Wall clock time and date at job start Sun Mar 29 2020 22:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47759 * 2 1 4 4 N 1.46900 * 110.01766 * 295.27209 * 3 2 1 5 5 C 1.46901 * 110.99845 * 305.15802 * 4 3 2 6 6 C 1.53001 * 109.47050 * 185.56881 * 5 4 3 7 7 C 1.50696 * 115.55103 * 304.97348 * 6 5 4 8 8 H 1.08000 * 120.00153 * 99.25091 * 7 6 5 9 9 C 1.37886 * 120.00092 * 279.25569 * 7 6 5 10 10 N 1.31518 * 119.99507 * 8.72524 * 9 7 6 11 11 Si 1.86799 * 120.00048 * 188.73557 * 9 7 6 12 12 H 1.48498 * 109.46986 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47095 * 299.99453 * 11 9 7 14 14 H 1.48499 * 109.47160 * 59.99617 * 11 9 7 15 15 C 1.53002 * 117.51667 * 90.67130 * 6 5 4 16 16 C 1.53001 * 59.99994 * 107.48113 * 15 6 5 17 17 C 1.53881 * 110.02690 * 56.65913 * 3 2 1 18 18 C 1.54379 * 106.54104 * 119.34982 * 17 3 2 19 19 C 1.54894 * 104.21651 * 23.57466 * 18 17 3 20 20 C 1.54260 * 110.03392 * 173.87599 * 3 2 1 21 21 H 1.09000 * 109.47131 * 52.86863 * 1 2 3 22 22 H 1.08999 * 109.47618 * 172.87622 * 1 2 3 23 23 H 1.09000 * 109.46699 * 292.87580 * 1 2 3 24 24 H 1.09009 * 109.46666 * 239.99926 * 2 1 3 25 25 H 1.08998 * 109.46993 * 120.00893 * 2 1 3 26 26 H 1.00902 * 111.00021 * 69.10824 * 4 3 2 27 27 H 1.09008 * 109.46839 * 65.57285 * 5 4 3 28 28 H 1.08996 * 109.47418 * 305.57313 * 5 4 3 29 29 H 0.97005 * 119.99538 * 174.93672 * 10 9 7 30 30 H 1.08998 * 117.49602 * 214.96794 * 15 6 5 31 31 H 1.09002 * 117.49718 * 359.97438 * 15 6 5 32 32 H 1.08995 * 117.50017 * 252.51463 * 16 15 6 33 33 H 1.08994 * 117.50123 * 107.48474 * 16 15 6 34 34 H 1.09001 * 110.03352 * 238.61768 * 17 3 2 35 35 H 1.08997 * 110.03611 * 0.05282 * 17 3 2 36 36 H 1.08997 * 110.46396 * 264.89450 * 18 17 3 37 37 H 1.08999 * 110.59815 * 142.31894 * 18 17 3 38 38 H 1.08993 * 110.75024 * 203.76142 * 19 18 17 39 39 H 1.08997 * 110.75193 * 80.38744 * 19 18 17 40 40 H 1.08991 * 110.49004 * 335.73829 * 20 3 2 41 41 H 1.09002 * 110.48648 * 98.38517 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.6523 2.1130 -1.2482 5 6 2.1130 1.3541 -2.4186 6 6 1.8144 2.1488 -3.6915 7 6 0.3777 2.5645 -3.8762 8 1 0.0685 3.5672 -3.6207 9 6 -0.5421 1.6646 -4.3714 10 7 -0.2108 0.4006 -4.5208 11 14 -2.2588 2.2407 -4.8304 12 1 -3.0491 1.0891 -5.3346 13 1 -2.9255 2.8129 -3.6332 14 1 -2.1662 3.2783 -5.8888 15 6 2.8969 3.1036 -4.1990 16 6 2.6157 1.7989 -4.9470 17 6 1.4667 2.2042 1.2078 18 6 2.6748 2.6594 2.0542 19 6 3.8524 2.6942 1.0486 20 6 3.5749 1.4602 0.1546 21 1 -0.3633 0.6203 -0.8193 22 1 -0.3634 -1.0197 -0.1274 23 1 -0.3633 0.3995 0.9469 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5140 0.8899 26 1 0.6550 2.2622 -1.2837 27 1 1.5938 0.3964 -2.4580 28 1 3.1865 1.1825 -2.3408 29 1 -0.8781 -0.2461 -4.7991 30 1 2.5698 4.0323 -4.6665 31 1 3.8219 3.1660 -3.6257 32 1 3.3557 1.0028 -4.8661 33 1 2.1036 1.8692 -5.9066 34 1 0.9007 3.0715 0.8678 35 1 0.8258 1.5461 1.7944 36 1 2.8742 1.9423 2.8504 37 1 2.4994 3.6514 2.4706 38 1 4.8057 2.5895 1.5664 39 1 3.8301 3.6110 0.4594 40 1 3.9196 0.5493 0.6440 41 1 4.0548 1.5774 -0.8170 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394633733.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:09 Heat of formation + Delta-G solvation = -7.865745 kcal Electronic energy + Delta-G solvation = -18160.215390 eV Core-core repulsion = 15653.223532 eV Total energy + Delta-G solvation = -2506.991858 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41418 -38.20308 -34.86171 -33.96141 -32.46384 -29.54932 -28.28872 -27.33754 -25.54932 -23.69084 -22.84910 -21.45354 -20.67734 -19.39004 -17.85353 -17.03349 -16.60361 -16.16441 -15.90514 -15.72260 -14.96774 -14.50361 -14.30988 -14.04389 -13.66561 -13.47023 -13.13388 -12.91726 -12.81881 -12.72828 -12.35618 -12.11684 -12.03841 -11.88524 -11.70829 -11.63776 -11.51866 -11.29326 -11.23786 -11.14566 -10.64899 -10.38265 -9.88684 -8.86042 -8.04536 -6.13505 1.41192 1.43813 1.49635 2.44405 3.22177 3.40458 3.73561 3.74651 3.90245 4.13171 4.31220 4.38325 4.41980 4.46376 4.63007 4.68263 4.77344 4.80546 4.85206 4.88851 4.92595 5.03930 5.04608 5.10503 5.13810 5.15800 5.21361 5.27100 5.30394 5.33110 5.44061 5.47818 5.50903 5.64442 5.65623 5.75205 5.87614 6.49926 6.66567 6.83591 6.95999 7.52458 9.01716 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024583 B = 0.008480 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.727685 B = 3301.189230 C = 3803.754622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.106 3.894 4 N -0.663 5.663 5 C 0.122 3.878 6 C 0.034 3.966 7 C -0.497 4.497 8 H 0.049 0.951 9 C 0.031 3.969 10 N -0.903 5.903 11 Si 0.940 3.060 12 H -0.289 1.289 13 H -0.270 1.270 14 H -0.278 1.278 15 C -0.183 4.183 16 C -0.177 4.177 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.113 4.113 20 C -0.112 4.112 21 H 0.032 0.968 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.336 0.664 27 H 0.013 0.987 28 H 0.041 0.959 29 H 0.257 0.743 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.731 0.792 12.174 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C 0.014 3.986 4 N -0.294 5.294 5 C -0.008 4.008 6 C 0.033 3.967 7 C -0.535 4.535 8 H 0.067 0.933 9 C -0.169 4.169 10 N -0.541 5.541 11 Si 0.766 3.234 12 H -0.215 1.215 13 H -0.195 1.195 14 H -0.204 1.204 15 C -0.220 4.220 16 C -0.216 4.216 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.150 4.150 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.090 0.910 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.156 0.844 27 H 0.031 0.969 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.207 1.056 12.048 13.167 hybrid contribution -1.711 -0.778 -1.003 2.130 sum 3.496 0.279 11.045 11.588 Atomic orbital electron populations 1.21728 0.96133 1.01034 1.01462 1.22201 0.96170 0.98542 1.01344 1.21738 0.95360 0.90998 0.90461 1.60705 1.20091 1.48274 1.00306 1.21123 0.95957 0.94041 0.89631 1.18940 0.90775 0.96466 0.90529 1.20556 0.93031 0.97524 1.42408 0.93309 1.25552 1.01236 0.95021 0.95128 1.70086 1.34499 1.01889 1.47583 0.85907 0.81059 0.77571 0.78833 1.21463 1.19532 1.20380 1.22848 1.00859 0.93210 1.05108 1.22498 1.03714 0.97668 0.97681 1.22296 0.98369 0.99456 0.95000 1.22295 0.94030 1.01444 0.97290 1.22370 0.98478 0.97407 0.96810 1.22444 0.94087 0.98830 0.99653 0.94933 0.93339 0.90998 0.94075 0.90488 0.84425 0.96905 0.94034 0.93429 0.91099 0.89874 0.91306 0.92596 0.92339 0.90809 0.90581 0.91168 0.90565 0.92633 0.90934 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.38 71.98 0.68 -4.04 16 2 C -0.14 -4.52 4.43 30.59 0.14 -4.38 16 3 C 0.11 3.32 0.57 4.25 0.00 3.32 16 4 N -0.66 -26.13 5.83 -466.59 -2.72 -28.85 16 5 C 0.12 5.45 4.73 86.30 0.41 5.86 16 6 C 0.03 1.65 1.55 -52.93 -0.08 1.57 16 7 C -0.50 -26.72 7.94 25.60 0.20 -26.51 16 8 H 0.05 2.66 7.83 -2.91 -0.02 2.64 16 9 C 0.03 1.68 5.41 84.66 0.46 2.14 16 10 N -0.90 -50.88 13.14 21.45 0.28 -50.60 16 11 Si 0.94 43.27 29.55 68.60 2.03 45.30 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 C -0.18 -8.14 9.92 30.60 0.30 -7.84 16 16 C -0.18 -8.54 9.78 30.60 0.30 -8.24 16 17 C -0.11 -3.01 5.69 31.36 0.18 -2.83 16 18 C -0.11 -2.46 6.83 31.71 0.22 -2.24 16 19 C -0.11 -2.74 6.91 31.89 0.22 -2.51 16 20 C -0.11 -3.19 5.83 31.67 0.18 -3.01 16 21 H 0.03 1.26 6.72 -2.39 -0.02 1.24 16 22 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.07 1.94 6.53 -2.39 -0.02 1.92 16 24 H 0.04 1.51 6.25 -2.38 -0.01 1.49 16 25 H 0.08 2.03 8.05 -2.39 -0.02 2.01 16 26 H 0.34 14.57 6.51 -89.69 -0.58 13.98 16 27 H 0.01 0.65 6.47 -2.38 -0.02 0.63 16 28 H 0.04 1.78 6.15 -2.39 -0.01 1.76 16 29 H 0.26 14.03 8.32 -92.70 -0.77 13.25 16 30 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.06 1.71 7.85 -2.39 -0.02 1.69 16 35 H 0.07 1.76 6.13 -2.39 -0.01 1.75 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.82 7.79 -2.39 -0.02 1.80 16 41 H 0.05 1.67 6.15 -2.39 -0.01 1.65 16 Total: -1.00 -56.45 312.82 3.20 -53.25 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.41 Total: 29.61 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 3.20 Total: -48.71 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.44 Total: -79.45 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -56.45 3.20 -53.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394633733.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.385 kcal (2) G-P(sol) polarization free energy of solvation -56.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds