Wall clock time and date at job start Sun Mar 29 2020 22:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46820 * 2 1 4 4 H 1.08995 * 110.05825 * 53.00057 * 3 2 1 5 5 C 1.54259 * 110.03170 * 291.58054 * 3 2 1 6 6 C 1.54892 * 104.19546 * 217.10794 * 5 3 2 7 7 C 1.54964 * 102.77813 * 37.91963 * 6 5 3 8 8 C 1.53880 * 110.02801 * 174.41760 * 3 2 1 9 9 H 1.09003 * 110.03072 * 238.61922 * 8 3 2 10 10 N 1.46900 * 110.03241 * 359.97438 * 8 3 2 11 11 C 1.46900 * 110.99822 * 208.25737 * 10 8 3 12 12 C 1.52998 * 109.47360 * 184.82073 * 11 10 8 13 13 C 1.50707 * 115.54994 * 304.77701 * 12 11 10 14 14 H 1.08001 * 119.99774 * 99.01182 * 13 12 11 15 15 C 1.37877 * 120.00072 * 279.01792 * 13 12 11 16 16 N 1.31518 * 119.99757 * 355.38171 * 15 13 12 17 17 Si 1.86798 * 120.00132 * 175.39467 * 15 13 12 18 18 H 1.48498 * 109.47328 * 89.99530 * 17 15 13 19 19 H 1.48507 * 109.46850 * 329.99141 * 17 15 13 20 20 H 1.48498 * 109.46962 * 209.99688 * 17 15 13 21 21 C 1.52993 * 117.51806 * 90.47373 * 12 11 10 22 22 C 1.52997 * 117.50342 * 159.10752 * 12 11 10 23 23 H 1.09000 * 109.47563 * 59.99986 * 1 2 3 24 24 H 1.08998 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47237 * 300.00014 * 1 2 3 26 26 H 1.08998 * 109.47237 * 239.99986 * 2 1 3 27 27 H 1.09001 * 109.46820 * 119.99996 * 2 1 3 28 28 H 1.09000 * 110.48738 * 335.78377 * 5 3 2 29 29 H 1.09002 * 110.48418 * 98.42952 * 5 3 2 30 30 H 1.09000 * 110.75304 * 156.25842 * 6 5 3 31 31 H 1.08999 * 110.75851 * 279.62943 * 6 5 3 32 32 H 1.09003 * 110.52713 * 203.43561 * 7 6 5 33 33 H 1.09003 * 110.47750 * 80.76250 * 7 6 5 34 34 H 1.00898 * 111.00147 * 84.30942 * 10 8 3 35 35 H 1.09004 * 109.46926 * 64.82087 * 11 10 8 36 36 H 1.09000 * 109.47610 * 304.82556 * 11 10 8 37 37 H 0.96997 * 119.99743 * 5.24695 * 16 15 13 38 38 H 1.09006 * 117.50215 * 214.97380 * 21 12 11 39 39 H 1.08999 * 117.50327 * 359.97438 * 21 12 11 40 40 H 1.09001 * 117.49428 * 359.97228 * 22 12 11 41 41 H 1.08991 * 117.50215 * 144.99863 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5836 2.0003 0.8177 5 6 1.7135 2.1184 -1.3477 6 6 2.9446 3.0145 -1.6313 7 6 4.1243 2.1461 -1.1258 8 6 3.5722 1.4598 0.1406 9 1 3.8594 2.0253 1.0271 10 7 4.0846 0.0862 0.2332 11 6 5.3353 0.0417 1.0024 12 6 5.9002 -1.3800 0.9756 13 6 4.9641 -2.4604 1.4526 14 1 4.4182 -3.0568 0.7366 15 6 4.8046 -2.6875 2.8032 16 7 5.5358 -2.0245 3.6723 17 14 3.5502 -3.9372 3.3984 18 1 4.1923 -5.2721 3.5024 19 1 2.4223 -4.0039 2.4347 20 1 3.0388 -3.5287 4.7314 21 6 6.8708 -1.7338 -0.1529 22 6 7.3905 -1.5538 1.2748 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5977 1.3700 -2.1316 29 1 0.8118 2.7248 -1.2617 30 1 3.0403 3.2127 -2.6988 31 1 2.8824 3.9458 -1.0684 32 1 4.9811 2.7726 -0.8775 33 1 4.3983 1.4023 -1.8741 34 1 4.2096 -0.3157 -0.6838 35 1 5.1384 0.3350 2.0335 36 1 6.0580 0.7281 0.5611 37 1 6.1322 -1.3224 3.3687 38 1 6.8323 -2.7481 -0.5504 39 1 7.1068 -0.9539 -0.8769 40 1 7.9687 -0.6553 1.4903 41 1 7.6940 -2.4495 1.8166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389907009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:28 Heat of formation + Delta-G solvation = -1.295778 kcal Electronic energy + Delta-G solvation = -17850.207584 eV Core-core repulsion = 15343.500621 eV Total energy + Delta-G solvation = -2506.706963 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.90846 -36.89114 -33.24285 -32.57031 -31.70267 -27.41331 -27.30750 -24.84336 -23.67402 -22.23715 -21.22149 -20.60186 -19.28681 -18.56683 -16.65054 -15.61600 -15.10644 -14.37759 -14.07061 -13.64492 -13.56042 -13.22963 -13.00600 -12.88769 -12.54669 -12.19759 -11.79453 -11.40450 -11.20764 -10.95409 -10.84907 -10.74391 -10.69035 -10.59205 -10.39545 -10.21877 -10.02788 -9.99478 -9.87559 -9.34649 -8.53736 -8.38098 -8.06915 -7.42536 -6.17936 -3.88734 3.50700 3.56265 3.71034 4.61908 4.72288 4.81044 4.87530 5.10490 5.31750 5.44502 5.50173 5.61841 5.67991 5.72482 5.77540 5.81518 5.84267 6.00051 6.01887 6.06407 6.10137 6.17524 6.28284 6.29619 6.38653 6.41193 6.45700 6.50952 6.59425 6.60555 6.78722 6.85754 6.93579 7.16800 7.31224 7.36439 7.98923 8.20221 8.44467 8.58253 9.04117 9.83094 11.21438 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.008664 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.475083 B = 3230.984785 C = 4186.748433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.080 4.080 4 H 0.064 0.936 5 C -0.119 4.119 6 C -0.122 4.122 7 C -0.152 4.152 8 C 0.084 3.916 9 H 0.070 0.930 10 N -0.650 5.650 11 C 0.103 3.897 12 C 0.028 3.972 13 C -0.542 4.542 14 H 0.050 0.950 15 C 0.026 3.974 16 N -0.915 5.915 17 Si 1.067 2.933 18 H -0.293 1.293 19 H -0.288 1.288 20 H -0.287 1.287 21 C -0.202 4.202 22 C -0.183 4.183 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.334 0.666 35 H 0.063 0.937 36 H -0.005 1.005 37 H 0.273 0.727 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 7.919 -8.727 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.136 4.136 3 C -0.099 4.099 4 H 0.083 0.917 5 C -0.157 4.157 6 C -0.160 4.160 7 C -0.191 4.191 8 C -0.027 4.027 9 H 0.088 0.912 10 N -0.279 5.279 11 C -0.026 4.026 12 C 0.027 3.973 13 C -0.580 4.580 14 H 0.068 0.932 15 C -0.178 4.178 16 N -0.551 5.551 17 Si 0.896 3.104 18 H -0.220 1.220 19 H -0.214 1.214 20 H -0.213 1.213 21 C -0.239 4.239 22 C -0.221 4.221 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.153 0.847 35 H 0.082 0.918 36 H 0.013 0.987 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.752 6.992 -6.796 11.860 hybrid contribution 1.401 1.264 -2.051 2.787 sum -5.351 8.256 -8.847 13.231 Atomic orbital electron populations 1.21869 0.97801 1.00869 1.00533 1.21322 0.92839 0.95399 1.04090 1.21787 0.94800 0.97066 0.96259 0.91747 1.22471 0.97074 0.98274 0.97845 1.22427 0.95451 0.98097 1.00055 1.23158 0.97792 0.99388 0.98765 1.22246 0.94456 0.90001 0.96014 0.91215 1.60444 1.30860 1.15705 1.20881 1.21575 0.88187 0.95727 0.97088 1.19189 0.88250 0.93491 0.96384 1.21089 1.25961 1.17300 0.93678 0.93171 1.25619 0.98660 1.00415 0.93146 1.70699 1.24310 1.22759 1.37354 0.83580 0.75846 0.75244 0.75681 1.21980 1.21373 1.21323 1.22858 1.09486 1.00343 0.91213 1.22765 1.00482 1.01056 0.97808 0.93799 0.93285 0.93499 0.92475 0.89407 0.91734 0.92365 0.92271 0.91921 0.92415 0.91734 0.84730 0.91817 0.98716 0.91623 0.90350 0.92038 0.91938 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.77 37.16 0.36 -1.71 16 2 C -0.10 -1.56 4.30 -26.73 -0.11 -1.68 16 3 C -0.08 -1.16 2.92 -89.50 -0.26 -1.42 16 4 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 5 C -0.12 -1.45 5.56 -25.07 -0.14 -1.59 16 6 C -0.12 -1.43 6.91 -24.70 -0.17 -1.60 16 7 C -0.15 -2.08 6.50 -25.03 -0.16 -2.25 16 8 C 0.08 1.35 3.23 -66.59 -0.21 1.13 16 9 H 0.07 1.19 7.82 -51.93 -0.41 0.78 16 10 N -0.65 -12.46 4.03 -105.54 -0.42 -12.88 16 11 C 0.10 2.25 5.37 -3.82 -0.02 2.23 16 12 C 0.03 0.67 1.11 -155.66 -0.17 0.49 16 13 C -0.54 -14.77 8.51 -34.44 -0.29 -15.06 16 14 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16 15 C 0.03 0.73 5.44 -17.82 -0.10 0.63 16 16 N -0.92 -27.15 13.54 55.43 0.75 -26.40 16 17 Si 1.07 25.52 29.91 -169.99 -5.08 20.44 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 C -0.20 -4.38 9.93 -26.73 -0.27 -4.65 16 22 C -0.18 -4.27 8.58 -26.73 -0.23 -4.50 16 23 H 0.04 0.53 7.53 -51.93 -0.39 0.13 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.92 7.76 -51.93 -0.40 0.52 16 27 H 0.09 1.70 7.55 -51.93 -0.39 1.31 16 28 H 0.06 0.79 7.75 -51.93 -0.40 0.39 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.91 7.51 -51.93 -0.39 0.52 16 34 H 0.33 6.31 7.84 -39.29 -0.31 6.00 16 35 H 0.06 1.55 7.96 -51.93 -0.41 1.14 16 36 H -0.01 -0.11 8.08 -51.93 -0.42 -0.53 16 37 H 0.27 8.01 6.21 -40.82 -0.25 7.76 16 38 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 320.32 15.07 4.83 4.83 Total: -1.00 -28.08 320.32 -9.35 -37.42 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.64 Total: 6.56 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: -1.78 Total: -29.96 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.33 Total: -39.29 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.08 -9.35 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389907009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.126 kcal (2) G-P(sol) polarization free energy of solvation -28.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds