Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00544 * 2 1 4 4 C 1.52999 * 109.47038 * 287.94497 * 3 2 1 5 5 C 1.50698 * 115.54916 * 305.20227 * 4 3 2 6 6 H 1.07997 * 120.00249 * 88.96229 * 5 4 3 7 7 C 1.37878 * 120.00012 * 268.68714 * 5 4 3 8 8 N 1.31519 * 119.99907 * 356.03966 * 7 5 4 9 9 Si 1.86801 * 120.00244 * 176.03907 * 7 5 4 10 10 H 1.48500 * 109.47171 * 89.99986 * 9 7 5 11 11 H 1.48501 * 109.47062 * 210.00146 * 9 7 5 12 12 H 1.48498 * 109.46999 * 330.00041 * 9 7 5 13 13 C 1.52999 * 117.49935 * 90.87083 * 4 3 2 14 14 C 1.52994 * 117.50069 * 159.53312 * 4 3 2 15 15 C 1.46905 * 110.99601 * 123.95604 * 2 1 3 16 16 C 1.53778 * 113.61553 * 153.54262 * 15 2 1 17 17 C 1.53783 * 87.08279 * 220.01618 * 16 15 2 18 18 C 1.52997 * 113.61359 * 270.88341 * 17 16 15 19 19 C 1.52993 * 113.61388 * 139.97957 * 17 16 15 20 20 C 1.53778 * 113.61625 * 56.04559 * 15 2 1 21 21 H 1.08999 * 109.46530 * 65.70107 * 1 2 3 22 22 H 1.08994 * 109.47485 * 185.69723 * 1 2 3 23 23 H 1.08997 * 109.46738 * 305.70592 * 1 2 3 24 24 H 1.08992 * 109.47181 * 167.93930 * 3 2 1 25 25 H 1.08999 * 109.46741 * 47.93790 * 3 2 1 26 26 H 0.96996 * 119.99792 * 185.00669 * 8 7 5 27 27 H 1.09000 * 117.49928 * 215.00458 * 13 4 3 28 28 H 1.08998 * 117.50014 * 0.02562 * 13 4 3 29 29 H 1.09007 * 117.49605 * 359.97162 * 14 4 3 30 30 H 1.08998 * 117.50294 * 144.97252 * 14 4 3 31 31 H 1.09007 * 112.84521 * 284.84473 * 15 2 1 32 32 H 1.09003 * 113.61207 * 334.56602 * 16 15 2 33 33 H 1.09001 * 113.61365 * 105.46378 * 16 15 2 34 34 H 1.08999 * 109.46947 * 157.49539 * 18 17 16 35 35 H 1.08999 * 109.47014 * 277.49806 * 18 17 16 36 36 H 1.09007 * 109.47467 * 37.49487 * 18 17 16 37 37 H 1.08999 * 109.47707 * 322.50370 * 19 17 16 38 38 H 1.09007 * 109.47353 * 82.50110 * 19 17 16 39 39 H 1.09001 * 109.47312 * 202.50079 * 19 17 16 40 40 H 1.09007 * 113.61131 * 254.53096 * 20 15 2 41 41 H 1.08993 * 113.61336 * 25.43060 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.7635 2.0068 -1.3723 5 6 2.3116 1.2368 -2.5461 6 1 1.7035 0.4884 -3.0324 7 6 3.5873 1.4918 -3.0028 8 7 4.2970 2.4597 -2.4650 9 14 4.3076 0.4627 -4.3854 10 1 3.9821 1.0907 -5.6912 11 1 5.7821 0.3843 -4.2276 12 1 3.7311 -0.9049 -4.3365 13 6 0.4601 2.7803 -1.5814 14 6 1.7865 3.5342 -1.4566 15 6 1.9954 -0.7661 1.1376 16 6 3.3938 -1.3556 0.8891 17 6 2.9042 -2.6193 1.6159 18 6 3.1303 -2.5827 3.1287 19 6 3.3857 -3.9214 0.9731 20 6 1.4814 -2.2142 1.1958 21 1 -0.3632 0.4229 -0.9366 22 1 -0.3634 -1.0225 0.1020 23 1 -0.3633 0.5998 0.8345 24 1 3.0640 1.3503 0.2147 25 1 1.4831 1.9573 0.7630 26 1 5.1650 2.6869 -2.8335 27 1 -0.0010 2.7323 -2.5679 28 1 -0.2319 2.8369 -0.7411 29 1 1.9665 4.0865 -0.5342 30 1 2.1983 3.9823 -2.3609 31 1 1.9067 -0.2328 2.0842 32 1 3.6183 -1.5175 -0.1652 33 1 4.1895 -0.8292 1.4164 34 1 2.4392 -3.2702 3.6161 35 1 4.1554 -2.8801 3.3501 36 1 2.9577 -1.5716 3.4976 37 1 3.3853 -3.8131 -0.1115 38 1 4.3965 -4.1436 1.3155 39 1 2.7187 -4.7353 1.2572 40 1 0.7331 -2.3812 1.9707 41 1 1.1831 -2.6109 0.2254 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395500187.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = 26.392858 kcal Electronic energy + Delta-G solvation = -17904.957807 eV Core-core repulsion = 15399.451513 eV Total energy + Delta-G solvation = -2505.506294 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85898 -38.69778 -35.83966 -33.80775 -30.73872 -28.78132 -28.23539 -27.39781 -26.18551 -25.06114 -22.82030 -21.41902 -20.83904 -19.08363 -17.89269 -16.76895 -16.56315 -16.06916 -15.84412 -15.24166 -15.12666 -14.48182 -14.35691 -14.06961 -13.73374 -13.56912 -13.30980 -13.02631 -12.82926 -12.64766 -12.61759 -12.46740 -12.36585 -12.26444 -11.95901 -11.66127 -11.54223 -11.37276 -10.88459 -10.84912 -10.80353 -10.25763 -9.84124 -8.88829 -7.97357 -6.05050 1.41194 1.43898 1.53493 2.49184 3.19245 3.29084 3.59233 3.65713 3.78215 3.94417 3.99088 4.35158 4.40939 4.47026 4.52282 4.64981 4.70447 4.73093 4.79882 4.84042 4.86975 4.94027 4.99785 5.00068 5.02958 5.07894 5.08067 5.20913 5.23715 5.26834 5.30872 5.33632 5.58798 5.68177 5.71917 5.78511 5.90591 6.38329 6.58515 6.63556 6.97823 7.59128 9.09316 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.008707 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.878447 B = 3214.914457 C = 4004.856064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.525 5.525 3 C 0.120 3.880 4 C 0.027 3.973 5 C -0.465 4.465 6 H 0.045 0.955 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.940 3.060 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.272 1.272 13 C -0.190 4.190 14 C -0.157 4.157 15 C 0.050 3.950 16 C -0.121 4.121 17 C -0.082 4.082 18 C -0.122 4.122 19 C -0.130 4.130 20 C -0.108 4.108 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.018 0.982 24 H 0.037 0.963 25 H 0.008 0.992 26 H 0.254 0.746 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 -9.519 9.773 14.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.248 5.248 3 C -0.008 4.008 4 C 0.027 3.973 5 C -0.503 4.503 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.555 5.555 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.196 1.196 13 C -0.228 4.228 14 C -0.196 4.196 15 C -0.058 4.058 16 C -0.159 4.159 17 C -0.082 4.082 18 C -0.179 4.179 19 C -0.187 4.187 20 C -0.145 4.145 21 H 0.075 0.925 22 H 0.094 0.906 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.235 -9.715 9.372 14.147 hybrid contribution 0.513 0.572 -0.367 0.852 sum -3.722 -9.143 9.005 13.362 Atomic orbital electron populations 1.22284 0.87420 1.01355 1.00145 1.61967 1.07737 1.13751 1.41344 1.21345 0.97029 0.87651 0.94744 1.18926 0.95134 0.89778 0.93488 1.20442 0.97980 1.19055 1.12867 0.93675 1.25540 0.97272 0.96246 0.98707 1.70117 1.12826 1.30752 1.41768 0.85825 0.77381 0.79909 0.80136 1.20585 1.21447 1.19641 1.23022 0.90939 1.08248 1.00549 1.22349 1.00123 0.97214 0.99868 1.23162 0.97037 0.94093 0.91541 1.23050 0.95896 0.97034 0.99905 1.21697 0.95973 0.94337 0.96208 1.21571 1.02329 1.01881 0.92147 1.21674 1.01341 0.96060 0.99662 1.23025 0.96413 0.93462 1.01622 0.92458 0.90593 0.96308 0.94407 0.97376 0.93683 0.90948 0.89792 0.91582 0.92090 0.92670 0.91917 0.93140 0.90807 0.91846 0.93125 0.93860 0.92141 0.91138 0.90175 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 9.08 127.69 1.16 2.38 16 2 N -0.52 -20.80 4.37 -893.96 -3.90 -24.70 16 3 C 0.12 5.46 4.85 86.30 0.42 5.88 16 4 C 0.03 1.37 1.34 -52.93 -0.07 1.30 16 5 C -0.47 -25.85 8.56 25.60 0.22 -25.63 16 6 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 7 C 0.02 1.15 5.42 84.65 0.46 1.61 16 8 N -0.91 -53.58 12.13 21.45 0.26 -53.32 16 9 Si 0.94 45.17 29.54 68.60 2.03 47.20 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 13 C -0.19 -8.34 8.57 30.62 0.26 -8.08 16 14 C -0.16 -7.71 8.94 30.62 0.27 -7.43 16 15 C 0.05 1.65 2.81 45.44 0.13 1.78 16 16 C -0.12 -4.07 6.74 31.12 0.21 -3.86 16 17 C -0.08 -2.05 1.39 -51.66 -0.07 -2.12 16 18 C -0.12 -2.47 9.07 71.98 0.65 -1.82 16 19 C -0.13 -2.95 9.19 71.98 0.66 -2.29 16 20 C -0.11 -2.85 5.58 31.12 0.17 -2.67 16 21 H 0.06 2.11 6.70 -2.39 -0.02 2.10 16 22 H 0.08 2.20 6.74 -2.39 -0.02 2.18 16 23 H 0.02 0.59 8.00 -2.39 -0.02 0.57 16 24 H 0.04 1.91 7.81 -2.39 -0.02 1.89 16 25 H 0.01 0.35 7.90 -2.39 -0.02 0.33 16 26 H 0.25 14.36 8.32 -92.71 -0.77 13.59 16 27 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 28 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 30 H 0.06 3.29 7.82 -2.39 -0.02 3.27 16 31 H 0.06 1.77 7.65 -2.38 -0.02 1.76 16 32 H 0.06 2.51 7.96 -2.39 -0.02 2.49 16 33 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.08 7.34 -2.38 -0.02 1.06 16 37 H 0.04 1.11 7.94 -2.39 -0.02 1.09 16 38 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.76 8.10 -2.38 -0.02 1.74 16 41 H 0.08 2.27 7.89 -2.39 -0.02 2.25 16 Total: -1.00 -60.31 321.99 3.81 -56.50 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.95 Total: 15.27 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 4.48 Total: -40.95 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -3.64 Total: -78.02 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -60.31 3.81 -56.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395500187.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.895 kcal (2) G-P(sol) polarization free energy of solvation -60.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds