Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00544 * 2 1 4 4 C 1.52999 * 109.47038 * 287.94497 * 3 2 1 5 5 C 1.50698 * 115.54916 * 305.20227 * 4 3 2 6 6 H 1.07997 * 120.00249 * 88.96229 * 5 4 3 7 7 C 1.37878 * 120.00012 * 268.68714 * 5 4 3 8 8 N 1.31519 * 119.99907 * 356.03966 * 7 5 4 9 9 Si 1.86801 * 120.00244 * 176.03907 * 7 5 4 10 10 H 1.48500 * 109.47171 * 89.99986 * 9 7 5 11 11 H 1.48501 * 109.47062 * 210.00146 * 9 7 5 12 12 H 1.48498 * 109.46999 * 330.00041 * 9 7 5 13 13 C 1.52999 * 117.49935 * 90.87083 * 4 3 2 14 14 C 1.52994 * 117.50069 * 159.53312 * 4 3 2 15 15 C 1.46905 * 110.99601 * 123.95604 * 2 1 3 16 16 C 1.53778 * 113.61553 * 153.54262 * 15 2 1 17 17 C 1.53783 * 87.08279 * 220.01618 * 16 15 2 18 18 C 1.52997 * 113.61359 * 270.88341 * 17 16 15 19 19 C 1.52993 * 113.61388 * 139.97957 * 17 16 15 20 20 C 1.53778 * 113.61625 * 56.04559 * 15 2 1 21 21 H 1.08999 * 109.46530 * 65.70107 * 1 2 3 22 22 H 1.08994 * 109.47485 * 185.69723 * 1 2 3 23 23 H 1.08997 * 109.46738 * 305.70592 * 1 2 3 24 24 H 1.08992 * 109.47181 * 167.93930 * 3 2 1 25 25 H 1.08999 * 109.46741 * 47.93790 * 3 2 1 26 26 H 0.96996 * 119.99792 * 185.00669 * 8 7 5 27 27 H 1.09000 * 117.49928 * 215.00458 * 13 4 3 28 28 H 1.08998 * 117.50014 * 0.02562 * 13 4 3 29 29 H 1.09007 * 117.49605 * 359.97162 * 14 4 3 30 30 H 1.08998 * 117.50294 * 144.97252 * 14 4 3 31 31 H 1.09007 * 112.84521 * 284.84473 * 15 2 1 32 32 H 1.09003 * 113.61207 * 334.56602 * 16 15 2 33 33 H 1.09001 * 113.61365 * 105.46378 * 16 15 2 34 34 H 1.08999 * 109.46947 * 157.49539 * 18 17 16 35 35 H 1.08999 * 109.47014 * 277.49806 * 18 17 16 36 36 H 1.09007 * 109.47467 * 37.49487 * 18 17 16 37 37 H 1.08999 * 109.47707 * 322.50370 * 19 17 16 38 38 H 1.09007 * 109.47353 * 82.50110 * 19 17 16 39 39 H 1.09001 * 109.47312 * 202.50079 * 19 17 16 40 40 H 1.09007 * 113.61131 * 254.53096 * 20 15 2 41 41 H 1.08993 * 113.61336 * 25.43060 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.7635 2.0068 -1.3723 5 6 2.3116 1.2368 -2.5461 6 1 1.7035 0.4884 -3.0324 7 6 3.5873 1.4918 -3.0028 8 7 4.2970 2.4597 -2.4650 9 14 4.3076 0.4627 -4.3854 10 1 3.9821 1.0907 -5.6912 11 1 5.7821 0.3843 -4.2276 12 1 3.7311 -0.9049 -4.3365 13 6 0.4601 2.7803 -1.5814 14 6 1.7865 3.5342 -1.4566 15 6 1.9954 -0.7661 1.1376 16 6 3.3938 -1.3556 0.8891 17 6 2.9042 -2.6193 1.6159 18 6 3.1303 -2.5827 3.1287 19 6 3.3857 -3.9214 0.9731 20 6 1.4814 -2.2142 1.1958 21 1 -0.3632 0.4229 -0.9366 22 1 -0.3634 -1.0225 0.1020 23 1 -0.3633 0.5998 0.8345 24 1 3.0640 1.3503 0.2147 25 1 1.4831 1.9573 0.7630 26 1 5.1650 2.6869 -2.8335 27 1 -0.0010 2.7323 -2.5679 28 1 -0.2319 2.8369 -0.7411 29 1 1.9665 4.0865 -0.5342 30 1 2.1983 3.9823 -2.3609 31 1 1.9067 -0.2328 2.0842 32 1 3.6183 -1.5175 -0.1652 33 1 4.1895 -0.8292 1.4164 34 1 2.4392 -3.2702 3.6161 35 1 4.1554 -2.8801 3.3501 36 1 2.9577 -1.5716 3.4976 37 1 3.3853 -3.8131 -0.1115 38 1 4.3965 -4.1436 1.3155 39 1 2.7187 -4.7353 1.2572 40 1 0.7331 -2.3812 1.9707 41 1 1.1831 -2.6109 0.2254 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395500187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = 40.843837 kcal Electronic energy + Delta-G solvation = -17904.331166 eV Core-core repulsion = 15399.451513 eV Total energy + Delta-G solvation = -2504.879652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.58201 -36.93006 -34.26552 -31.69684 -29.55831 -27.31380 -27.16116 -25.40829 -24.79034 -23.53760 -20.93243 -20.05041 -18.88513 -17.89562 -15.89468 -15.34786 -14.80563 -14.50415 -14.21227 -13.77488 -13.67814 -13.14438 -12.83072 -12.69986 -12.46094 -12.29350 -11.61039 -11.45582 -11.43594 -11.12372 -11.01614 -10.84548 -10.63574 -10.44188 -10.34828 -10.31030 -10.01674 -9.91196 -9.64813 -9.18213 -8.78253 -8.22034 -7.91831 -7.34846 -5.83977 -3.87092 3.38436 3.45470 3.50661 4.53987 4.68987 4.73563 4.94695 5.13172 5.20349 5.40848 5.49418 5.57861 5.70833 5.73123 5.84674 5.94556 5.99543 6.00226 6.08741 6.14084 6.15418 6.26685 6.31308 6.35151 6.38906 6.51974 6.56365 6.61650 6.69756 6.76574 6.85011 6.92067 7.05685 7.25744 7.59419 7.70601 7.98514 8.06934 8.13821 8.66927 9.11860 9.75000 11.23544 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.008707 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.878447 B = 3214.914457 C = 4004.856064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.504 5.504 3 C 0.105 3.895 4 C 0.050 3.950 5 C -0.458 4.458 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.885 3.115 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.273 1.273 13 C -0.219 4.219 14 C -0.149 4.149 15 C 0.056 3.944 16 C -0.110 4.110 17 C -0.096 4.096 18 C -0.125 4.125 19 C -0.131 4.131 20 C -0.119 4.119 21 H 0.073 0.927 22 H 0.053 0.947 23 H 0.007 0.993 24 H 0.069 0.931 25 H -0.001 1.001 26 H 0.255 0.745 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 -7.956 8.539 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.227 5.227 3 C -0.023 4.023 4 C 0.050 3.950 5 C -0.496 4.496 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.528 5.528 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.198 1.198 13 C -0.257 4.257 14 C -0.187 4.187 15 C -0.053 4.053 16 C -0.148 4.148 17 C -0.096 4.096 18 C -0.182 4.182 19 C -0.189 4.189 20 C -0.157 4.157 21 H 0.092 0.908 22 H 0.072 0.928 23 H 0.025 0.975 24 H 0.087 0.913 25 H 0.017 0.983 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.139 -8.144 8.140 11.934 hybrid contribution 0.191 0.076 0.021 0.207 sum -2.948 -8.068 8.161 11.848 Atomic orbital electron populations 1.22308 0.88909 0.99791 1.00603 1.62055 1.06242 1.15161 1.39274 1.21685 0.98688 0.85945 0.95934 1.18809 0.93299 0.89832 0.93097 1.20260 0.97911 1.19313 1.12105 0.92437 1.24926 0.96836 0.95291 0.96498 1.70011 1.12668 1.29488 1.40591 0.86700 0.78238 0.81283 0.82415 1.21142 1.21512 1.19813 1.23081 0.91690 1.11202 0.99680 1.22461 0.98365 0.97240 1.00599 1.23029 0.96791 0.93034 0.92417 1.23066 0.95832 0.94478 1.01449 1.21715 0.97278 0.95552 0.95064 1.21576 1.01143 1.01520 0.93993 1.21686 1.00250 0.96130 1.00788 1.23098 0.95279 0.95965 1.01308 0.90810 0.92846 0.97484 0.91289 0.98306 0.93471 0.90746 0.92437 0.92595 0.89412 0.93263 0.88636 0.92389 0.92887 0.92684 0.92646 0.92198 0.93060 0.93154 0.92561 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.08 60.07 0.55 1.12 16 2 N -0.50 -10.13 4.37 -233.91 -1.02 -11.15 16 3 C 0.10 2.37 4.85 -3.82 -0.02 2.35 16 4 C 0.05 1.25 1.34 -155.67 -0.21 1.04 16 5 C -0.46 -12.52 8.56 -34.44 -0.29 -12.82 16 6 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 7 C 0.07 1.81 5.42 -17.82 -0.10 1.71 16 8 N -0.89 -25.43 12.13 55.43 0.67 -24.76 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C -0.22 -4.91 8.57 -26.69 -0.23 -5.14 16 14 C -0.15 -3.61 8.94 -26.70 -0.24 -3.85 16 15 C 0.06 0.96 2.81 -66.90 -0.19 0.77 16 16 C -0.11 -1.85 6.74 -25.92 -0.17 -2.03 16 17 C -0.10 -1.29 1.39 -153.70 -0.21 -1.50 16 18 C -0.13 -1.45 9.07 37.16 0.34 -1.12 16 19 C -0.13 -1.62 9.19 37.15 0.34 -1.28 16 20 C -0.12 -1.71 5.58 -25.92 -0.14 -1.86 16 21 H 0.07 1.42 6.70 -51.93 -0.35 1.07 16 22 H 0.05 0.84 6.74 -51.93 -0.35 0.49 16 23 H 0.01 0.12 8.00 -51.93 -0.42 -0.30 16 24 H 0.07 1.70 7.81 -51.93 -0.41 1.29 16 25 H 0.00 -0.02 7.90 -51.93 -0.41 -0.43 16 26 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 27 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.09 2.31 7.82 -51.93 -0.41 1.90 16 31 H 0.05 0.83 7.65 -51.93 -0.40 0.43 16 32 H 0.10 1.84 7.96 -51.93 -0.41 1.42 16 33 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.66 7.34 -51.93 -0.38 0.28 16 37 H 0.06 0.80 7.94 -51.93 -0.41 0.38 16 38 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.09 1.36 7.89 -51.93 -0.41 0.95 16 LS Contribution 321.99 15.07 4.85 4.85 Total: -1.00 -27.97 321.99 -8.80 -36.76 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.69 Total: 0.27 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -0.58 Total: -22.59 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.35 Total: -35.91 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.97 -8.80 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395500187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.609 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds