Wall clock time and date at job start Sun Mar 29 2020 22:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47759 * 2 1 4 4 N 1.46900 * 110.01766 * 295.27209 * 3 2 1 5 5 C 1.46901 * 110.99845 * 305.15802 * 4 3 2 6 6 C 1.53001 * 109.47050 * 185.56881 * 5 4 3 7 7 C 1.50696 * 115.55103 * 304.97348 * 6 5 4 8 8 H 1.08000 * 120.00153 * 99.25091 * 7 6 5 9 9 C 1.37886 * 120.00092 * 279.25569 * 7 6 5 10 10 N 1.31518 * 119.99507 * 8.72524 * 9 7 6 11 11 Si 1.86799 * 120.00048 * 188.73557 * 9 7 6 12 12 H 1.48498 * 109.46986 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47095 * 299.99453 * 11 9 7 14 14 H 1.48499 * 109.47160 * 59.99617 * 11 9 7 15 15 C 1.53002 * 117.51667 * 90.67130 * 6 5 4 16 16 C 1.53001 * 59.99994 * 107.48113 * 15 6 5 17 17 C 1.53881 * 110.02690 * 56.65913 * 3 2 1 18 18 C 1.54379 * 106.54104 * 119.34982 * 17 3 2 19 19 C 1.54894 * 104.21651 * 23.57466 * 18 17 3 20 20 C 1.54260 * 110.03392 * 173.87599 * 3 2 1 21 21 H 1.09000 * 109.47131 * 52.86863 * 1 2 3 22 22 H 1.08999 * 109.47618 * 172.87622 * 1 2 3 23 23 H 1.09000 * 109.46699 * 292.87580 * 1 2 3 24 24 H 1.09009 * 109.46666 * 239.99926 * 2 1 3 25 25 H 1.08998 * 109.46993 * 120.00893 * 2 1 3 26 26 H 1.00902 * 111.00021 * 69.10824 * 4 3 2 27 27 H 1.09008 * 109.46839 * 65.57285 * 5 4 3 28 28 H 1.08996 * 109.47418 * 305.57313 * 5 4 3 29 29 H 0.97005 * 119.99538 * 174.93672 * 10 9 7 30 30 H 1.08998 * 117.49602 * 214.96794 * 15 6 5 31 31 H 1.09002 * 117.49718 * 359.97438 * 15 6 5 32 32 H 1.08995 * 117.50017 * 252.51463 * 16 15 6 33 33 H 1.08994 * 117.50123 * 107.48474 * 16 15 6 34 34 H 1.09001 * 110.03352 * 238.61768 * 17 3 2 35 35 H 1.08997 * 110.03611 * 0.05282 * 17 3 2 36 36 H 1.08997 * 110.46396 * 264.89450 * 18 17 3 37 37 H 1.08999 * 110.59815 * 142.31894 * 18 17 3 38 38 H 1.08993 * 110.75024 * 203.76142 * 19 18 17 39 39 H 1.08997 * 110.75193 * 80.38744 * 19 18 17 40 40 H 1.08991 * 110.49004 * 335.73829 * 20 3 2 41 41 H 1.09002 * 110.48648 * 98.38517 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.6523 2.1130 -1.2482 5 6 2.1130 1.3541 -2.4186 6 6 1.8144 2.1488 -3.6915 7 6 0.3777 2.5645 -3.8762 8 1 0.0685 3.5672 -3.6207 9 6 -0.5421 1.6646 -4.3714 10 7 -0.2108 0.4006 -4.5208 11 14 -2.2588 2.2407 -4.8304 12 1 -3.0491 1.0891 -5.3346 13 1 -2.9255 2.8129 -3.6332 14 1 -2.1662 3.2783 -5.8888 15 6 2.8969 3.1036 -4.1990 16 6 2.6157 1.7989 -4.9470 17 6 1.4667 2.2042 1.2078 18 6 2.6748 2.6594 2.0542 19 6 3.8524 2.6942 1.0486 20 6 3.5749 1.4602 0.1546 21 1 -0.3633 0.6203 -0.8193 22 1 -0.3634 -1.0197 -0.1274 23 1 -0.3633 0.3995 0.9469 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5140 0.8899 26 1 0.6550 2.2622 -1.2837 27 1 1.5938 0.3964 -2.4580 28 1 3.1865 1.1825 -2.3408 29 1 -0.8781 -0.2461 -4.7991 30 1 2.5698 4.0323 -4.6665 31 1 3.8219 3.1660 -3.6257 32 1 3.3557 1.0028 -4.8661 33 1 2.1036 1.8692 -5.9066 34 1 0.9007 3.0715 0.8678 35 1 0.8258 1.5461 1.7944 36 1 2.8742 1.9423 2.8504 37 1 2.4994 3.6514 2.4706 38 1 4.8057 2.5895 1.5664 39 1 3.8301 3.6110 0.4594 40 1 3.9196 0.5493 0.6440 41 1 4.0548 1.5774 -0.8170 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394633733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:09 Heat of formation + Delta-G solvation = 5.432270 kcal Electronic energy + Delta-G solvation = -18159.638745 eV Core-core repulsion = 15653.223532 eV Total energy + Delta-G solvation = -2506.415213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.07988 -36.40484 -33.55662 -31.90404 -30.98447 -28.39072 -26.86586 -25.37726 -23.94802 -22.42212 -20.95853 -20.21262 -18.88599 -18.06261 -15.98451 -15.63269 -14.94303 -14.62225 -14.38351 -13.93947 -13.67027 -12.97514 -12.86081 -12.58266 -12.26642 -11.83737 -11.42360 -11.35215 -10.95113 -10.93944 -10.78234 -10.77066 -10.52290 -10.48000 -10.30875 -10.25005 -10.17739 -10.08020 -9.91511 -9.32724 -8.68251 -8.39882 -8.00148 -7.23890 -5.98774 -4.02916 3.30973 3.36550 3.39893 4.42478 4.87187 4.95113 5.04376 5.28052 5.34471 5.52863 5.57162 5.65872 5.69695 5.80747 5.96775 5.98739 6.07768 6.12280 6.22261 6.24884 6.29008 6.36908 6.42606 6.48673 6.55332 6.61551 6.67711 6.68774 6.74393 6.80459 6.89503 6.96702 7.09506 7.22222 7.55577 7.63649 7.92742 8.23603 8.51433 8.57272 8.99222 9.61035 11.08671 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.008480 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.727685 B = 3301.189230 C = 3803.754622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.112 3.888 4 N -0.663 5.663 5 C 0.102 3.898 6 C 0.057 3.943 7 C -0.489 4.489 8 H 0.059 0.941 9 C 0.071 3.929 10 N -0.879 5.879 11 Si 0.884 3.116 12 H -0.289 1.289 13 H -0.277 1.277 14 H -0.278 1.278 15 C -0.203 4.203 16 C -0.171 4.171 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.112 4.112 21 H 0.066 0.934 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.348 0.652 27 H 0.042 0.958 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 0.387 10.254 11.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C 0.020 3.980 4 N -0.295 5.295 5 C -0.027 4.027 6 C 0.057 3.943 7 C -0.527 4.527 8 H 0.077 0.923 9 C -0.132 4.132 10 N -0.516 5.516 11 Si 0.712 3.288 12 H -0.215 1.215 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.241 4.241 16 C -0.210 4.210 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.150 4.150 21 H 0.085 0.915 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.169 0.831 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.775 0.640 10.118 11.206 hybrid contribution -1.606 -0.657 -0.408 1.783 sum 3.169 -0.017 9.709 10.213 Atomic orbital electron populations 1.21789 0.95910 1.01547 1.01679 1.22251 0.96430 0.98582 1.01487 1.21536 0.94198 0.90977 0.91307 1.60699 1.21100 1.48092 0.99623 1.21446 0.96121 0.95618 0.89468 1.18748 0.91110 0.95034 0.89442 1.20398 0.91678 0.98038 1.42611 0.92304 1.24975 0.98121 0.94980 0.95100 1.69978 1.33661 1.01164 1.46748 0.86790 0.84679 0.78184 0.79112 1.21510 1.20295 1.20330 1.22872 1.00880 0.94068 1.06233 1.22569 1.03414 0.96290 0.98683 1.22314 0.97430 0.99993 0.95587 1.22306 0.95742 1.00239 0.97487 1.22393 0.96870 0.99165 0.96978 1.22437 0.95422 0.97079 1.00054 0.91524 0.93469 0.93307 0.91450 0.93004 0.83101 0.93972 0.94640 0.93161 0.90994 0.91851 0.92268 0.90568 0.91047 0.92069 0.92541 0.92313 0.92764 0.91070 0.92545 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.38 37.16 0.35 -2.14 16 2 C -0.15 -2.41 4.43 -26.73 -0.12 -2.53 16 3 C 0.11 1.82 0.57 -130.48 -0.07 1.75 16 4 N -0.66 -13.03 5.83 -98.83 -0.58 -13.60 16 5 C 0.10 2.25 4.73 -3.82 -0.02 2.23 16 6 C 0.06 1.40 1.55 -155.66 -0.24 1.15 16 7 C -0.49 -12.95 7.94 -34.44 -0.27 -13.22 16 8 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 9 C 0.07 1.90 5.41 -17.81 -0.10 1.80 16 10 N -0.88 -24.25 13.14 55.43 0.73 -23.52 16 11 Si 0.88 20.86 29.55 -169.99 -5.02 15.84 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.20 -4.57 9.92 -26.73 -0.27 -4.84 16 16 C -0.17 -4.09 9.78 -26.73 -0.26 -4.35 16 17 C -0.12 -1.66 5.69 -25.55 -0.15 -1.81 16 18 C -0.12 -1.51 6.83 -25.01 -0.17 -1.68 16 19 C -0.12 -1.57 6.91 -24.73 -0.17 -1.74 16 20 C -0.11 -1.70 5.83 -25.07 -0.15 -1.85 16 21 H 0.07 1.28 6.72 -51.93 -0.35 0.93 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.70 6.53 -51.93 -0.34 0.36 16 24 H 0.07 1.23 6.25 -51.92 -0.32 0.90 16 25 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 26 H 0.35 7.39 6.51 -39.29 -0.26 7.13 16 27 H 0.04 1.03 6.47 -51.92 -0.34 0.69 16 28 H 0.04 0.75 6.15 -51.93 -0.32 0.44 16 29 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 30 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 34 H 0.07 1.09 7.85 -51.93 -0.41 0.69 16 35 H 0.06 0.82 6.13 -51.93 -0.32 0.51 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.79 7.79 -51.93 -0.40 0.38 16 41 H 0.07 1.21 6.15 -51.93 -0.32 0.89 16 LS Contribution 312.82 15.07 4.71 4.71 Total: -1.00 -26.37 312.82 -8.93 -35.31 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.14 Total: 8.48 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -1.63 Total: -27.22 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.15 Total: -37.12 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.37 -8.93 -35.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394633733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.739 kcal (2) G-P(sol) polarization free energy of solvation -26.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds