Wall clock time and date at job start Sun Mar 29 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 H 1.09000 * 110.05359 * 53.58346 * 3 2 1 5 5 C 1.53870 * 110.03234 * 292.16451 * 3 2 1 6 6 C 1.54267 * 106.60152 * 240.71534 * 5 3 2 7 7 C 1.54893 * 104.19275 * 336.39150 * 6 5 3 8 8 C 1.54263 * 110.03431 * 174.99859 * 3 2 1 9 9 H 1.09002 * 110.60075 * 24.15496 * 8 3 2 10 10 N 1.46901 * 110.48441 * 261.57612 * 8 3 2 11 11 C 1.46903 * 111.00031 * 158.77363 * 10 8 3 12 12 C 1.52999 * 109.47329 * 174.87749 * 11 10 8 13 13 C 1.50699 * 115.54942 * 296.15306 * 12 11 10 14 14 H 1.07998 * 119.99840 * 95.19732 * 13 12 11 15 15 C 1.37874 * 119.99986 * 275.19634 * 13 12 11 16 16 N 1.31517 * 119.99801 * 355.14179 * 15 13 12 17 17 Si 1.86801 * 120.00042 * 175.13333 * 15 13 12 18 18 H 1.48502 * 109.47085 * 270.00384 * 17 15 13 19 19 H 1.48504 * 109.47075 * 30.00211 * 17 15 13 20 20 H 1.48499 * 109.47002 * 150.00442 * 17 15 13 21 21 C 1.53007 * 117.49898 * 81.81869 * 12 11 10 22 22 C 1.52995 * 117.49916 * 150.48031 * 12 11 10 23 23 H 1.08998 * 109.46891 * 60.00632 * 1 2 3 24 24 H 1.09001 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47587 * 300.00067 * 1 2 3 26 26 H 1.09001 * 109.47587 * 239.99933 * 2 1 3 27 27 H 1.08998 * 109.46888 * 119.99925 * 2 1 3 28 28 H 1.09003 * 110.03639 * 121.43034 * 5 3 2 29 29 H 1.09001 * 110.07552 * 0.02562 * 5 3 2 30 30 H 1.08999 * 110.48836 * 217.71031 * 6 5 3 31 31 H 1.08997 * 110.59762 * 95.12288 * 6 5 3 32 32 H 1.09004 * 110.75280 * 279.62721 * 7 6 5 33 33 H 1.08993 * 110.91664 * 156.33103 * 7 6 5 34 34 H 1.00897 * 111.00524 * 34.81643 * 10 8 3 35 35 H 1.08995 * 109.47436 * 54.87278 * 11 10 8 36 36 H 1.09006 * 109.46474 * 294.87501 * 11 10 8 37 37 H 0.97007 * 119.99574 * 179.97438 * 16 15 13 38 38 H 1.08990 * 117.49998 * 215.00167 * 21 12 11 39 39 H 1.08998 * 117.49819 * 0.03067 * 21 12 11 40 40 H 1.08996 * 117.50163 * 359.97438 * 22 12 11 41 41 H 1.09000 * 117.49853 * 144.97462 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9975 0.8240 5 6 1.7015 2.1212 -1.3388 6 6 3.0449 2.5270 -1.9793 7 6 4.0201 2.6343 -0.7807 8 6 3.5773 1.4596 0.1263 9 1 4.0019 0.5211 -0.2304 10 7 3.9760 1.7063 1.5185 11 6 5.3476 1.2407 1.7638 12 6 5.7718 1.6282 3.1818 13 6 5.8523 3.1081 3.4546 14 1 5.0127 3.6216 3.8993 15 6 6.9978 3.8064 3.1366 16 7 8.0539 3.1663 2.6844 17 14 7.0495 5.6617 3.3479 18 1 6.6002 6.3156 2.0925 19 1 6.1509 6.0584 4.4616 20 1 8.4385 6.0861 3.6573 21 6 5.3167 0.7222 4.3277 22 6 6.7831 0.7235 3.8886 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.0886 3.0057 -1.1647 29 1 1.1734 1.4237 -1.9889 30 1 2.9522 3.4892 -2.4831 31 1 3.3828 1.7623 -2.6787 32 1 3.8965 3.5874 -0.2663 33 1 5.0522 2.5036 -1.1058 34 1 3.3280 1.2770 2.1618 35 1 6.0225 1.7030 1.0435 36 1 5.3880 0.1568 1.6558 37 1 8.8597 3.6577 2.4604 38 1 5.0755 1.1966 5.2789 39 1 4.7154 -0.1500 4.0713 40 1 7.1459 -0.1480 3.3436 41 1 7.5069 1.1987 4.5507 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389907019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:34 Heat of formation + Delta-G solvation = -2.342355 kcal Electronic energy + Delta-G solvation = -17547.888153 eV Core-core repulsion = 15041.135807 eV Total energy + Delta-G solvation = -2506.752346 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.77050 -36.61904 -33.42653 -32.63998 -31.73270 -27.47120 -27.26078 -25.41064 -23.76295 -22.36855 -20.97395 -19.75918 -19.53620 -18.72277 -16.01887 -15.72779 -15.07863 -14.56053 -14.27673 -14.01966 -13.63606 -13.16980 -13.06940 -12.93460 -12.59110 -11.90662 -11.69251 -11.57453 -11.22042 -10.96997 -10.84388 -10.79464 -10.60156 -10.41648 -10.33054 -10.31407 -10.20489 -10.15620 -10.02534 -9.25261 -8.83142 -8.26412 -7.96545 -7.44885 -5.88282 -3.90062 3.39148 3.45145 3.48680 4.53228 4.73531 4.79532 4.86573 5.09508 5.29790 5.32966 5.41768 5.43067 5.55747 5.73438 5.79585 5.81993 5.85837 5.88714 6.00896 6.09225 6.16311 6.18396 6.24968 6.34350 6.37015 6.41354 6.55659 6.56592 6.62336 6.70209 6.81017 6.82057 7.02702 7.21807 7.58503 7.66052 8.03308 8.09529 8.27190 8.63725 9.08809 9.72652 11.21047 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.007069 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.415945 B = 3959.756301 C = 4612.051829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.094 4.094 4 H 0.080 0.920 5 C -0.114 4.114 6 C -0.125 4.125 7 C -0.111 4.111 8 C 0.088 3.912 9 H 0.036 0.964 10 N -0.661 5.661 11 C 0.109 3.891 12 C 0.050 3.950 13 C -0.465 4.465 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.276 1.276 20 H -0.290 1.290 21 C -0.217 4.217 22 C -0.154 4.154 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.329 0.671 35 H 0.071 0.929 36 H -0.007 1.007 37 H 0.256 0.744 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.062 -4.772 -7.212 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.113 4.113 4 H 0.099 0.901 5 C -0.152 4.152 6 C -0.163 4.163 7 C -0.149 4.149 8 C -0.023 4.023 9 H 0.054 0.946 10 N -0.291 5.291 11 C -0.020 4.020 12 C 0.049 3.951 13 C -0.503 4.503 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.201 1.201 20 H -0.216 1.216 21 C -0.255 4.255 22 C -0.192 4.192 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.011 0.989 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.677 -4.089 -7.386 13.612 hybrid contribution 0.106 -0.028 0.073 0.131 sum -10.571 -4.117 -7.313 13.497 Atomic orbital electron populations 1.21794 0.96087 1.01088 1.01826 1.21637 0.95625 0.96677 1.01628 1.21954 0.95666 0.95436 0.98234 0.90122 1.22139 0.97329 0.99749 0.95980 1.22342 0.95572 1.00572 0.97853 1.22480 0.97973 0.99831 0.94616 1.22379 0.92977 0.96231 0.90699 0.94567 1.60380 1.03879 1.63313 1.01536 1.21543 0.88425 0.92854 0.99147 1.18846 0.96812 0.92465 0.86983 1.20293 0.99373 0.90687 1.39977 0.92387 1.24928 0.95544 0.97717 0.95301 1.70026 1.02652 1.34861 1.45028 0.86668 0.76794 0.86501 0.78397 1.20755 1.20072 1.21648 1.22986 0.98495 1.02417 1.01571 1.22490 0.90946 1.00987 1.04760 0.92758 0.93238 0.92711 0.92309 0.92286 0.92121 0.92216 0.92108 0.92331 0.90269 0.92198 0.85351 0.91064 0.98929 0.93423 0.90630 0.92365 0.92410 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.74 37.16 0.36 -1.15 16 2 C -0.12 -1.39 5.06 -26.73 -0.14 -1.52 16 3 C -0.09 -1.26 2.41 -89.50 -0.22 -1.48 16 4 H 0.08 1.16 7.99 -51.93 -0.41 0.74 16 5 C -0.11 -1.38 5.96 -25.61 -0.15 -1.53 16 6 C -0.13 -1.63 6.83 -25.07 -0.17 -1.80 16 7 C -0.11 -1.83 6.44 -24.74 -0.16 -1.99 16 8 C 0.09 1.44 2.69 -66.06 -0.18 1.26 16 9 H 0.04 0.61 7.63 -51.93 -0.40 0.21 16 10 N -0.66 -12.96 6.15 -104.98 -0.65 -13.60 16 11 C 0.11 2.46 5.34 -3.82 -0.02 2.44 16 12 C 0.05 1.23 1.63 -155.66 -0.25 0.98 16 13 C -0.47 -12.84 8.72 -34.44 -0.30 -13.14 16 14 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 15 C 0.07 1.85 5.43 -17.82 -0.10 1.76 16 16 N -0.89 -25.56 12.66 55.43 0.70 -24.86 16 17 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C -0.22 -4.83 9.96 -26.69 -0.27 -5.09 16 22 C -0.15 -3.71 9.16 -26.69 -0.24 -3.96 16 23 H 0.05 0.51 7.00 -51.93 -0.36 0.15 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.64 6.87 -51.93 -0.36 0.28 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.33 6.10 8.48 -39.29 -0.33 5.77 16 35 H 0.07 1.79 8.04 -51.93 -0.42 1.37 16 36 H -0.01 -0.16 8.10 -51.93 -0.42 -0.58 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.08 2.19 8.14 -51.93 -0.42 1.76 16 LS Contribution 325.13 15.07 4.90 4.90 Total: -1.00 -28.02 325.13 -9.64 -37.66 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.74 Total: 4.36 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -1.83 Total: -25.22 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.06 Total: -38.46 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.02 -9.64 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389907019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.320 kcal (2) G-P(sol) polarization free energy of solvation -28.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds