Wall clock time and date at job start Sun Mar 29 2020 22:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46991 * 2 1 4 4 H 1.09000 * 110.01814 * 303.84861 * 3 2 1 5 5 C 1.54265 * 110.03303 * 65.24702 * 3 2 1 6 6 C 1.54889 * 104.19498 * 142.89419 * 5 3 2 7 7 C 1.54885 * 102.74873 * 322.05376 * 6 5 3 8 8 C 1.53877 * 110.03197 * 182.41006 * 3 2 1 9 9 H 1.09003 * 110.03479 * 121.37692 * 8 3 2 10 10 N 1.46904 * 110.03178 * 0.02562 * 8 3 2 11 11 C 1.46896 * 111.00297 * 153.96809 * 10 8 3 12 12 C 1.52999 * 109.47349 * 185.41129 * 11 10 8 13 13 C 1.50699 * 115.55142 * 273.45598 * 12 11 10 14 14 H 1.07993 * 120.00037 * 121.41412 * 13 12 11 15 15 C 1.37875 * 119.99844 * 301.40360 * 13 12 11 16 16 N 1.31516 * 120.00258 * 353.96249 * 15 13 12 17 17 Si 1.86797 * 120.00031 * 173.95957 * 15 13 12 18 18 H 1.48497 * 109.47120 * 60.00069 * 17 15 13 19 19 H 1.48503 * 109.47150 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46955 * 300.00334 * 17 15 13 21 21 C 1.53002 * 117.49642 * 127.74303 * 12 11 10 22 22 C 1.53002 * 60.00281 * 252.51565 * 21 12 11 23 23 H 1.08999 * 109.47445 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47143 * 299.99844 * 1 2 3 25 25 H 1.09002 * 109.47362 * 59.99964 * 1 2 3 26 26 H 1.09001 * 109.47143 * 240.00156 * 2 1 3 27 27 H 1.09002 * 109.47362 * 120.00036 * 2 1 3 28 28 H 1.09005 * 110.48434 * 261.56797 * 5 3 2 29 29 H 1.09001 * 110.48562 * 24.21343 * 5 3 2 30 30 H 1.09002 * 110.75639 * 80.37214 * 6 5 3 31 31 H 1.09005 * 110.75590 * 203.73986 * 6 5 3 32 32 H 1.08999 * 110.48504 * 279.26388 * 7 6 5 33 33 H 1.09001 * 110.48486 * 156.62459 * 7 6 5 34 34 H 1.00905 * 110.99451 * 277.92111 * 10 8 3 35 35 H 1.08999 * 109.46826 * 305.41490 * 11 10 8 36 36 H 1.09004 * 109.47248 * 65.41167 * 11 10 8 37 37 H 0.96997 * 120.00240 * 185.02278 * 16 15 13 38 38 H 1.09000 * 117.50152 * 0.02562 * 21 12 11 39 39 H 1.08995 * 117.49747 * 145.02645 * 21 12 11 40 40 H 1.09002 * 117.49953 * 252.51603 * 22 21 12 41 41 H 1.08995 * 117.50006 * 107.48571 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6265 1.9844 -0.8506 5 6 1.6439 2.1430 1.3162 6 6 2.8590 3.0448 1.6470 7 6 4.0620 2.1674 1.2205 8 6 3.5774 1.4580 -0.0608 9 1 3.9108 2.0071 -0.9414 10 7 4.0933 0.0831 -0.1012 11 6 5.4071 0.0328 -0.7564 12 6 5.8497 -1.4247 -0.9005 13 6 6.5754 -2.0040 0.2864 14 1 6.1837 -2.8783 0.7847 15 6 7.7395 -1.4178 0.7360 16 7 8.2807 -0.4277 0.0604 17 14 8.5480 -2.0297 2.3048 18 1 8.9042 -3.4632 2.1515 19 1 9.7771 -1.2393 2.5692 20 1 7.6051 -1.8728 3.4413 21 6 6.2771 -1.8990 -2.2909 22 6 4.9435 -2.3622 -1.7011 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 0.7483 2.7474 1.1721 29 1 1.4870 1.4091 2.1067 30 1 2.8267 3.9655 1.0645 31 1 2.8991 3.2628 2.7142 32 1 4.2956 1.4375 1.9956 33 1 4.9311 2.7895 1.0067 34 1 4.1358 -0.3144 0.8253 35 1 5.3388 0.4910 -1.7430 36 1 6.1350 0.5756 -0.1533 37 1 9.1367 -0.0637 0.3354 38 1 6.2434 -1.1726 -3.1029 39 1 7.0835 -2.6301 -2.3474 40 1 4.8726 -3.3982 -1.3695 41 1 4.0322 -1.9407 -2.1250 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389907012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:29 Heat of formation + Delta-G solvation = -11.516464 kcal Electronic energy + Delta-G solvation = -17770.816441 eV Core-core repulsion = 15263.666276 eV Total energy + Delta-G solvation = -2507.150165 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10141 -38.32530 -34.51398 -34.07017 -33.66567 -28.69095 -28.32796 -27.48749 -25.08359 -23.41893 -22.80086 -21.64291 -20.89774 -19.73973 -18.07311 -16.84013 -16.64008 -16.27701 -15.67237 -15.34720 -15.08323 -14.68995 -14.19012 -14.12004 -13.75990 -13.42037 -13.10014 -12.95075 -12.81665 -12.70937 -12.48391 -12.23731 -12.01748 -11.94513 -11.83320 -11.63381 -11.51521 -11.13500 -11.10114 -11.01976 -10.75866 -10.44815 -9.95994 -8.93426 -8.08242 -6.18916 1.40593 1.41659 1.48736 2.41858 3.12404 3.37736 3.73413 3.78646 3.86875 4.10045 4.36192 4.39029 4.50458 4.57699 4.62178 4.68933 4.73847 4.79527 4.80420 4.85386 4.99353 5.03499 5.06693 5.08526 5.12999 5.14990 5.25060 5.28056 5.32132 5.39677 5.46985 5.49181 5.65150 5.66194 5.68501 5.82719 5.92354 6.46829 6.50790 6.70097 6.91575 7.46372 8.96908 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.007578 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.485218 B = 3694.155245 C = 4252.296669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.075 4.075 4 H 0.072 0.928 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.151 4.151 8 C 0.081 3.919 9 H 0.058 0.942 10 N -0.664 5.664 11 C 0.120 3.880 12 C 0.033 3.967 13 C -0.506 4.506 14 H 0.050 0.950 15 C 0.027 3.973 16 N -0.906 5.906 17 Si 0.946 3.054 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.270 1.270 21 C -0.195 4.195 22 C -0.166 4.166 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.336 0.664 35 H 0.030 0.970 36 H 0.021 0.979 37 H 0.259 0.741 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.900 5.674 1.998 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.094 4.094 4 H 0.091 0.909 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.191 4.191 8 C -0.029 4.029 9 H 0.076 0.924 10 N -0.293 5.293 11 C -0.009 4.009 12 C 0.032 3.968 13 C -0.544 4.544 14 H 0.068 0.932 15 C -0.173 4.173 16 N -0.544 5.544 17 Si 0.772 3.228 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.234 4.234 22 C -0.203 4.203 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.154 0.846 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.108 5.670 1.450 14.355 hybrid contribution 1.822 -0.020 1.169 2.165 sum -11.286 5.650 2.619 12.890 Atomic orbital electron populations 1.21813 0.95616 1.01343 1.01748 1.21196 0.94638 0.95442 1.01761 1.21766 0.92623 0.96869 0.98168 0.90913 1.22424 0.97724 0.98171 0.96575 1.22410 0.93878 0.97880 1.01157 1.23055 0.98560 0.99381 0.98064 1.22318 0.95830 0.88543 0.96248 0.92364 1.60718 1.25621 1.18005 1.24968 1.21116 0.88411 0.95693 0.95696 1.18905 0.96720 0.91502 0.89678 1.20796 1.08416 1.12205 1.13003 0.93158 1.25614 0.97614 0.94826 0.99232 1.70068 1.17343 1.26248 1.40768 0.85811 0.77840 0.78295 0.80887 1.19986 1.21222 1.19553 1.22775 0.97529 1.03711 0.99378 1.22637 0.92805 0.98895 1.05959 0.93127 0.92265 0.92755 0.92749 0.93425 0.90131 0.91752 0.90838 0.91077 0.92961 0.93529 0.84643 0.95157 0.96093 0.93202 0.91374 0.92255 0.91138 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.74 71.98 0.70 -2.40 16 2 C -0.09 -2.46 4.27 30.59 0.13 -2.33 16 3 C -0.08 -1.93 2.96 -10.07 -0.03 -1.96 16 4 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 5 C -0.11 -2.40 5.40 31.67 0.17 -2.23 16 6 C -0.12 -2.65 6.91 31.88 0.22 -2.43 16 7 C -0.15 -4.64 6.47 31.67 0.20 -4.44 16 8 C 0.08 2.61 3.22 45.64 0.15 2.75 16 9 H 0.06 1.98 7.71 -2.39 -0.02 1.96 16 10 N -0.66 -25.40 4.21 -487.83 -2.06 -27.45 16 11 C 0.12 5.56 5.36 86.30 0.46 6.02 16 12 C 0.03 1.62 1.63 -52.92 -0.09 1.53 16 13 C -0.51 -27.57 8.88 25.60 0.23 -27.34 16 14 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 15 C 0.03 1.49 5.21 84.65 0.44 1.93 16 16 N -0.91 -51.63 11.98 21.45 0.26 -51.38 16 17 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C -0.20 -9.34 9.88 30.60 0.30 -9.04 16 22 C -0.17 -7.28 9.81 30.60 0.30 -6.98 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 1.10 7.42 -2.39 -0.02 1.08 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.68 7.70 -2.39 -0.02 1.66 16 27 H 0.05 1.38 7.60 -2.39 -0.02 1.36 16 28 H 0.08 1.41 8.14 -2.38 -0.02 1.40 16 29 H 0.06 1.41 7.80 -2.39 -0.02 1.40 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.05 1.75 7.54 -2.39 -0.02 1.73 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.34 13.57 7.82 -89.69 -0.70 12.87 16 35 H 0.03 1.40 7.68 -2.39 -0.02 1.38 16 36 H 0.02 1.10 6.62 -2.38 -0.02 1.09 16 37 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 38 H 0.07 3.09 8.05 -2.39 -0.02 3.07 16 39 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -56.41 320.30 3.69 -52.72 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.27 Total: 27.75 kcal Atomic # 6 Polarization: -50.09 SS G_CDS: 3.19 Total: -46.90 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -1.80 Total: -78.83 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -56.41 3.69 -52.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389907012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.203 kcal (2) G-P(sol) polarization free energy of solvation -56.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds