Wall clock time and date at job start Sun Mar 29 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 H 1.09000 * 110.05359 * 53.58346 * 3 2 1 5 5 C 1.53870 * 110.03234 * 292.16451 * 3 2 1 6 6 C 1.54267 * 106.60152 * 240.71534 * 5 3 2 7 7 C 1.54893 * 104.19275 * 336.39150 * 6 5 3 8 8 C 1.54263 * 110.03431 * 174.99859 * 3 2 1 9 9 H 1.09002 * 110.60075 * 24.15496 * 8 3 2 10 10 N 1.46901 * 110.48441 * 261.57612 * 8 3 2 11 11 C 1.46903 * 111.00031 * 158.77363 * 10 8 3 12 12 C 1.52999 * 109.47329 * 174.87749 * 11 10 8 13 13 C 1.50699 * 115.54942 * 296.15306 * 12 11 10 14 14 H 1.07998 * 119.99840 * 95.19732 * 13 12 11 15 15 C 1.37874 * 119.99986 * 275.19634 * 13 12 11 16 16 N 1.31517 * 119.99801 * 355.14179 * 15 13 12 17 17 Si 1.86801 * 120.00042 * 175.13333 * 15 13 12 18 18 H 1.48502 * 109.47085 * 270.00384 * 17 15 13 19 19 H 1.48504 * 109.47075 * 30.00211 * 17 15 13 20 20 H 1.48499 * 109.47002 * 150.00442 * 17 15 13 21 21 C 1.53007 * 117.49898 * 81.81869 * 12 11 10 22 22 C 1.52995 * 117.49916 * 150.48031 * 12 11 10 23 23 H 1.08998 * 109.46891 * 60.00632 * 1 2 3 24 24 H 1.09001 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47587 * 300.00067 * 1 2 3 26 26 H 1.09001 * 109.47587 * 239.99933 * 2 1 3 27 27 H 1.08998 * 109.46888 * 119.99925 * 2 1 3 28 28 H 1.09003 * 110.03639 * 121.43034 * 5 3 2 29 29 H 1.09001 * 110.07552 * 0.02562 * 5 3 2 30 30 H 1.08999 * 110.48836 * 217.71031 * 6 5 3 31 31 H 1.08997 * 110.59762 * 95.12288 * 6 5 3 32 32 H 1.09004 * 110.75280 * 279.62721 * 7 6 5 33 33 H 1.08993 * 110.91664 * 156.33103 * 7 6 5 34 34 H 1.00897 * 111.00524 * 34.81643 * 10 8 3 35 35 H 1.08995 * 109.47436 * 54.87278 * 11 10 8 36 36 H 1.09006 * 109.46474 * 294.87501 * 11 10 8 37 37 H 0.97007 * 119.99574 * 179.97438 * 16 15 13 38 38 H 1.08990 * 117.49998 * 215.00167 * 21 12 11 39 39 H 1.08998 * 117.49819 * 0.03067 * 21 12 11 40 40 H 1.08996 * 117.50163 * 359.97438 * 22 12 11 41 41 H 1.09000 * 117.49853 * 144.97462 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9975 0.8240 5 6 1.7015 2.1212 -1.3388 6 6 3.0449 2.5270 -1.9793 7 6 4.0201 2.6343 -0.7807 8 6 3.5773 1.4596 0.1263 9 1 4.0019 0.5211 -0.2304 10 7 3.9760 1.7063 1.5185 11 6 5.3476 1.2407 1.7638 12 6 5.7718 1.6282 3.1818 13 6 5.8523 3.1081 3.4546 14 1 5.0127 3.6216 3.8993 15 6 6.9978 3.8064 3.1366 16 7 8.0539 3.1663 2.6844 17 14 7.0495 5.6617 3.3479 18 1 6.6002 6.3156 2.0925 19 1 6.1509 6.0584 4.4616 20 1 8.4385 6.0861 3.6573 21 6 5.3167 0.7222 4.3277 22 6 6.7831 0.7235 3.8886 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.0886 3.0057 -1.1647 29 1 1.1734 1.4237 -1.9889 30 1 2.9522 3.4892 -2.4831 31 1 3.3828 1.7623 -2.6787 32 1 3.8965 3.5874 -0.2663 33 1 5.0522 2.5036 -1.1058 34 1 3.3280 1.2770 2.1618 35 1 6.0225 1.7030 1.0435 36 1 5.3880 0.1568 1.6558 37 1 8.8597 3.6577 2.4604 38 1 5.0755 1.1966 5.2789 39 1 4.7154 -0.1500 4.0713 40 1 7.1459 -0.1480 3.3436 41 1 7.5069 1.1987 4.5507 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389907019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:34 Heat of formation + Delta-G solvation = -17.105014 kcal Electronic energy + Delta-G solvation = -17548.528310 eV Core-core repulsion = 15041.135807 eV Total energy + Delta-G solvation = -2507.392503 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01654 -38.41838 -34.81918 -33.91337 -33.69952 -28.80435 -28.39147 -27.44314 -25.35319 -23.38686 -22.83526 -21.08996 -21.03746 -20.25296 -17.96822 -16.95942 -16.64491 -16.28929 -15.86766 -15.32711 -14.98715 -14.82641 -14.52229 -14.02930 -13.80210 -13.57182 -13.28157 -12.82418 -12.79139 -12.67905 -12.42684 -12.32355 -12.13242 -11.99429 -11.88170 -11.65058 -11.36405 -11.28853 -11.21009 -11.10692 -10.85058 -10.32009 -9.89490 -9.02590 -8.02582 -6.09226 1.41542 1.43571 1.51885 2.47731 3.27249 3.29732 3.65069 3.68044 3.78961 4.03020 4.32721 4.36681 4.39863 4.46969 4.52555 4.58281 4.68796 4.72185 4.75436 4.82530 4.86556 4.90769 4.96803 5.00954 5.10696 5.12825 5.15266 5.23858 5.29427 5.31739 5.39432 5.47085 5.49866 5.58597 5.67926 5.74532 5.88864 6.42474 6.55665 6.79814 6.94263 7.55783 9.06017 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.007069 C = 0.006070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.415945 B = 3959.756301 C = 4612.051829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.087 4.087 4 H 0.071 0.929 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.116 4.116 8 C 0.085 3.915 9 H 0.035 0.965 10 N -0.671 5.671 11 C 0.127 3.873 12 C 0.023 3.977 13 C -0.476 4.476 14 H 0.047 0.953 15 C 0.021 3.979 16 N -0.914 5.914 17 Si 0.944 3.056 18 H -0.281 1.281 19 H -0.270 1.270 20 H -0.287 1.287 21 C -0.188 4.188 22 C -0.162 4.162 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.336 0.664 35 H 0.035 0.965 36 H 0.003 0.997 37 H 0.255 0.745 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.072 -5.278 -7.940 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.106 4.106 4 H 0.089 0.911 5 C -0.147 4.147 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.025 4.025 9 H 0.053 0.947 10 N -0.301 5.301 11 C -0.003 4.003 12 C 0.022 3.978 13 C -0.514 4.514 14 H 0.065 0.935 15 C -0.178 4.178 16 N -0.553 5.553 17 Si 0.771 3.229 18 H -0.207 1.207 19 H -0.195 1.195 20 H -0.213 1.213 21 C -0.225 4.225 22 C -0.200 4.200 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.154 0.846 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.705 -4.596 -8.109 15.757 hybrid contribution 0.741 0.121 0.320 0.816 sum -11.964 -4.475 -7.789 14.961 Atomic orbital electron populations 1.21761 0.94463 1.01981 1.02209 1.21605 0.96970 0.95122 1.01527 1.21885 0.92916 0.96888 0.98868 0.91058 1.22134 0.96866 1.00416 0.95247 1.22306 0.94961 1.01724 0.96494 1.22466 0.98045 0.98633 0.96297 1.22478 0.95420 0.95895 0.88696 0.94730 1.60281 1.02665 1.63625 1.03560 1.21162 0.89381 0.92965 0.96765 1.18968 0.98307 0.91606 0.88914 1.20520 0.98887 0.92459 1.39566 0.93523 1.25570 0.95388 1.01455 0.95355 1.70128 1.03000 1.36135 1.46079 0.85781 0.76843 0.82016 0.78286 1.20701 1.19518 1.21276 1.22965 0.97006 1.02262 1.00299 1.22388 0.91556 1.01192 1.04877 0.91778 0.92127 0.92948 0.91722 0.93153 0.91472 0.89979 0.91028 0.91119 0.92784 0.94183 0.84568 0.94606 0.97869 0.93593 0.90700 0.89374 0.91346 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.74 71.98 0.70 -1.78 16 2 C -0.11 -2.40 5.06 30.59 0.15 -2.25 16 3 C -0.09 -2.17 2.41 -10.07 -0.02 -2.19 16 4 H 0.07 1.93 7.99 -2.39 -0.02 1.92 16 5 C -0.11 -2.32 5.96 31.32 0.19 -2.13 16 6 C -0.12 -2.82 6.83 31.67 0.22 -2.60 16 7 C -0.12 -3.85 6.44 31.88 0.21 -3.65 16 8 C 0.08 2.75 2.69 45.99 0.12 2.87 16 9 H 0.03 1.14 7.63 -2.39 -0.02 1.12 16 10 N -0.67 -26.23 6.15 -486.04 -2.99 -29.22 16 11 C 0.13 5.76 5.34 86.30 0.46 6.22 16 12 C 0.02 1.13 1.63 -52.93 -0.09 1.04 16 13 C -0.48 -26.63 8.72 25.60 0.22 -26.41 16 14 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 15 C 0.02 1.18 5.43 84.65 0.46 1.64 16 16 N -0.91 -53.81 12.66 21.45 0.27 -53.54 16 17 Si 0.94 45.30 29.54 68.60 2.03 47.33 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 21 C -0.19 -8.11 9.96 30.62 0.30 -7.80 16 22 C -0.16 -7.84 9.16 30.62 0.28 -7.56 16 23 H 0.06 0.96 7.00 -2.39 -0.02 0.95 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.43 6.87 -2.39 -0.02 1.41 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.34 12.17 8.48 -89.70 -0.76 11.41 16 35 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 36 H 0.00 0.14 8.10 -2.38 -0.02 0.12 16 37 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 38 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -60.41 325.13 2.72 -57.70 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.21 Total: 22.34 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 3.21 Total: -44.61 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.72 Total: -82.76 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -60.41 2.72 -57.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389907019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.591 kcal (2) G-P(sol) polarization free energy of solvation -60.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds