Wall clock time and date at job start Sun Mar 29 2020 22:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46820 * 2 1 4 4 H 1.08995 * 110.05825 * 53.00057 * 3 2 1 5 5 C 1.54259 * 110.03170 * 291.58054 * 3 2 1 6 6 C 1.54892 * 104.19546 * 217.10794 * 5 3 2 7 7 C 1.54964 * 102.77813 * 37.91963 * 6 5 3 8 8 C 1.53880 * 110.02801 * 174.41760 * 3 2 1 9 9 H 1.09003 * 110.03072 * 238.61922 * 8 3 2 10 10 N 1.46900 * 110.03241 * 359.97438 * 8 3 2 11 11 C 1.46900 * 110.99822 * 208.25737 * 10 8 3 12 12 C 1.52998 * 109.47360 * 184.82073 * 11 10 8 13 13 C 1.50707 * 115.54994 * 304.77701 * 12 11 10 14 14 H 1.08001 * 119.99774 * 99.01182 * 13 12 11 15 15 C 1.37877 * 120.00072 * 279.01792 * 13 12 11 16 16 N 1.31518 * 119.99757 * 355.38171 * 15 13 12 17 17 Si 1.86798 * 120.00132 * 175.39467 * 15 13 12 18 18 H 1.48498 * 109.47328 * 89.99530 * 17 15 13 19 19 H 1.48507 * 109.46850 * 329.99141 * 17 15 13 20 20 H 1.48498 * 109.46962 * 209.99688 * 17 15 13 21 21 C 1.52993 * 117.51806 * 90.47373 * 12 11 10 22 22 C 1.52997 * 117.50342 * 159.10752 * 12 11 10 23 23 H 1.09000 * 109.47563 * 59.99986 * 1 2 3 24 24 H 1.08998 * 109.47369 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47237 * 300.00014 * 1 2 3 26 26 H 1.08998 * 109.47237 * 239.99986 * 2 1 3 27 27 H 1.09001 * 109.46820 * 119.99996 * 2 1 3 28 28 H 1.09000 * 110.48738 * 335.78377 * 5 3 2 29 29 H 1.09002 * 110.48418 * 98.42952 * 5 3 2 30 30 H 1.09000 * 110.75304 * 156.25842 * 6 5 3 31 31 H 1.08999 * 110.75851 * 279.62943 * 6 5 3 32 32 H 1.09003 * 110.52713 * 203.43561 * 7 6 5 33 33 H 1.09003 * 110.47750 * 80.76250 * 7 6 5 34 34 H 1.00898 * 111.00147 * 84.30942 * 10 8 3 35 35 H 1.09004 * 109.46926 * 64.82087 * 11 10 8 36 36 H 1.09000 * 109.47610 * 304.82556 * 11 10 8 37 37 H 0.96997 * 119.99743 * 5.24695 * 16 15 13 38 38 H 1.09006 * 117.50215 * 214.97380 * 21 12 11 39 39 H 1.08999 * 117.50327 * 359.97438 * 21 12 11 40 40 H 1.09001 * 117.49428 * 359.97228 * 22 12 11 41 41 H 1.08991 * 117.50215 * 144.99863 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5836 2.0003 0.8177 5 6 1.7135 2.1184 -1.3477 6 6 2.9446 3.0145 -1.6313 7 6 4.1243 2.1461 -1.1258 8 6 3.5722 1.4598 0.1406 9 1 3.8594 2.0253 1.0271 10 7 4.0846 0.0862 0.2332 11 6 5.3353 0.0417 1.0024 12 6 5.9002 -1.3800 0.9756 13 6 4.9641 -2.4604 1.4526 14 1 4.4182 -3.0568 0.7366 15 6 4.8046 -2.6875 2.8032 16 7 5.5358 -2.0245 3.6723 17 14 3.5502 -3.9372 3.3984 18 1 4.1923 -5.2721 3.5024 19 1 2.4223 -4.0039 2.4347 20 1 3.0388 -3.5287 4.7314 21 6 6.8708 -1.7338 -0.1529 22 6 7.3905 -1.5538 1.2748 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5977 1.3700 -2.1316 29 1 0.8118 2.7248 -1.2617 30 1 3.0403 3.2127 -2.6988 31 1 2.8824 3.9458 -1.0684 32 1 4.9811 2.7726 -0.8775 33 1 4.3983 1.4023 -1.8741 34 1 4.2096 -0.3157 -0.6838 35 1 5.1384 0.3350 2.0335 36 1 6.0580 0.7281 0.5611 37 1 6.1322 -1.3224 3.3687 38 1 6.8323 -2.7481 -0.5504 39 1 7.1068 -0.9539 -0.8769 40 1 7.9687 -0.6553 1.4903 41 1 7.6940 -2.4495 1.8166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389907009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:27 Heat of formation + Delta-G solvation = -15.242812 kcal Electronic energy + Delta-G solvation = -17850.812373 eV Core-core repulsion = 15343.500621 eV Total energy + Delta-G solvation = -2507.311752 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18850 -38.66231 -34.71724 -33.82309 -33.71661 -28.79042 -28.39057 -26.91128 -25.30322 -23.42690 -23.04091 -21.67558 -21.22947 -19.83845 -18.55394 -16.99531 -16.35425 -15.98756 -15.60229 -15.30372 -15.07609 -14.74468 -14.57220 -14.14713 -14.09520 -13.76743 -13.24676 -12.91702 -12.68218 -12.57987 -12.44135 -12.21321 -12.03866 -11.93112 -11.86406 -11.62182 -11.50494 -11.18164 -11.16381 -11.07125 -10.60170 -10.31428 -10.10455 -8.93252 -8.40378 -6.10472 1.54757 1.64065 1.80423 2.63761 3.16707 3.36535 3.50280 3.71603 3.78640 4.02921 4.21312 4.33555 4.35661 4.46498 4.52523 4.55167 4.58914 4.61385 4.67754 4.75278 4.81902 4.83448 4.89811 4.97823 5.00501 5.07022 5.09332 5.20038 5.24117 5.32553 5.41396 5.45156 5.45973 5.55567 5.64141 5.82309 6.24473 6.36512 6.49175 6.73715 6.85663 7.67048 8.99924 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.008664 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.475083 B = 3230.984785 C = 4186.748433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.078 4.078 4 H 0.063 0.937 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.146 4.146 8 C 0.079 3.921 9 H 0.053 0.947 10 N -0.659 5.659 11 C 0.121 3.879 12 C 0.001 3.999 13 C -0.543 4.543 14 H 0.038 0.962 15 C -0.022 4.022 16 N -0.943 5.943 17 Si 1.106 2.894 18 H -0.281 1.281 19 H -0.275 1.275 20 H -0.290 1.290 21 C -0.175 4.175 22 C -0.188 4.188 23 H 0.065 0.935 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.336 0.664 35 H 0.028 0.972 36 H 0.009 0.991 37 H 0.263 0.737 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 8.938 -10.693 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.098 4.098 4 H 0.082 0.918 5 C -0.148 4.148 6 C -0.152 4.152 7 C -0.185 4.185 8 C -0.032 4.032 9 H 0.071 0.929 10 N -0.289 5.289 11 C -0.009 4.009 12 C 0.000 4.000 13 C -0.581 4.581 14 H 0.056 0.944 15 C -0.221 4.221 16 N -0.581 5.581 17 Si 0.931 3.069 18 H -0.207 1.207 19 H -0.200 1.200 20 H -0.216 1.216 21 C -0.212 4.212 22 C -0.226 4.226 23 H 0.084 0.916 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.047 0.953 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.758 8.015 -8.787 14.200 hybrid contribution 1.733 0.948 -1.467 2.460 sum -6.025 8.962 -10.253 14.892 Atomic orbital electron populations 1.21810 0.95767 1.01186 1.01740 1.21189 0.94621 0.95783 1.01544 1.21773 0.93404 0.96452 0.98128 0.91806 1.22416 0.98143 0.98391 0.95892 1.22412 0.93749 0.97777 1.01292 1.23065 0.98727 0.99513 0.97241 1.22346 0.95714 0.88311 0.96807 0.92858 1.60365 1.29532 1.18163 1.20812 1.21214 0.89513 0.94387 0.95744 1.19278 0.88226 0.93967 0.98525 1.21311 1.25802 1.17581 0.93395 0.94408 1.26768 0.99659 1.01719 0.93909 1.70799 1.25722 1.23801 1.37769 0.83060 0.74530 0.74003 0.75330 1.20688 1.19994 1.21633 1.22857 1.06544 1.01127 0.90677 1.22672 1.00169 1.00645 0.99107 0.91592 0.93488 0.93213 0.93095 0.93817 0.91479 0.90476 0.90365 0.91045 0.92297 0.91816 0.84475 0.95310 0.97255 0.92639 0.90570 0.89046 0.90396 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.77 71.98 0.70 -3.05 16 2 C -0.09 -2.91 4.30 30.59 0.13 -2.78 16 3 C -0.08 -2.17 2.92 -10.07 -0.03 -2.20 16 4 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 5 C -0.11 -2.34 5.56 31.67 0.18 -2.16 16 6 C -0.11 -2.28 6.91 31.91 0.22 -2.06 16 7 C -0.15 -3.69 6.50 31.69 0.21 -3.49 16 8 C 0.08 2.47 3.23 45.64 0.15 2.62 16 9 H 0.05 1.83 7.82 -2.39 -0.02 1.81 16 10 N -0.66 -25.36 4.03 -487.82 -1.96 -27.32 16 11 C 0.12 5.33 5.37 86.30 0.46 5.79 16 12 C 0.00 0.04 1.11 -52.93 -0.06 -0.02 16 13 C -0.54 -30.06 8.51 25.60 0.22 -29.84 16 14 H 0.04 2.14 7.82 -2.91 -0.02 2.11 16 15 C -0.02 -1.26 5.44 84.65 0.46 -0.80 16 16 N -0.94 -57.48 13.54 21.45 0.29 -57.19 16 17 Si 1.11 52.16 29.91 68.60 2.05 54.21 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 21 C -0.17 -7.36 9.93 30.59 0.30 -7.06 16 22 C -0.19 -8.77 8.58 30.59 0.26 -8.51 16 23 H 0.07 1.39 7.53 -2.39 -0.02 1.37 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.05 1.61 7.76 -2.39 -0.02 1.60 16 27 H 0.04 1.74 7.55 -2.39 -0.02 1.72 16 28 H 0.07 1.41 7.75 -2.39 -0.02 1.39 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.63 7.51 -2.39 -0.02 1.62 16 34 H 0.34 12.52 7.84 -89.70 -0.70 11.82 16 35 H 0.03 1.45 7.96 -2.38 -0.02 1.43 16 36 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 37 H 0.26 16.03 6.21 -92.71 -0.58 15.46 16 38 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 39 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -61.30 320.32 4.04 -57.26 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.46 Total: 26.60 kcal Atomic # 6 Polarization: -56.76 SS G_CDS: 3.20 Total: -53.56 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -1.67 Total: -84.51 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.05 Total: 54.21 kcal Total: -61.30 4.04 -57.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389907009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.020 kcal (2) G-P(sol) polarization free energy of solvation -61.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds