 -0.02 3.17 16 Total: -1.00 -65.73 300.32 2.45 -63.27 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.87 Total: 18.62 kcal Atomic # 6 Polarization: -49.19 SS G_CDS: 3.52 Total: -45.68 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.63 Total: -83.67 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.70 Total: 47.45 kcal Total: -65.73 2.45 -63.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384285906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.165 kcal (2) G-P(sol) polarization free energy of solvation -65.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds