Wall clock time and date at job start Sun Mar 29 2020 21:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47505 * 2 1 4 4 C 1.36878 * 126.39829 * 265.02999 * 3 2 1 5 5 C 1.34666 * 106.81597 * 180.23772 * 4 3 2 6 6 N 1.34129 * 108.02165 * 359.60606 * 5 4 3 7 7 C 1.30498 * 109.25671 * 0.40230 * 6 5 4 8 8 C 1.50696 * 125.65039 * 179.73373 * 7 6 5 9 9 N 1.46904 * 109.47078 * 270.02096 * 8 7 6 10 10 C 1.46903 * 110.99805 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46714 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47061 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47238 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00285 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99982 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00156 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00027 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47088 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46956 * 119.99846 * 17 15 13 20 20 H 1.48494 * 109.47253 * 240.00038 * 17 15 13 21 21 H 1.09001 * 109.46832 * 59.99749 * 1 2 3 22 22 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47324 * 300.00335 * 1 2 3 24 24 H 1.09000 * 109.47534 * 240.00174 * 2 1 3 25 25 H 1.09008 * 109.47437 * 119.99631 * 2 1 3 26 26 H 1.08002 * 126.58785 * 359.96564 * 4 3 2 27 27 H 1.08003 * 125.98708 * 179.75770 * 5 4 3 28 28 H 1.09001 * 109.47579 * 30.02373 * 8 7 6 29 29 H 1.09000 * 109.47253 * 150.02525 * 8 7 6 30 30 H 1.00898 * 110.99563 * 56.04630 * 9 8 7 31 31 H 1.08996 * 109.47333 * 300.00302 * 10 9 8 32 32 H 1.08999 * 109.46805 * 60.00614 * 10 9 8 33 33 H 1.09008 * 109.46832 * 299.99734 * 11 10 9 34 34 H 1.08997 * 109.47226 * 59.99969 * 11 10 9 35 35 H 1.08996 * 109.46913 * 299.99823 * 12 11 10 36 36 H 1.09003 * 109.46777 * 59.99437 * 12 11 10 37 37 H 0.97003 * 120.00112 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3792 2.1152 -1.0976 5 6 2.7703 3.3226 -0.6475 6 7 2.6434 3.3288 0.6878 7 6 2.1965 2.1681 1.0830 8 6 1.9249 1.7715 2.5112 9 7 3.1376 1.1830 3.0951 10 6 2.9098 0.7841 4.4905 11 6 4.1924 0.1776 5.0633 12 6 3.9551 -0.2385 6.5164 13 6 5.2181 -0.8365 7.0804 14 1 6.1017 -0.9126 6.4640 15 6 5.2458 -1.2865 8.3833 16 7 4.1700 -1.1934 9.1342 17 14 6.8112 -2.0283 9.0823 18 1 7.8712 -2.0178 8.0423 19 1 7.2580 -1.2298 10.2519 20 1 6.5490 -3.4265 9.5084 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 2.3586 1.7873 -2.1264 27 1 3.1220 4.1431 -1.2554 28 1 1.6363 2.6526 3.0844 29 1 1.1171 1.0402 2.5378 30 1 3.9182 1.8184 3.0238 31 1 2.6283 1.6586 5.0771 32 1 2.1088 0.0460 4.5312 33 1 4.4743 -0.6969 4.4767 34 1 4.9932 0.9159 5.0226 35 1 3.6730 0.6356 7.1031 36 1 3.1543 -0.9770 6.5566 37 1 4.1894 -1.5103 10.0508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389892267.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:06 Heat of formation + Delta-G solvation = 41.685236 kcal Electronic energy + Delta-G solvation = -16166.691903 eV Core-core repulsion = 13558.308393 eV Total energy + Delta-G solvation = -2608.383510 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.13396 -36.47115 -35.09137 -33.60117 -31.65478 -30.29865 -29.50078 -26.71460 -24.69445 -23.76763 -22.20811 -21.38747 -20.34993 -19.49949 -17.24331 -16.30126 -15.71489 -15.56648 -14.84970 -14.53742 -14.27075 -14.04328 -13.93587 -13.62367 -13.16145 -12.76462 -12.42627 -12.32210 -11.88838 -11.66501 -11.56615 -11.40995 -10.85220 -10.58026 -10.48252 -9.98653 -9.69754 -9.67344 -9.36344 -9.04553 -8.50907 -8.33207 -8.20960 -5.98260 -4.00128 1.96679 2.70073 3.09114 3.32639 3.40011 3.44775 4.28404 4.43759 4.48278 4.64031 4.68507 4.75712 4.99284 5.14805 5.23211 5.35692 5.37779 5.46792 5.52872 5.70679 5.73427 5.78018 5.90356 6.26987 6.30505 6.69761 6.71177 6.73482 7.09977 7.13689 7.27020 7.54770 7.70244 7.84668 8.02281 8.09068 8.45679 9.07300 9.63941 11.13232 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042275 B = 0.003724 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.164615 B = 7516.927863 C = 7716.309950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.444 5.444 4 C -0.062 4.062 5 C -0.031 4.031 6 N -0.492 5.492 7 C 0.218 3.782 8 C 0.140 3.860 9 N -0.688 5.688 10 C 0.059 3.941 11 C -0.106 4.106 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.103 0.897 26 H 0.171 0.829 27 H 0.167 0.833 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.346 0.654 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 3.650 -19.987 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.026 4.026 3 N -0.127 5.127 4 C -0.195 4.195 5 C -0.180 4.180 6 N -0.211 5.211 7 C -0.045 4.045 8 C 0.009 3.991 9 N -0.321 5.321 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.188 0.812 27 H 0.184 0.816 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.164 0.836 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.780 3.484 -19.551 21.328 hybrid contribution 0.620 -0.239 0.199 0.694 sum -7.160 3.245 -19.352 20.888 Atomic orbital electron populations 1.22162 0.94209 1.03267 1.02999 1.21916 0.95399 0.79979 1.05273 1.45423 1.48034 1.12520 1.06712 1.22662 1.09745 0.94379 0.92736 1.22250 1.06890 0.97453 0.91359 1.70248 1.18732 1.20031 1.12136 1.23155 1.03337 0.87016 0.90944 1.20207 0.94394 0.98744 0.85740 1.60634 1.05438 1.45919 1.20083 1.22163 1.00496 0.98863 0.85380 1.21624 0.94284 0.99451 0.99097 1.19074 0.97090 0.96388 0.89051 1.21296 0.97755 1.39604 0.96973 0.92617 1.25029 0.96235 0.96093 0.97186 1.69977 1.27961 1.47556 1.08132 0.86542 0.83636 0.78843 0.79026 1.19724 1.21040 1.21035 0.92108 0.90382 0.91746 0.89156 0.87860 0.81193 0.81569 0.92164 0.89799 0.83569 0.95268 0.91362 0.92616 0.93501 0.96693 0.96568 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.15 0.38 -0.78 16 2 C 0.10 0.80 6.40 -4.04 -0.03 0.78 16 3 N -0.44 -5.00 2.75 -113.90 -0.31 -5.31 16 4 C -0.06 -0.65 11.58 -16.56 -0.19 -0.84 16 5 C -0.03 -0.38 11.87 -17.81 -0.21 -0.59 16 6 N -0.49 -7.42 11.25 -10.82 -0.12 -7.54 16 7 C 0.22 2.98 7.41 -155.42 -1.15 1.82 16 8 C 0.14 1.83 5.84 -4.98 -0.03 1.81 16 9 N -0.69 -10.33 6.49 -115.05 -0.75 -11.07 16 10 C 0.06 1.01 5.69 -3.82 -0.02 0.99 16 11 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.10 0.95 7.91 -51.92 -0.41 0.54 16 26 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 27 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.97 7.36 -51.93 -0.38 0.58 16 30 H 0.35 5.40 8.72 -39.29 -0.34 5.05 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 313.86 15.07 4.73 4.73 Total: -1.00 -32.44 313.86 -8.83 -41.27 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.15 Total: -0.09 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.95 Total: -12.42 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.45 Total: -50.33 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.44 -8.83 -41.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389892267.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.955 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds