Wall clock time and date at job start Sun Mar 29 2020 22:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47370 * 2 1 4 4 H 1.08998 * 109.47039 * 54.99610 * 3 2 1 5 5 C 1.50703 * 109.47101 * 174.99914 * 3 2 1 6 6 H 1.08002 * 119.99837 * 119.99440 * 5 3 2 7 7 C 1.37877 * 120.00198 * 299.99930 * 5 3 2 8 8 N 1.31520 * 119.99697 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00357 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46517 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47029 * 119.99710 * 9 7 5 12 12 H 1.48502 * 109.47156 * 240.00216 * 9 7 5 13 13 N 1.46897 * 109.46705 * 294.99726 * 3 2 1 14 14 C 1.46900 * 110.99970 * 85.00161 * 13 3 2 15 15 H 1.09000 * 115.56589 * 9.29124 * 14 13 3 16 16 C 1.53035 * 117.50509 * 223.58059 * 14 13 3 17 17 C 1.52808 * 117.50223 * 154.99330 * 14 13 3 18 18 C 1.53150 * 117.75176 * 359.85406 * 17 14 13 19 19 C 1.53181 * 108.98447 * 160.30869 * 18 17 14 20 20 C 1.53198 * 109.31392 * 56.50916 * 19 18 17 21 21 C 1.52947 * 109.88551 * 297.08819 * 20 19 18 22 22 C 1.53153 * 117.75202 * 215.10679 * 17 14 13 23 23 H 1.08998 * 109.47110 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46894 * 300.00518 * 1 2 3 25 25 H 1.09004 * 109.46626 * 60.00056 * 1 2 3 26 26 H 1.08994 * 109.47329 * 239.99634 * 2 1 3 27 27 H 1.09008 * 109.46991 * 120.00295 * 2 1 3 28 28 H 0.97001 * 120.00140 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00260 * 321.04366 * 13 3 2 30 30 H 1.09000 * 117.50544 * 145.04274 * 16 14 13 31 31 H 1.08999 * 117.52554 * 359.97438 * 16 14 13 32 32 H 1.09002 * 109.56885 * 280.19030 * 18 17 14 33 33 H 1.08994 * 109.56991 * 40.42928 * 18 17 14 34 34 H 1.08992 * 109.47745 * 176.61824 * 19 18 17 35 35 H 1.09003 * 109.47232 * 296.63584 * 19 18 17 36 36 H 1.08998 * 109.37391 * 176.96750 * 20 19 18 37 37 H 1.09003 * 109.33042 * 57.18457 * 20 19 18 38 38 H 1.08997 * 109.47517 * 302.99668 * 21 20 19 39 39 H 1.09003 * 109.47509 * 182.98897 * 21 20 19 40 40 H 1.09000 * 109.56629 * 319.45015 * 22 17 14 41 41 H 1.08997 * 109.56841 * 79.69559 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4062 0.3365 2.1729 9 14 6.0050 0.8811 1.3819 10 1 6.5988 1.5461 0.1942 11 1 6.3990 1.6166 2.6103 12 1 6.4971 -0.5177 1.4631 13 7 1.6515 2.0992 -1.2553 14 6 0.2914 2.6467 -1.1639 15 1 -0.1551 2.6335 -0.1696 16 6 -0.6392 2.4308 -2.3594 17 6 -0.0609 3.8178 -2.0801 18 6 1.0278 4.3377 -3.0234 19 6 0.3686 5.1309 -4.1560 20 6 -0.4807 6.2571 -3.5583 21 6 -1.6093 5.6649 -2.7129 22 6 -1.0113 4.8883 -1.5358 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8292 -0.0613 2.9499 29 1 1.7344 1.4652 -2.0358 30 1 -1.6979 2.2756 -2.1517 31 1 -0.2424 1.8829 -3.2141 32 1 1.7093 4.9859 -2.4724 33 1 1.5814 3.4967 -3.4409 34 1 1.1396 5.5554 -4.7990 35 1 -0.2683 4.4676 -4.7413 36 1 -0.9069 6.8551 -4.3638 37 1 0.1481 6.8894 -2.9314 38 1 -2.2078 4.9914 -3.3263 39 1 -2.2404 6.4692 -2.3345 40 1 -1.8110 4.4121 -0.9686 41 1 -0.4604 5.5703 -0.8882 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395657637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:11 Heat of formation + Delta-G solvation = -19.809623 kcal Electronic energy + Delta-G solvation = -17653.600665 eV Core-core repulsion = 15146.090881 eV Total energy + Delta-G solvation = -2507.509784 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49651 -37.85909 -35.52487 -33.72859 -31.79684 -31.26217 -28.73444 -27.54886 -24.62851 -23.58211 -22.75838 -21.64870 -21.40357 -19.33365 -18.34717 -16.86546 -16.36491 -16.16137 -15.48824 -15.12988 -15.04518 -14.70584 -14.44885 -14.21203 -13.66931 -13.41872 -13.11870 -12.99809 -12.91438 -12.68234 -12.62447 -12.52659 -12.14271 -11.98837 -11.86570 -11.82076 -11.56280 -11.46738 -11.15261 -10.90106 -10.71115 -10.42564 -10.32612 -8.63076 -8.08265 -6.19197 1.40788 1.42700 1.54819 2.44032 2.98977 3.19135 3.52143 3.87537 3.97431 4.09444 4.19798 4.33511 4.38900 4.48665 4.55100 4.58168 4.60878 4.71728 4.72032 4.85023 4.88828 4.98593 5.04632 5.08148 5.13891 5.22136 5.25313 5.25740 5.37299 5.38601 5.41939 5.48048 5.58888 5.65442 5.69505 5.74783 5.89179 6.33717 6.70254 6.87877 6.98314 7.50601 8.96593 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030628 B = 0.006187 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.980596 B = 4524.753663 C = 5056.380846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.142 4.142 3 C 0.228 3.772 4 H -0.003 1.003 5 C -0.514 4.514 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.280 1.280 13 N -0.649 5.649 14 C 0.025 3.975 15 H 0.082 0.918 16 C -0.183 4.183 17 C -0.112 4.112 18 C -0.066 4.066 19 C -0.112 4.112 20 C -0.117 4.117 21 C -0.108 4.108 22 C -0.081 4.081 23 H 0.048 0.952 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.260 0.740 29 H 0.330 0.670 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 7.394 -10.572 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C 0.120 3.880 4 H 0.015 0.985 5 C -0.553 4.553 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.784 3.216 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.277 5.277 14 C -0.086 4.086 15 H 0.099 0.901 16 C -0.222 4.222 17 C -0.113 4.113 18 C -0.104 4.104 19 C -0.150 4.150 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.119 4.119 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.546 7.899 -10.235 16.071 hybrid contribution 0.653 -1.149 0.660 1.477 sum -8.893 6.750 -9.575 14.709 Atomic orbital electron populations 1.21887 0.96469 1.00623 1.00985 1.22079 0.94434 1.00737 1.00945 1.18950 0.93757 0.88998 0.86317 0.98465 1.21517 0.92782 1.35954 1.05063 0.92995 1.25684 1.02431 0.95217 0.95533 1.70020 1.36271 1.39844 1.09999 0.85507 0.80624 0.77620 0.77848 1.19441 1.20844 1.20563 1.60357 1.21056 1.40314 1.05980 1.22520 0.89530 1.02458 0.94120 0.90057 1.23558 0.99266 0.99540 0.99811 1.21846 0.99064 0.89557 1.00868 1.20848 0.95378 0.98916 0.95248 1.21569 0.99066 0.97369 0.96949 1.21531 0.97089 0.97441 0.99361 1.21458 0.97532 0.99279 0.96259 1.21133 0.96923 0.96155 0.97655 0.93271 0.94782 0.91538 0.94969 0.91721 0.93106 0.85201 0.88124 0.88864 0.93652 0.92889 0.91740 0.91788 0.90779 0.92798 0.91582 0.90991 0.91978 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.53 8.85 71.98 0.64 -4.90 16 2 C -0.14 -6.77 5.24 30.60 0.16 -6.61 16 3 C 0.23 11.63 2.18 44.17 0.10 11.73 16 4 H 0.00 -0.15 7.57 -2.39 -0.02 -0.17 16 5 C -0.51 -29.05 8.84 25.60 0.23 -28.82 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.52 5.29 84.65 0.45 0.97 16 8 N -0.92 -53.74 11.29 21.45 0.24 -53.50 16 9 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.65 -27.52 5.62 -473.58 -2.66 -30.18 16 14 C 0.03 0.89 3.81 44.86 0.17 1.06 16 15 H 0.08 3.18 7.10 -2.39 -0.02 3.16 16 16 C -0.18 -5.08 8.52 30.55 0.26 -4.82 16 17 C -0.11 -3.26 1.98 -52.20 -0.10 -3.36 16 18 C -0.07 -1.91 5.26 30.71 0.16 -1.75 16 19 C -0.11 -2.47 5.96 30.72 0.18 -2.29 16 20 C -0.12 -2.28 5.83 30.64 0.18 -2.10 16 21 C -0.11 -2.12 5.93 30.64 0.18 -1.93 16 22 C -0.08 -2.03 5.67 30.71 0.17 -1.86 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.03 1.35 8.13 -2.39 -0.02 1.33 16 25 H 0.07 2.31 4.98 -2.38 -0.01 2.30 16 26 H 0.03 1.49 8.04 -2.39 -0.02 1.47 16 27 H 0.06 3.53 5.95 -2.38 -0.01 3.52 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.64 16 29 H 0.33 13.31 8.20 -89.70 -0.74 12.57 16 30 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.09 2.51 8.09 -2.39 -0.02 2.49 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.65 7.76 -2.39 -0.02 1.63 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.49 8.09 -2.39 -0.02 1.47 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -59.50 312.59 2.62 -56.87 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.24 Total: 24.75 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 2.78 Total: -44.68 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -2.42 Total: -83.68 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -59.50 2.62 -56.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395657637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.061 kcal (2) G-P(sol) polarization free energy of solvation -59.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds