Wall clock time and date at job start Sun Mar 29 2020 22:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46991 * 2 1 4 4 H 1.09000 * 110.01814 * 303.84861 * 3 2 1 5 5 C 1.54265 * 110.03303 * 65.24702 * 3 2 1 6 6 C 1.54889 * 104.19498 * 142.89419 * 5 3 2 7 7 C 1.54885 * 102.74873 * 322.05376 * 6 5 3 8 8 C 1.53877 * 110.03197 * 182.41006 * 3 2 1 9 9 H 1.09003 * 110.03479 * 121.37692 * 8 3 2 10 10 N 1.46904 * 110.03178 * 0.02562 * 8 3 2 11 11 C 1.46896 * 111.00297 * 153.96809 * 10 8 3 12 12 C 1.52999 * 109.47349 * 185.41129 * 11 10 8 13 13 C 1.50699 * 115.55142 * 273.45598 * 12 11 10 14 14 H 1.07993 * 120.00037 * 121.41412 * 13 12 11 15 15 C 1.37875 * 119.99844 * 301.40360 * 13 12 11 16 16 N 1.31516 * 120.00258 * 353.96249 * 15 13 12 17 17 Si 1.86797 * 120.00031 * 173.95957 * 15 13 12 18 18 H 1.48497 * 109.47120 * 60.00069 * 17 15 13 19 19 H 1.48503 * 109.47150 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46955 * 300.00334 * 17 15 13 21 21 C 1.53002 * 117.49642 * 127.74303 * 12 11 10 22 22 C 1.53002 * 60.00281 * 252.51565 * 21 12 11 23 23 H 1.08999 * 109.47445 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47143 * 299.99844 * 1 2 3 25 25 H 1.09002 * 109.47362 * 59.99964 * 1 2 3 26 26 H 1.09001 * 109.47143 * 240.00156 * 2 1 3 27 27 H 1.09002 * 109.47362 * 120.00036 * 2 1 3 28 28 H 1.09005 * 110.48434 * 261.56797 * 5 3 2 29 29 H 1.09001 * 110.48562 * 24.21343 * 5 3 2 30 30 H 1.09002 * 110.75639 * 80.37214 * 6 5 3 31 31 H 1.09005 * 110.75590 * 203.73986 * 6 5 3 32 32 H 1.08999 * 110.48504 * 279.26388 * 7 6 5 33 33 H 1.09001 * 110.48486 * 156.62459 * 7 6 5 34 34 H 1.00905 * 110.99451 * 277.92111 * 10 8 3 35 35 H 1.08999 * 109.46826 * 305.41490 * 11 10 8 36 36 H 1.09004 * 109.47248 * 65.41167 * 11 10 8 37 37 H 0.96997 * 120.00240 * 185.02278 * 16 15 13 38 38 H 1.09000 * 117.50152 * 0.02562 * 21 12 11 39 39 H 1.08995 * 117.49747 * 145.02645 * 21 12 11 40 40 H 1.09002 * 117.49953 * 252.51603 * 22 21 12 41 41 H 1.08995 * 117.50006 * 107.48571 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6265 1.9844 -0.8506 5 6 1.6439 2.1430 1.3162 6 6 2.8590 3.0448 1.6470 7 6 4.0620 2.1674 1.2205 8 6 3.5774 1.4580 -0.0608 9 1 3.9108 2.0071 -0.9414 10 7 4.0933 0.0831 -0.1012 11 6 5.4071 0.0328 -0.7564 12 6 5.8497 -1.4247 -0.9005 13 6 6.5754 -2.0040 0.2864 14 1 6.1837 -2.8783 0.7847 15 6 7.7395 -1.4178 0.7360 16 7 8.2807 -0.4277 0.0604 17 14 8.5480 -2.0297 2.3048 18 1 8.9042 -3.4632 2.1515 19 1 9.7771 -1.2393 2.5692 20 1 7.6051 -1.8728 3.4413 21 6 6.2771 -1.8990 -2.2909 22 6 4.9435 -2.3622 -1.7011 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.7483 2.7474 1.1721 29 1 1.4870 1.4091 2.1067 30 1 2.8267 3.9655 1.0645 31 1 2.8991 3.2628 2.7142 32 1 4.2956 1.4375 1.9956 33 1 4.9311 2.7895 1.0067 34 1 4.1358 -0.3144 0.8253 35 1 5.3388 0.4910 -1.7430 36 1 6.1350 0.5756 -0.1533 37 1 9.1367 -0.0637 0.3354 38 1 6.2434 -1.1726 -3.1029 39 1 7.0835 -2.6301 -2.3474 40 1 4.8726 -3.3982 -1.3695 41 1 4.0322 -1.9407 -2.1250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389907012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:30 Heat of formation + Delta-G solvation = 0.789488 kcal Electronic energy + Delta-G solvation = -17770.282815 eV Core-core repulsion = 15263.666276 eV Total energy + Delta-G solvation = -2506.616539 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.82046 -36.52374 -33.10674 -32.49288 -31.99208 -27.31114 -27.18460 -25.48554 -23.43014 -22.31921 -20.93442 -20.48119 -18.98993 -18.50141 -16.20754 -15.42150 -15.02721 -14.65052 -14.17189 -13.78666 -13.67807 -13.25217 -13.02874 -12.63098 -12.33646 -11.91231 -11.56239 -11.29113 -11.11099 -10.94822 -10.90146 -10.81808 -10.73535 -10.46399 -10.40068 -10.27522 -10.09873 -10.01731 -9.90896 -9.23792 -8.76266 -8.48396 -8.04207 -7.31355 -6.01298 -4.05929 3.29066 3.34456 3.37142 4.39994 4.82857 4.90552 4.97466 5.17370 5.29353 5.46654 5.56982 5.66237 5.71350 5.79993 5.83898 5.88465 5.89032 6.06590 6.14185 6.16813 6.26671 6.29468 6.32288 6.48083 6.52401 6.59311 6.62172 6.67372 6.79937 6.91148 6.96032 7.04078 7.08504 7.21777 7.54521 7.65564 7.93585 8.13970 8.36381 8.53782 8.95378 9.56733 11.05158 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.007578 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.485218 B = 3694.155245 C = 4252.296669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 C -0.081 4.081 4 H 0.062 0.938 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.151 4.151 8 C 0.087 3.913 9 H 0.068 0.932 10 N -0.674 5.674 11 C 0.102 3.898 12 C 0.057 3.943 13 C -0.491 4.491 14 H 0.058 0.942 15 C 0.069 3.931 16 N -0.881 5.881 17 Si 0.887 3.113 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.188 4.188 22 C -0.192 4.192 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.342 0.658 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.260 0.740 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 5.212 1.301 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.134 4.134 3 C -0.100 4.100 4 H 0.081 0.919 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.190 4.190 8 C -0.025 4.025 9 H 0.086 0.914 10 N -0.304 5.304 11 C -0.026 4.026 12 C 0.056 3.944 13 C -0.529 4.529 14 H 0.076 0.924 15 C -0.133 4.133 16 N -0.518 5.518 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.227 4.227 22 C -0.229 4.229 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.301 5.209 0.754 12.467 hybrid contribution 1.261 0.131 1.424 1.907 sum -10.040 5.340 2.178 11.579 Atomic orbital electron populations 1.21883 0.97780 1.00763 1.00749 1.21282 0.92780 0.95769 1.03532 1.21802 0.95053 0.96570 0.96602 0.91940 1.22458 0.97131 0.98221 0.97827 1.22431 0.95500 0.98008 1.00214 1.23120 0.97575 0.99402 0.98914 1.22176 0.93829 0.90223 0.96231 0.91357 1.60711 1.28066 1.16000 1.25610 1.21462 0.87531 0.97276 0.96336 1.18779 0.95430 0.90203 0.90000 1.20554 1.07963 1.12293 1.12097 0.92430 1.24973 0.97041 0.94626 0.96674 1.69951 1.17154 1.25283 1.39388 0.86742 0.78748 0.78852 0.84166 1.20301 1.21373 1.20216 1.22802 0.96885 1.03621 0.99366 1.22686 0.93069 0.99264 1.07876 0.93395 0.93514 0.93578 0.90530 0.92087 0.92514 0.91727 0.92040 0.92290 0.91407 0.92118 0.83979 0.94712 0.92760 0.93021 0.92201 0.90821 0.91354 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.74 37.16 0.36 -1.46 16 2 C -0.10 -1.35 4.27 -26.73 -0.11 -1.46 16 3 C -0.08 -1.12 2.96 -89.50 -0.26 -1.38 16 4 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 5 C -0.12 -1.46 5.40 -25.07 -0.14 -1.59 16 6 C -0.12 -1.56 6.91 -24.74 -0.17 -1.74 16 7 C -0.15 -2.33 6.47 -25.08 -0.16 -2.49 16 8 C 0.09 1.41 3.22 -66.59 -0.21 1.19 16 9 H 0.07 1.16 7.71 -51.93 -0.40 0.76 16 10 N -0.67 -12.79 4.21 -105.54 -0.44 -13.23 16 11 C 0.10 2.32 5.36 -3.83 -0.02 2.30 16 12 C 0.06 1.39 1.63 -155.66 -0.25 1.13 16 13 C -0.49 -13.21 8.88 -34.44 -0.31 -13.52 16 14 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 15 C 0.07 1.88 5.21 -17.82 -0.09 1.78 16 16 N -0.88 -24.62 11.98 55.43 0.66 -23.96 16 17 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.19 -4.48 9.88 -26.73 -0.26 -4.74 16 22 C -0.19 -4.26 9.81 -26.73 -0.26 -4.53 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.51 7.42 -51.93 -0.39 0.13 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.22 7.70 -51.93 -0.40 0.82 16 27 H 0.06 0.92 7.60 -51.93 -0.39 0.52 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.80 7.80 -51.93 -0.41 0.40 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.13 7.54 -51.93 -0.39 0.73 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.34 6.80 7.82 -39.29 -0.31 6.49 16 35 H 0.03 0.79 7.68 -51.93 -0.40 0.39 16 36 H 0.05 1.38 6.62 -51.93 -0.34 1.04 16 37 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 38 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 39 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 320.30 15.07 4.83 4.83 Total: -1.00 -26.47 320.30 -9.49 -35.97 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.62 Total: 7.00 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -1.90 Total: -26.51 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.22 Total: -37.19 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.47 -9.49 -35.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389907012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.757 kcal (2) G-P(sol) polarization free energy of solvation -26.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds