Wall clock time and date at job start Sun Mar 29 2020 22:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.47182 * 2 1 4 4 H 1.09005 * 110.43145 * 307.54206 * 3 2 1 5 5 C 1.54884 * 110.48888 * 70.22140 * 3 2 1 6 6 C 1.54890 * 102.75091 * 156.61993 * 5 3 2 7 7 C 1.54262 * 104.19375 * 322.06111 * 6 5 3 8 8 C 1.53873 * 106.60136 * 23.60548 * 7 6 5 9 9 H 1.08995 * 110.07367 * 240.69211 * 8 7 6 10 10 N 1.46907 * 110.03317 * 119.28376 * 8 7 6 11 11 C 1.46900 * 110.99539 * 87.83383 * 10 8 7 12 12 C 1.53007 * 109.46653 * 174.71720 * 11 10 8 13 13 C 1.50698 * 115.55001 * 65.17072 * 12 11 10 14 14 H 1.08002 * 120.00239 * 265.01507 * 13 12 11 15 15 C 1.37880 * 120.00224 * 85.01005 * 13 12 11 16 16 N 1.31517 * 119.99977 * 353.12393 * 15 13 12 17 17 Si 1.86799 * 120.00223 * 173.11615 * 15 13 12 18 18 H 1.48507 * 109.46648 * 60.00288 * 17 15 13 19 19 H 1.48500 * 109.47328 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47264 * 300.00708 * 17 15 13 21 21 C 1.52997 * 117.49718 * 279.49902 * 12 11 10 22 22 C 1.52998 * 117.49736 * 210.83643 * 12 11 10 23 23 H 1.09001 * 109.47002 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46864 * 300.00399 * 1 2 3 25 25 H 1.08998 * 109.46859 * 60.00106 * 1 2 3 26 26 H 1.09006 * 109.46632 * 119.99641 * 2 1 3 27 27 H 1.08996 * 109.46864 * 239.99601 * 2 1 3 28 28 H 1.09007 * 110.75752 * 274.93895 * 5 3 2 29 29 H 1.09001 * 110.75471 * 38.30580 * 5 3 2 30 30 H 1.09003 * 110.49010 * 203.37872 * 6 5 3 31 31 H 1.09007 * 110.48323 * 80.73742 * 6 5 3 32 32 H 1.09006 * 110.03212 * 264.32010 * 7 6 5 33 33 H 1.09004 * 110.03280 * 142.89455 * 7 6 5 34 34 H 1.00901 * 110.99604 * 323.88687 * 10 8 7 35 35 H 1.09006 * 109.47353 * 294.71362 * 11 10 8 36 36 H 1.09000 * 109.47185 * 54.72009 * 11 10 8 37 37 H 0.96997 * 120.00132 * 185.04287 * 16 15 13 38 38 H 1.08995 * 117.50042 * 359.97438 * 21 12 11 39 39 H 1.08995 * 117.49775 * 145.02607 * 21 12 11 40 40 H 1.08991 * 117.50224 * 214.97973 * 22 12 11 41 41 H 1.09000 * 117.49572 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5801 2.0087 -0.8099 5 6 1.7579 2.1172 1.3653 6 6 2.8154 3.2480 1.4127 7 6 4.0702 2.6196 0.7723 8 6 3.5773 1.4716 -0.1259 9 1 3.9977 0.5247 0.2128 10 7 3.9633 1.7228 -1.5209 11 6 5.3033 1.1898 -1.8004 12 6 5.6161 1.3518 -3.2894 13 6 5.7264 2.7726 -3.7795 14 1 4.8695 3.2595 -4.2213 15 6 6.9211 3.4510 -3.6640 16 7 7.9235 2.9102 -3.0065 17 14 7.1161 5.1383 -4.4415 18 1 6.1168 6.0699 -3.8594 19 1 8.4845 5.6505 -4.1761 20 1 6.9021 5.0356 -5.9073 21 6 5.0302 0.3162 -4.2511 22 6 6.5284 0.3083 -3.9372 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 0.7494 2.5301 1.3911 29 1 1.9090 1.4125 2.1830 30 1 3.0178 3.5381 2.4438 31 1 2.4807 4.1078 0.8323 32 1 4.7299 2.2301 1.5478 33 1 4.5959 3.3632 0.1732 34 1 3.9129 2.7068 -1.7383 35 1 6.0414 1.7356 -1.2126 36 1 5.3367 0.1331 -1.5350 37 1 8.7383 3.4163 -2.8622 38 1 4.4222 -0.4808 -3.8231 39 1 4.7248 0.6624 -5.2385 40 1 7.2079 0.6492 -4.7181 41 1 6.9060 -0.4934 -3.3025 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389907018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:31 Heat of formation + Delta-G solvation = -18.850162 kcal Electronic energy + Delta-G solvation = -17544.377182 eV Core-core repulsion = 15036.909004 eV Total energy + Delta-G solvation = -2507.468178 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.99602 -38.35487 -34.83730 -33.97213 -33.58058 -28.74433 -28.39618 -27.43339 -25.30945 -23.16748 -22.80445 -21.24833 -21.09607 -20.40678 -17.89571 -16.66940 -16.54230 -16.45075 -15.70972 -15.31898 -15.11546 -14.80221 -14.36649 -13.95038 -13.85782 -13.46395 -13.17698 -12.95925 -12.83270 -12.66309 -12.56619 -12.27109 -12.10639 -11.97391 -11.83909 -11.63021 -11.46280 -11.35739 -11.20195 -11.09719 -10.72216 -10.38464 -9.91601 -8.97837 -8.08095 -6.19230 1.40667 1.42925 1.49395 2.42680 3.19697 3.32617 3.70960 3.72325 3.83429 4.10619 4.30108 4.35373 4.48739 4.54403 4.56969 4.66147 4.69212 4.74269 4.80667 4.84097 4.93859 4.96408 5.03939 5.06565 5.07676 5.10330 5.19858 5.26702 5.28302 5.33703 5.40005 5.43384 5.55831 5.66157 5.68014 5.71609 5.81001 6.45221 6.52831 6.72278 6.90319 7.48592 8.99143 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025035 B = 0.006855 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.161418 B = 4083.561818 C = 4676.155783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.074 4.074 4 H 0.068 0.932 5 C -0.110 4.110 6 C -0.117 4.117 7 C -0.154 4.154 8 C 0.083 3.917 9 H 0.063 0.937 10 N -0.671 5.671 11 C 0.124 3.876 12 C 0.028 3.972 13 C -0.504 4.504 14 H 0.052 0.948 15 C 0.027 3.973 16 N -0.909 5.909 17 Si 0.946 3.054 18 H -0.270 1.270 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.178 4.178 22 C -0.170 4.170 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.338 0.662 35 H 0.001 0.999 36 H 0.040 0.960 37 H 0.258 0.742 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.803 -2.558 9.000 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.093 4.093 4 H 0.086 0.914 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.194 4.194 8 C -0.027 4.027 9 H 0.082 0.918 10 N -0.300 5.300 11 C -0.005 4.005 12 C 0.027 3.973 13 C -0.542 4.542 14 H 0.070 0.930 15 C -0.174 4.174 16 N -0.547 5.547 17 Si 0.772 3.228 18 H -0.195 1.195 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.215 4.215 22 C -0.208 4.208 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.156 0.844 35 H 0.020 0.980 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.903 -3.115 8.745 15.095 hybrid contribution 1.494 1.530 -0.181 2.146 sum -10.408 -1.585 8.564 13.572 Atomic orbital electron populations 1.21731 0.94792 1.01765 1.01931 1.21463 0.96572 0.95468 1.01224 1.21948 0.92998 0.96681 0.97647 0.91387 1.22537 0.98829 0.96949 0.96425 1.22283 0.94469 0.98163 1.00563 1.22886 0.98696 0.98248 0.99522 1.22390 0.96296 0.96969 0.87073 0.91822 1.60551 1.26716 1.22096 1.20686 1.21133 0.88205 0.95725 0.95477 1.18901 0.98144 0.90146 0.90071 1.20661 0.95933 0.97631 1.39935 0.92989 1.25644 0.95454 1.00855 0.95408 1.70096 1.05496 1.37964 1.41117 0.85813 0.76982 0.80749 0.79282 1.19527 1.21323 1.20007 1.22826 0.94836 1.03166 1.00664 1.22457 0.92214 1.02539 1.03632 0.92377 0.91767 0.93293 0.91890 0.93476 0.90199 0.90691 0.90728 0.92018 0.92255 0.94069 0.84365 0.98049 0.94135 0.93291 0.89750 0.91028 0.92589 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.79 71.99 0.70 -2.05 16 2 C -0.11 -2.56 5.28 30.60 0.16 -2.40 16 3 C -0.07 -1.91 2.56 -9.72 -0.02 -1.93 16 4 H 0.07 1.95 8.05 -2.38 -0.02 1.93 16 5 C -0.11 -2.29 5.67 31.88 0.18 -2.11 16 6 C -0.12 -2.77 6.83 31.67 0.22 -2.56 16 7 C -0.15 -4.70 6.43 31.32 0.20 -4.49 16 8 C 0.08 2.66 2.80 45.64 0.13 2.78 16 9 H 0.06 2.09 7.42 -2.39 -0.02 2.07 16 10 N -0.67 -26.44 6.18 -487.81 -3.02 -29.45 16 11 C 0.12 5.67 5.43 86.31 0.47 6.13 16 12 C 0.03 1.40 1.56 -52.93 -0.08 1.32 16 13 C -0.50 -27.42 8.33 25.60 0.21 -27.21 16 14 H 0.05 2.84 7.82 -2.91 -0.02 2.81 16 15 C 0.03 1.45 5.39 84.65 0.46 1.91 16 16 N -0.91 -52.27 12.94 21.45 0.28 -51.99 16 17 Si 0.95 43.52 29.55 68.60 2.03 45.55 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 C -0.18 -7.96 9.96 30.62 0.30 -7.65 16 22 C -0.17 -8.29 9.45 30.62 0.29 -8.00 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.05 7.55 -2.39 -0.02 1.03 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.36 8.02 -2.38 -0.02 1.34 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.08 1.42 8.06 -2.38 -0.02 1.40 16 29 H 0.07 1.41 7.97 -2.39 -0.02 1.40 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.04 1.47 7.56 -2.38 -0.02 1.45 16 34 H 0.34 14.31 7.72 -89.69 -0.69 13.61 16 35 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 36 H 0.04 1.77 7.89 -2.39 -0.02 1.75 16 37 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 38 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -57.50 325.41 2.78 -54.72 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.27 Total: 27.44 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 3.22 Total: -46.26 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -2.74 Total: -81.44 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -57.50 2.78 -54.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389907018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.873 kcal (2) G-P(sol) polarization free energy of solvation -57.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds