Wall clock time and date at job start Sun Mar 29 2020 22:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47112 * 2 1 4 4 H 1.08990 * 109.47622 * 305.64761 * 3 2 1 5 5 C 1.50699 * 109.46963 * 185.64505 * 3 2 1 6 6 H 1.08006 * 120.00109 * 240.00260 * 5 3 2 7 7 C 1.37876 * 120.00144 * 60.00052 * 5 3 2 8 8 N 1.31520 * 119.99890 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00178 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47115 * 90.00478 * 9 7 5 11 11 H 1.48503 * 109.46879 * 210.00176 * 9 7 5 12 12 H 1.48501 * 109.47026 * 330.00143 * 9 7 5 13 13 N 1.46899 * 109.46911 * 65.65034 * 3 2 1 14 14 C 1.46903 * 110.99821 * 205.11992 * 13 3 2 15 15 H 1.09009 * 110.07362 * 324.93354 * 14 13 3 16 16 C 1.54470 * 110.14568 * 86.51198 * 14 13 3 17 17 C 1.54953 * 104.22990 * 142.74471 * 16 14 13 18 18 C 1.55061 * 102.85762 * 322.45405 * 17 16 14 19 19 C 1.53173 * 110.09323 * 203.39456 * 14 13 3 20 20 C 1.53012 * 115.37607 * 10.40457 * 19 14 13 21 21 C 1.53922 * 86.85670 * 92.14897 * 20 19 14 22 22 C 1.53031 * 115.34258 * 110.71769 * 19 14 13 23 23 H 1.09005 * 109.46967 * 293.89176 * 1 2 3 24 24 H 1.08999 * 109.47451 * 53.88777 * 1 2 3 25 25 H 1.08995 * 109.47721 * 173.89799 * 1 2 3 26 26 H 1.08999 * 109.46916 * 239.99920 * 2 1 3 27 27 H 1.09002 * 109.46921 * 120.00258 * 2 1 3 28 28 H 0.96991 * 120.00183 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00243 * 329.06781 * 13 3 2 30 30 H 1.09004 * 110.47776 * 261.43054 * 16 14 13 31 31 H 1.08995 * 110.47528 * 24.05847 * 16 14 13 32 32 H 1.09000 * 110.73214 * 80.78910 * 17 16 14 33 33 H 1.08994 * 110.73608 * 203.92773 * 17 16 14 34 34 H 1.09011 * 110.52619 * 278.67647 * 18 17 16 35 35 H 1.09003 * 110.52895 * 155.93131 * 18 17 16 36 36 H 1.09001 * 113.65289 * 337.65900 * 20 19 14 37 37 H 1.09002 * 113.73369 * 206.65205 * 20 19 14 38 38 H 1.08999 * 113.59157 * 139.44635 * 21 20 19 39 39 H 1.09001 * 113.59032 * 270.27574 * 21 20 19 40 40 H 1.09002 * 113.65248 * 153.32913 * 22 19 14 41 41 H 1.08994 * 113.65026 * 22.30689 * 22 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8350 5 6 3.5405 1.4447 -0.1398 6 1 4.1541 1.8864 0.6316 7 6 4.1301 0.8830 -1.2523 8 7 3.3830 0.3456 -2.1919 9 14 5.9900 0.8864 -1.4259 10 1 6.5465 -0.3473 -0.8149 11 1 6.3527 0.9330 -2.8652 12 1 6.5494 2.0764 -0.7357 13 7 1.6648 2.0944 1.2618 14 6 1.5814 3.5518 1.0968 15 1 2.3395 3.8925 0.3915 16 6 0.1750 3.9511 0.5984 17 6 -0.1268 5.2808 1.3346 18 6 0.4928 5.0471 2.7367 19 6 1.7710 4.2461 2.4490 20 6 2.2422 3.3421 3.5900 21 6 3.6768 3.7423 3.2014 22 6 3.0767 5.0286 2.6061 23 1 -0.3633 0.4162 0.9397 24 1 -0.3634 0.6057 -0.8302 25 1 -0.3634 -1.0218 -0.1092 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7977 -0.0499 -2.9744 29 1 0.7979 1.7207 1.6181 30 1 0.1825 4.1058 -0.4806 31 1 -0.5563 3.1901 0.8704 32 1 0.3583 6.1182 0.8331 33 1 -1.2016 5.4464 1.4072 34 1 -0.1870 4.4699 3.3636 35 1 0.7363 5.9982 3.2104 36 1 2.0242 2.2862 3.4298 37 1 1.9434 3.6912 4.5784 38 1 4.3272 3.9201 4.0578 39 1 4.1264 3.0854 2.4568 40 1 3.0106 5.8508 3.3187 41 1 3.5267 5.3231 1.6581 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394730662.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:26 Heat of formation + Delta-G solvation = -10.905760 kcal Electronic energy + Delta-G solvation = -18271.095362 eV Core-core repulsion = 15763.971679 eV Total energy + Delta-G solvation = -2507.123683 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.14802 -37.64804 -35.69375 -33.99560 -32.29999 -28.91143 -28.05477 -26.68213 -26.23047 -24.45137 -22.21825 -21.63495 -21.37921 -18.79077 -18.26210 -16.93398 -16.56400 -16.27554 -15.83293 -15.39925 -15.00095 -14.56129 -14.05626 -14.00502 -13.70217 -13.46431 -13.18880 -13.02734 -12.81815 -12.72852 -12.49578 -12.38299 -11.95173 -11.93038 -11.73111 -11.56766 -11.51877 -11.34282 -11.00341 -10.89166 -10.73227 -10.64834 -10.40068 -8.80561 -8.04231 -6.15002 1.38530 1.39637 1.49357 2.43579 3.20392 3.55676 3.68420 3.81126 4.04333 4.20997 4.23667 4.38837 4.42702 4.52061 4.58532 4.67164 4.70587 4.76087 4.85693 4.91392 4.98259 5.03746 5.09396 5.12423 5.16788 5.22132 5.26458 5.32904 5.33681 5.41576 5.47732 5.63385 5.65902 5.71570 5.81671 5.91305 5.97004 6.42430 6.62346 7.01312 7.10777 7.53897 8.98381 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022048 B = 0.009207 C = 0.007545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.664940 B = 3040.448117 C = 3710.378167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.229 3.771 4 H -0.035 1.035 5 C -0.501 4.501 6 H 0.049 0.951 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.668 5.668 14 C 0.112 3.888 15 H 0.040 0.960 16 C -0.149 4.149 17 C -0.114 4.114 18 C -0.102 4.102 19 C -0.074 4.074 20 C -0.113 4.113 21 C -0.138 4.138 22 C -0.125 4.125 23 H 0.058 0.942 24 H 0.034 0.966 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.035 0.965 28 H 0.258 0.742 29 H 0.326 0.674 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 8.006 9.795 14.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.121 3.879 4 H -0.018 1.018 5 C -0.539 4.539 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.298 5.298 14 C 0.001 3.999 15 H 0.059 0.941 16 C -0.189 4.189 17 C -0.152 4.152 18 C -0.139 4.139 19 C -0.074 4.074 20 C -0.151 4.151 21 C -0.176 4.176 22 C -0.162 4.162 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.145 0.855 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.627 7.911 9.853 13.832 hybrid contribution 0.466 -0.286 -1.419 1.520 sum -5.162 7.624 8.434 12.486 Atomic orbital electron populations 1.21730 0.96372 1.00898 1.00409 1.21585 0.94131 0.99271 1.00979 1.18856 0.93635 0.90322 0.85085 1.01779 1.21493 0.93012 1.35706 1.03732 0.93266 1.25635 1.01749 0.95746 0.95826 1.70003 1.35920 1.40350 1.09906 0.85704 0.81566 0.78368 0.76864 1.20288 1.21132 1.19853 1.60656 1.36411 1.02815 1.29907 1.21709 0.94765 0.88525 0.94891 0.94128 1.23102 0.97510 0.99084 0.99184 1.22411 1.00986 0.95797 0.95970 1.22256 0.95346 0.99797 0.96531 1.21824 0.94709 0.96225 0.94671 1.22636 0.95134 1.00628 0.96696 1.22696 0.97327 0.97569 0.99967 1.22934 0.96167 0.96836 1.00279 0.92315 0.94706 0.92662 0.91708 0.94612 0.93299 0.85544 0.94029 0.91655 0.91810 0.90248 0.90794 0.90181 0.91143 0.89465 0.91472 0.92988 0.88264 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.63 71.98 0.69 -4.47 16 2 C -0.12 -5.75 5.36 30.59 0.16 -5.59 16 3 C 0.23 11.50 1.87 44.17 0.08 11.58 16 4 H -0.04 -2.00 7.73 -2.39 -0.02 -2.02 16 5 C -0.50 -28.10 8.52 25.60 0.22 -27.89 16 6 H 0.05 2.83 7.00 -2.91 -0.02 2.81 16 7 C 0.01 0.45 5.29 84.65 0.45 0.90 16 8 N -0.92 -53.94 11.29 21.45 0.24 -53.70 16 9 Si 0.95 45.28 29.54 68.60 2.03 47.30 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.67 -27.44 4.18 -470.46 -1.97 -29.41 16 14 C 0.11 4.17 2.56 45.47 0.12 4.29 16 15 H 0.04 1.84 7.28 -2.38 -0.02 1.83 16 16 C -0.15 -4.79 6.33 31.76 0.20 -4.59 16 17 C -0.11 -2.79 6.91 31.97 0.22 -2.57 16 18 C -0.10 -2.36 6.20 31.49 0.20 -2.17 16 19 C -0.07 -2.19 1.12 -51.92 -0.06 -2.25 16 20 C -0.11 -3.34 7.02 30.91 0.22 -3.12 16 21 C -0.14 -4.45 7.92 31.21 0.25 -4.20 16 22 C -0.12 -3.64 7.28 30.92 0.23 -3.42 16 23 H 0.06 1.92 6.67 -2.38 -0.02 1.91 16 24 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 3.53 5.94 -2.39 -0.01 3.52 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.33 12.17 5.97 -89.69 -0.54 11.64 16 30 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.06 2.01 7.59 -2.39 -0.02 1.99 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.58 8.11 -2.38 -0.02 1.56 16 35 H 0.08 1.57 7.80 -2.39 -0.02 1.55 16 36 H 0.07 2.37 6.63 -2.39 -0.02 2.36 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 2.11 7.33 -2.39 -0.02 2.09 16 40 H 0.10 2.30 7.94 -2.39 -0.02 2.29 16 41 H 0.04 1.41 7.86 -2.39 -0.02 1.39 16 Total: -1.00 -60.12 309.64 3.72 -56.40 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.45 Total: 22.87 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 2.97 Total: -43.48 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -1.72 Total: -83.10 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -60.12 3.72 -56.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394730662.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.498 kcal (2) G-P(sol) polarization free energy of solvation -60.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds