Wall clock time and date at job start Sun Mar 29 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47370 * 2 1 4 4 H 1.08998 * 109.47039 * 54.99610 * 3 2 1 5 5 C 1.50703 * 109.47101 * 174.99914 * 3 2 1 6 6 H 1.08002 * 119.99837 * 119.99440 * 5 3 2 7 7 C 1.37877 * 120.00198 * 299.99930 * 5 3 2 8 8 N 1.31520 * 119.99697 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00357 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46517 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47029 * 119.99710 * 9 7 5 12 12 H 1.48502 * 109.47156 * 240.00216 * 9 7 5 13 13 N 1.46897 * 109.46705 * 294.99726 * 3 2 1 14 14 C 1.46900 * 110.99970 * 85.00161 * 13 3 2 15 15 H 1.09000 * 115.56589 * 9.29124 * 14 13 3 16 16 C 1.53035 * 117.50509 * 223.58059 * 14 13 3 17 17 C 1.52808 * 117.50223 * 154.99330 * 14 13 3 18 18 C 1.53150 * 117.75176 * 359.85406 * 17 14 13 19 19 C 1.53181 * 108.98447 * 160.30869 * 18 17 14 20 20 C 1.53198 * 109.31392 * 56.50916 * 19 18 17 21 21 C 1.52947 * 109.88551 * 297.08819 * 20 19 18 22 22 C 1.53153 * 117.75202 * 215.10679 * 17 14 13 23 23 H 1.08998 * 109.47110 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46894 * 300.00518 * 1 2 3 25 25 H 1.09004 * 109.46626 * 60.00056 * 1 2 3 26 26 H 1.08994 * 109.47329 * 239.99634 * 2 1 3 27 27 H 1.09008 * 109.46991 * 120.00295 * 2 1 3 28 28 H 0.97001 * 120.00140 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00260 * 321.04366 * 13 3 2 30 30 H 1.09000 * 117.50544 * 145.04274 * 16 14 13 31 31 H 1.08999 * 117.52554 * 359.97438 * 16 14 13 32 32 H 1.09002 * 109.56885 * 280.19030 * 18 17 14 33 33 H 1.08994 * 109.56991 * 40.42928 * 18 17 14 34 34 H 1.08992 * 109.47745 * 176.61824 * 19 18 17 35 35 H 1.09003 * 109.47232 * 296.63584 * 19 18 17 36 36 H 1.08998 * 109.37391 * 176.96750 * 20 19 18 37 37 H 1.09003 * 109.33042 * 57.18457 * 20 19 18 38 38 H 1.08997 * 109.47517 * 302.99668 * 21 20 19 39 39 H 1.09003 * 109.47509 * 182.98897 * 21 20 19 40 40 H 1.09000 * 109.56629 * 319.45015 * 22 17 14 41 41 H 1.08997 * 109.56841 * 79.69559 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0050 0.8811 1.3819 10 1 6.5988 1.5461 0.1942 11 1 6.3990 1.6166 2.6103 12 1 6.4971 -0.5177 1.4631 13 7 1.6515 2.0992 -1.2553 14 6 0.2914 2.6467 -1.1639 15 1 -0.1551 2.6335 -0.1696 16 6 -0.6392 2.4308 -2.3594 17 6 -0.0609 3.8178 -2.0801 18 6 1.0278 4.3377 -3.0234 19 6 0.3686 5.1309 -4.1560 20 6 -0.4807 6.2571 -3.5583 21 6 -1.6093 5.6649 -2.7129 22 6 -1.0113 4.8883 -1.5358 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8292 -0.0613 2.9499 29 1 1.7344 1.4652 -2.0358 30 1 -1.6979 2.2756 -2.1517 31 1 -0.2424 1.8829 -3.2141 32 1 1.7093 4.9859 -2.4724 33 1 1.5814 3.4967 -3.4409 34 1 1.1396 5.5554 -4.7990 35 1 -0.2683 4.4676 -4.7413 36 1 -0.9069 6.8551 -4.3638 37 1 0.1481 6.8894 -2.9314 38 1 -2.2078 4.9914 -3.3263 39 1 -2.2404 6.4692 -2.3345 40 1 -1.8110 4.4121 -0.9686 41 1 -0.4604 5.5703 -0.8882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395657637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:11 Heat of formation + Delta-G solvation = -5.623844 kcal Electronic energy + Delta-G solvation = -17652.985523 eV Core-core repulsion = 15146.090881 eV Total energy + Delta-G solvation = -2506.894642 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.23452 -36.29951 -34.06273 -31.78068 -30.69487 -29.65658 -27.25642 -25.89866 -22.76745 -22.50503 -21.58652 -20.18358 -19.73857 -18.15228 -16.36165 -15.17579 -15.03470 -14.48055 -14.24552 -13.84461 -13.52899 -13.13687 -13.09617 -12.90054 -12.24382 -12.01205 -11.77281 -11.56661 -11.31382 -11.18307 -10.97241 -10.80788 -10.78667 -10.64141 -10.53126 -10.10017 -9.97397 -9.83566 -9.74942 -9.54761 -9.24056 -8.75531 -8.31873 -7.01610 -5.96731 -3.99857 3.32713 3.40582 3.45889 4.27645 4.45238 4.85342 4.96751 5.03722 5.22664 5.33736 5.38565 5.44543 5.56875 5.60739 5.75744 5.81701 5.82616 6.01284 6.12572 6.14583 6.15451 6.20394 6.22988 6.27015 6.38429 6.40345 6.47836 6.51473 6.57340 6.72307 6.86338 6.89725 7.00543 7.25904 7.45752 7.79326 7.92031 8.32481 8.56327 8.65218 9.08076 9.65233 11.09752 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030628 B = 0.006187 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.980596 B = 4524.753663 C = 5056.380846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.150 4.150 3 C 0.219 3.781 4 H 0.035 0.965 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.647 5.647 14 C 0.058 3.942 15 H 0.099 0.901 16 C -0.209 4.209 17 C -0.122 4.122 18 C -0.065 4.065 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.079 4.079 23 H 0.030 0.970 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.098 0.902 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.846 6.761 -8.934 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.189 4.189 3 C 0.112 3.888 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.275 5.275 14 C -0.054 4.054 15 H 0.117 0.883 16 C -0.248 4.248 17 C -0.124 4.124 18 C -0.103 4.103 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.117 4.117 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.475 7.256 -8.584 14.077 hybrid contribution 0.340 -0.978 0.148 1.046 sum -8.135 6.277 -8.436 13.295 Atomic orbital electron populations 1.22031 0.99436 0.99317 1.00465 1.22271 0.91791 1.02159 1.02708 1.19266 0.95289 0.88456 0.85814 0.94759 1.21210 0.91108 1.35856 1.05092 0.91942 1.24941 0.98173 0.95565 0.95830 1.69889 1.34663 1.39419 1.09661 0.86477 0.85729 0.77460 0.77943 1.19769 1.21177 1.21254 1.60470 1.18510 1.40834 1.07681 1.22593 0.90179 0.99101 0.93541 0.88343 1.23553 0.99081 1.00188 1.01942 1.21743 0.99033 0.89157 1.02478 1.20864 0.95634 0.99331 0.94475 1.21613 0.98710 0.97242 0.98005 1.21517 0.97328 0.97761 0.98836 1.21480 0.97418 0.98953 0.97228 1.21086 0.97268 0.96626 0.96711 0.95071 0.93980 0.93402 0.94970 0.88391 0.93157 0.85473 0.89981 0.89501 0.91673 0.91549 0.92622 0.92559 0.92902 0.92169 0.92318 0.92667 0.92446 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.85 37.16 0.33 -2.72 16 2 C -0.15 -3.49 5.24 -26.73 -0.14 -3.63 16 3 C 0.22 5.39 2.18 -68.86 -0.15 5.24 16 4 H 0.03 0.94 7.57 -51.93 -0.39 0.55 16 5 C -0.49 -13.55 8.84 -34.44 -0.30 -13.85 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.50 11.29 55.43 0.63 -24.88 16 9 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.65 -13.45 5.62 -101.04 -0.57 -14.02 16 14 C 0.06 1.03 3.81 -67.79 -0.26 0.77 16 15 H 0.10 1.88 7.10 -51.93 -0.37 1.51 16 16 C -0.21 -3.12 8.52 -26.79 -0.23 -3.35 16 17 C -0.12 -1.85 1.98 -154.53 -0.31 -2.16 16 18 C -0.07 -0.97 5.26 -26.56 -0.14 -1.11 16 19 C -0.12 -1.44 5.96 -26.54 -0.16 -1.60 16 20 C -0.12 -1.31 5.83 -26.66 -0.16 -1.47 16 21 C -0.11 -1.29 5.93 -26.67 -0.16 -1.45 16 22 C -0.08 -1.06 5.67 -26.56 -0.15 -1.21 16 23 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.83 8.13 -51.93 -0.42 0.41 16 25 H 0.05 0.86 4.98 -51.93 -0.26 0.60 16 26 H 0.03 0.73 8.04 -51.93 -0.42 0.32 16 27 H 0.10 2.60 5.95 -51.92 -0.31 2.29 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.33 6.56 8.20 -39.29 -0.32 6.24 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.05 7.76 -51.93 -0.40 0.65 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -27.17 312.59 -9.67 -36.84 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.51 Total: 5.97 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -1.91 Total: -25.10 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.06 Total: -38.90 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.17 -9.67 -36.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395657637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.219 kcal (2) G-P(sol) polarization free energy of solvation -27.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds