Wall clock time and date at job start Sun Mar 29 2020 22:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47112 * 2 1 4 4 H 1.08990 * 109.47622 * 305.64761 * 3 2 1 5 5 C 1.50699 * 109.46963 * 185.64505 * 3 2 1 6 6 H 1.08006 * 120.00109 * 240.00260 * 5 3 2 7 7 C 1.37876 * 120.00144 * 60.00052 * 5 3 2 8 8 N 1.31520 * 119.99890 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00178 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47115 * 90.00478 * 9 7 5 11 11 H 1.48503 * 109.46879 * 210.00176 * 9 7 5 12 12 H 1.48501 * 109.47026 * 330.00143 * 9 7 5 13 13 N 1.46899 * 109.46911 * 65.65034 * 3 2 1 14 14 C 1.46903 * 110.99821 * 205.11992 * 13 3 2 15 15 H 1.09009 * 110.07362 * 324.93354 * 14 13 3 16 16 C 1.54470 * 110.14568 * 86.51198 * 14 13 3 17 17 C 1.54953 * 104.22990 * 142.74471 * 16 14 13 18 18 C 1.55061 * 102.85762 * 322.45405 * 17 16 14 19 19 C 1.53173 * 110.09323 * 203.39456 * 14 13 3 20 20 C 1.53012 * 115.37607 * 10.40457 * 19 14 13 21 21 C 1.53922 * 86.85670 * 92.14897 * 20 19 14 22 22 C 1.53031 * 115.34258 * 110.71769 * 19 14 13 23 23 H 1.09005 * 109.46967 * 293.89176 * 1 2 3 24 24 H 1.08999 * 109.47451 * 53.88777 * 1 2 3 25 25 H 1.08995 * 109.47721 * 173.89799 * 1 2 3 26 26 H 1.08999 * 109.46916 * 239.99920 * 2 1 3 27 27 H 1.09002 * 109.46921 * 120.00258 * 2 1 3 28 28 H 0.96991 * 120.00183 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00243 * 329.06781 * 13 3 2 30 30 H 1.09004 * 110.47776 * 261.43054 * 16 14 13 31 31 H 1.08995 * 110.47528 * 24.05847 * 16 14 13 32 32 H 1.09000 * 110.73214 * 80.78910 * 17 16 14 33 33 H 1.08994 * 110.73608 * 203.92773 * 17 16 14 34 34 H 1.09011 * 110.52619 * 278.67647 * 18 17 16 35 35 H 1.09003 * 110.52895 * 155.93131 * 18 17 16 36 36 H 1.09001 * 113.65289 * 337.65900 * 20 19 14 37 37 H 1.09002 * 113.73369 * 206.65205 * 20 19 14 38 38 H 1.08999 * 113.59157 * 139.44635 * 21 20 19 39 39 H 1.09001 * 113.59032 * 270.27574 * 21 20 19 40 40 H 1.09002 * 113.65248 * 153.32913 * 22 19 14 41 41 H 1.08994 * 113.65026 * 22.30689 * 22 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8350 5 6 3.5405 1.4447 -0.1398 6 1 4.1541 1.8864 0.6316 7 6 4.1301 0.8830 -1.2523 8 7 3.3830 0.3456 -2.1919 9 14 5.9900 0.8864 -1.4259 10 1 6.5465 -0.3473 -0.8149 11 1 6.3527 0.9330 -2.8652 12 1 6.5494 2.0764 -0.7357 13 7 1.6648 2.0944 1.2618 14 6 1.5814 3.5518 1.0968 15 1 2.3395 3.8925 0.3915 16 6 0.1750 3.9511 0.5984 17 6 -0.1268 5.2808 1.3346 18 6 0.4928 5.0471 2.7367 19 6 1.7710 4.2461 2.4490 20 6 2.2422 3.3421 3.5900 21 6 3.6768 3.7423 3.2014 22 6 3.0767 5.0286 2.6061 23 1 -0.3633 0.4162 0.9397 24 1 -0.3634 0.6057 -0.8302 25 1 -0.3634 -1.0218 -0.1092 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7977 -0.0499 -2.9744 29 1 0.7979 1.7207 1.6181 30 1 0.1825 4.1058 -0.4806 31 1 -0.5563 3.1901 0.8704 32 1 0.3583 6.1182 0.8331 33 1 -1.2016 5.4464 1.4072 34 1 -0.1870 4.4699 3.3636 35 1 0.7363 5.9982 3.2104 36 1 2.0242 2.2862 3.4298 37 1 1.9434 3.6912 4.5784 38 1 4.3272 3.9201 4.0578 39 1 4.1264 3.0854 2.4568 40 1 3.0106 5.8508 3.3187 41 1 3.5267 5.3231 1.6581 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394730662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:26 Heat of formation + Delta-G solvation = 2.496722 kcal Electronic energy + Delta-G solvation = -18270.514187 eV Core-core repulsion = 15763.971679 eV Total energy + Delta-G solvation = -2506.542508 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.81857 -35.91116 -34.31559 -32.01659 -30.67262 -27.25089 -26.59018 -25.30731 -24.73062 -22.64150 -20.83858 -20.41357 -19.51022 -17.44248 -16.17647 -15.27907 -15.19756 -14.68396 -14.33545 -13.74805 -13.44828 -12.83966 -12.69499 -12.54436 -12.28373 -11.95784 -11.66277 -11.38785 -11.25557 -10.95464 -10.78815 -10.70785 -10.57986 -10.46859 -10.19897 -9.96869 -9.87748 -9.62052 -9.48326 -9.43163 -9.36148 -8.97872 -8.30456 -7.07724 -5.92574 -3.96114 3.34304 3.40898 3.44658 4.47767 4.90579 4.95547 5.03139 5.34638 5.41913 5.47495 5.49084 5.64831 5.72876 5.97073 5.99390 6.04969 6.14715 6.18156 6.19543 6.21306 6.24133 6.33392 6.36890 6.43844 6.45707 6.55380 6.64464 6.82147 6.87261 6.95431 7.00525 7.14363 7.19791 7.25461 7.60133 7.83278 7.98841 8.40843 8.46403 8.84439 9.12839 9.68764 11.12631 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.009207 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.664940 B = 3040.448117 C = 3710.378167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.673 5.673 14 C 0.115 3.885 15 H 0.083 0.917 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.073 4.073 20 C -0.121 4.121 21 C -0.132 4.132 22 C -0.131 4.131 23 H 0.034 0.966 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.039 0.961 28 H 0.258 0.742 29 H 0.316 0.684 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.297 6.836 7.751 11.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.303 5.303 14 C 0.004 3.996 15 H 0.101 0.899 16 C -0.191 4.191 17 C -0.159 4.159 18 C -0.148 4.148 19 C -0.074 4.074 20 C -0.159 4.159 21 C -0.169 4.169 22 C -0.168 4.168 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.610 6.732 7.797 11.286 hybrid contribution 0.126 0.074 -0.772 0.786 sum -4.484 6.806 7.025 10.760 Atomic orbital electron populations 1.21877 0.99721 0.99567 0.99463 1.21763 0.91121 1.00593 1.02928 1.19143 0.95251 0.89778 0.84623 0.98126 1.21231 0.91357 1.36077 1.03990 0.92041 1.24951 0.97823 0.95851 0.95969 1.69873 1.34518 1.39735 1.09597 0.86607 0.86177 0.78360 0.76893 1.20867 1.21553 1.20003 1.60742 1.35762 1.01619 1.32159 1.21718 0.94554 0.89667 0.93649 0.89856 1.23179 0.98960 0.96974 0.99942 1.22430 0.99395 0.97796 0.96322 1.22282 0.96897 0.99088 0.96550 1.21893 0.92953 0.96003 0.96531 1.22658 0.96070 1.01761 0.95387 1.22781 0.96410 0.97478 1.00275 1.22911 0.96876 0.96552 1.00500 0.94669 0.93966 0.94561 0.88397 0.94173 0.93212 0.86576 0.92156 0.92165 0.91967 0.92589 0.92035 0.92426 0.89167 0.92426 0.93374 0.88758 0.91401 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.63 37.16 0.36 -2.51 16 2 C -0.13 -2.92 5.36 -26.73 -0.14 -3.06 16 3 C 0.22 5.28 1.87 -68.87 -0.13 5.15 16 4 H 0.00 0.03 7.73 -51.93 -0.40 -0.37 16 5 C -0.49 -13.11 8.52 -34.44 -0.29 -13.40 16 6 H 0.06 1.68 7.00 -52.48 -0.37 1.31 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.40 11.29 55.43 0.63 -24.78 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.67 -13.56 4.18 -100.05 -0.42 -13.98 16 14 C 0.12 2.12 2.56 -66.85 -0.17 1.95 16 15 H 0.08 1.78 7.28 -51.92 -0.38 1.40 16 16 C -0.15 -2.46 6.33 -24.93 -0.16 -2.62 16 17 C -0.12 -1.66 6.91 -24.61 -0.17 -1.83 16 18 C -0.11 -1.50 6.20 -25.35 -0.16 -1.66 16 19 C -0.07 -1.15 1.12 -154.11 -0.17 -1.32 16 20 C -0.12 -1.91 7.02 -26.24 -0.18 -2.09 16 21 C -0.13 -2.17 7.92 -25.78 -0.20 -2.38 16 22 C -0.13 -2.01 7.28 -26.23 -0.19 -2.20 16 23 H 0.03 0.61 6.67 -51.93 -0.35 0.26 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 29 H 0.32 5.99 5.97 -39.29 -0.23 5.76 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.97 7.59 -51.93 -0.39 0.58 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.81 8.11 -51.92 -0.42 0.39 16 35 H 0.06 0.71 7.80 -51.93 -0.41 0.31 16 36 H 0.09 1.57 6.63 -51.93 -0.34 1.23 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.84 7.33 -51.93 -0.38 1.46 16 40 H 0.07 0.92 7.94 -51.93 -0.41 0.50 16 41 H 0.06 1.01 7.86 -51.93 -0.41 0.60 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -26.71 309.64 -9.18 -35.88 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.32 Total: 6.32 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -1.71 Total: -24.58 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.21 Total: -38.76 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.71 -9.18 -35.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394730662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.378 kcal (2) G-P(sol) polarization free energy of solvation -26.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds