Wall clock time and date at job start Sun Mar 29 2020 21:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46507 * 109.47505 * 2 1 4 4 C 1.36878 * 126.39829 * 265.02999 * 3 2 1 5 5 C 1.34666 * 106.81597 * 180.23772 * 4 3 2 6 6 N 1.34129 * 108.02165 * 359.60606 * 5 4 3 7 7 C 1.30498 * 109.25671 * 0.40230 * 6 5 4 8 8 C 1.50696 * 125.65039 * 179.73373 * 7 6 5 9 9 N 1.46904 * 109.47078 * 270.02096 * 8 7 6 10 10 C 1.46903 * 110.99805 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46714 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47061 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47238 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00285 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99982 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00156 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00027 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47088 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46956 * 119.99846 * 17 15 13 20 20 H 1.48494 * 109.47253 * 240.00038 * 17 15 13 21 21 H 1.09001 * 109.46832 * 59.99749 * 1 2 3 22 22 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47324 * 300.00335 * 1 2 3 24 24 H 1.09000 * 109.47534 * 240.00174 * 2 1 3 25 25 H 1.09008 * 109.47437 * 119.99631 * 2 1 3 26 26 H 1.08002 * 126.58785 * 359.96564 * 4 3 2 27 27 H 1.08003 * 125.98708 * 179.75770 * 5 4 3 28 28 H 1.09001 * 109.47579 * 30.02373 * 8 7 6 29 29 H 1.09000 * 109.47253 * 150.02525 * 8 7 6 30 30 H 1.00898 * 110.99563 * 56.04630 * 9 8 7 31 31 H 1.08996 * 109.47333 * 300.00302 * 10 9 8 32 32 H 1.08999 * 109.46805 * 60.00614 * 10 9 8 33 33 H 1.09008 * 109.46832 * 299.99734 * 11 10 9 34 34 H 1.08997 * 109.47226 * 59.99969 * 11 10 9 35 35 H 1.08996 * 109.46913 * 299.99823 * 12 11 10 36 36 H 1.09003 * 109.46777 * 59.99437 * 12 11 10 37 37 H 0.97003 * 120.00112 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3792 2.1152 -1.0976 5 6 2.7703 3.3226 -0.6475 6 7 2.6434 3.3288 0.6878 7 6 2.1965 2.1681 1.0830 8 6 1.9249 1.7715 2.5112 9 7 3.1376 1.1830 3.0951 10 6 2.9098 0.7841 4.4905 11 6 4.1924 0.1776 5.0633 12 6 3.9551 -0.2385 6.5164 13 6 5.2181 -0.8365 7.0804 14 1 6.1017 -0.9126 6.4640 15 6 5.2458 -1.2865 8.3833 16 7 4.1700 -1.1934 9.1342 17 14 6.8112 -2.0283 9.0823 18 1 7.8712 -2.0178 8.0423 19 1 7.2580 -1.2298 10.2519 20 1 6.5490 -3.4265 9.5084 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8901 26 1 2.3586 1.7873 -2.1264 27 1 3.1220 4.1431 -1.2554 28 1 1.6363 2.6526 3.0844 29 1 1.1171 1.0402 2.5378 30 1 3.9182 1.8184 3.0238 31 1 2.6283 1.6586 5.0771 32 1 2.1088 0.0460 4.5312 33 1 4.4743 -0.6969 4.4767 34 1 4.9932 0.9159 5.0226 35 1 3.6730 0.6356 7.1031 36 1 3.1543 -0.9770 6.5566 37 1 4.1894 -1.5103 10.0508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389892267.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:06 Heat of formation + Delta-G solvation = 21.001807 kcal Electronic energy + Delta-G solvation = -16167.588803 eV Core-core repulsion = 13558.308393 eV Total energy + Delta-G solvation = -2609.280411 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.01861 -37.83664 -35.86005 -35.51947 -33.41564 -31.16082 -30.65500 -28.29879 -26.11907 -24.55069 -23.82265 -22.24870 -22.02848 -20.51451 -18.50306 -18.06446 -16.86875 -16.66396 -16.42329 -15.76720 -15.41686 -15.25157 -15.01316 -14.43767 -14.38491 -14.27692 -13.55393 -13.44173 -13.17970 -13.14879 -12.85713 -12.67495 -12.45348 -12.24957 -12.19564 -11.54413 -11.39886 -11.12293 -10.92560 -10.56106 -10.54872 -9.58485 -9.27376 -8.19654 -6.30287 1.08544 1.40574 1.40925 1.54461 1.91664 2.14030 2.41817 3.13639 3.20903 3.60690 3.80878 3.87993 4.10919 4.22047 4.28082 4.39538 4.43509 4.46797 4.56067 4.72720 4.77467 4.85388 4.87230 4.97682 5.08239 5.19809 5.24262 5.42783 5.52594 5.75820 5.85603 5.87224 5.92521 6.24451 6.26752 6.31134 6.86705 7.17510 7.38926 8.92392 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042275 B = 0.003724 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.164615 B = 7516.927863 C = 7716.309950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.443 5.443 4 C -0.045 4.045 5 C -0.060 4.060 6 N -0.530 5.530 7 C 0.195 3.805 8 C 0.146 3.854 9 N -0.684 5.684 10 C 0.073 3.927 11 C -0.092 4.092 12 C 0.025 3.975 13 C -0.543 4.543 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.276 1.276 21 H 0.063 0.937 22 H 0.096 0.904 23 H 0.050 0.950 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.209 0.791 27 H 0.184 0.816 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.343 0.657 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.045 0.955 35 H -0.009 1.009 36 H -0.004 1.004 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 2.801 -21.613 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.125 5.125 4 C -0.179 4.179 5 C -0.208 4.208 6 N -0.250 5.250 7 C -0.068 4.068 8 C 0.015 3.985 9 N -0.316 5.316 10 C -0.056 4.056 11 C -0.130 4.130 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.789 3.211 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.202 1.202 21 H 0.083 0.917 22 H 0.114 0.886 23 H 0.070 0.930 24 H 0.133 0.867 25 H 0.111 0.889 26 H 0.226 0.774 27 H 0.201 0.799 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.160 0.840 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.010 0.990 36 H 0.015 0.985 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.431 2.626 -21.191 22.609 hybrid contribution 0.473 0.039 0.638 0.795 sum -6.958 2.665 -20.554 21.862 Atomic orbital electron populations 1.22123 0.93086 1.04307 1.02508 1.22145 0.96285 0.78503 1.05991 1.45645 1.47224 1.13324 1.06284 1.23265 1.07228 0.93473 0.93978 1.22709 1.08129 0.99172 0.90752 1.70169 1.19680 1.21236 1.13909 1.23040 1.04838 0.87474 0.91443 1.20167 0.93698 0.98814 0.85799 1.60569 1.06283 1.46266 1.18440 1.21877 0.98478 0.98704 0.86494 1.21367 0.96181 0.99509 0.95947 1.18976 0.95630 0.94708 0.91968 1.21728 0.98698 1.40024 0.97636 0.92414 1.25969 0.99842 0.96427 0.97587 1.70097 1.30240 1.48378 1.08623 0.85404 0.79294 0.78069 0.78312 1.18745 1.20391 1.20193 0.91745 0.88570 0.93049 0.86704 0.88905 0.77417 0.79889 0.92718 0.88247 0.83983 0.95534 0.90749 0.92713 0.93598 0.99026 0.98530 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.24 71.98 0.74 -1.13 16 2 C 0.09 1.31 6.40 86.38 0.55 1.86 16 3 N -0.44 -9.13 2.75 -514.28 -1.42 -10.55 16 4 C -0.05 -0.84 11.58 83.09 0.96 0.13 16 5 C -0.06 -1.40 11.87 83.52 0.99 -0.41 16 6 N -0.53 -15.81 11.25 -188.13 -2.12 -17.92 16 7 C 0.19 5.17 7.41 138.13 1.02 6.19 16 8 C 0.15 3.75 5.84 85.55 0.50 4.25 16 9 N -0.68 -20.19 6.49 -517.92 -3.36 -23.55 16 10 C 0.07 2.48 5.69 86.30 0.49 2.97 16 11 C -0.09 -3.84 5.41 30.60 0.17 -3.68 16 12 C 0.02 1.32 4.97 29.85 0.15 1.47 16 13 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 16 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 17 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.05 0.73 7.68 -2.39 -0.02 0.71 16 24 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 1.55 7.91 -2.38 -0.02 1.53 16 26 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 27 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.10 2.20 7.36 -2.39 -0.02 2.18 16 30 H 0.34 10.62 8.72 -89.70 -0.78 9.83 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -69.95 313.86 1.93 -68.02 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.25 Total: 13.20 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 6.27 Total: -19.11 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -6.61 Total: -108.85 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.95 1.93 -68.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389892267.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.019 kcal (2) G-P(sol) polarization free energy of solvation -69.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds