Wall clock time and date at job start Sun Mar 29 2020 22:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53007 * 109.47089 * 2 1 4 4 H 1.08999 * 109.46899 * 305.00211 * 3 2 1 5 5 C 1.50693 * 109.46730 * 184.99868 * 3 2 1 6 6 H 1.07998 * 120.00206 * 240.00077 * 5 3 2 7 7 C 1.37882 * 120.00136 * 60.00536 * 5 3 2 8 8 N 1.31506 * 119.99709 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00078 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47037 * 59.99618 * 9 7 5 11 11 H 1.48498 * 109.47266 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47015 * 300.00041 * 9 7 5 13 13 N 1.46898 * 109.46549 * 65.00240 * 3 2 1 14 14 C 1.46905 * 111.00296 * 274.99514 * 13 3 2 15 15 H 1.09007 * 115.54580 * 9.30288 * 14 13 3 16 16 C 1.53032 * 117.50535 * 223.61483 * 14 13 3 17 17 C 1.52843 * 59.98436 * 252.50470 * 16 14 13 18 18 C 1.53154 * 117.67594 * 252.26908 * 17 16 14 19 19 C 1.53181 * 108.88583 * 268.49801 * 18 17 16 20 20 C 1.52937 * 109.45407 * 303.44353 * 19 18 17 21 21 C 1.52948 * 109.82647 * 62.97768 * 20 19 18 22 22 C 1.53144 * 117.67984 * 107.76342 * 17 16 14 23 23 H 1.08993 * 109.46758 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47088 * 300.00021 * 1 2 3 25 25 H 1.09001 * 109.46912 * 59.99851 * 1 2 3 26 26 H 1.08994 * 109.46943 * 240.00493 * 2 1 3 27 27 H 1.08997 * 109.47285 * 120.00438 * 2 1 3 28 28 H 0.96997 * 119.99925 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00527 * 38.95499 * 13 3 2 30 30 H 1.09002 * 117.50529 * 359.97438 * 16 14 13 31 31 H 1.09002 * 117.50686 * 145.01623 * 16 14 13 32 32 H 1.08996 * 109.57274 * 28.32166 * 18 17 16 33 33 H 1.09005 * 109.56303 * 148.68181 * 18 17 16 34 34 H 1.08992 * 109.47430 * 183.44572 * 19 18 17 35 35 H 1.08999 * 109.47158 * 63.43429 * 19 18 17 36 36 H 1.09003 * 109.41234 * 302.87190 * 20 19 18 37 37 H 1.08999 * 109.35305 * 183.05234 * 20 19 18 38 38 H 1.08994 * 109.47573 * 177.01794 * 21 20 19 39 39 H 1.09007 * 109.47459 * 57.00991 * 21 20 19 40 40 H 1.08996 * 109.57122 * 211.30909 * 22 17 16 41 41 H 1.08999 * 109.57178 * 331.55214 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8784 -1.2280 8 7 3.4063 0.3368 -2.1729 9 14 6.0050 0.8812 -1.3818 10 1 6.5975 0.1472 -0.2349 11 1 6.3978 0.2178 -2.6509 12 1 6.4996 2.2814 -1.3820 13 7 1.6515 2.0992 1.2553 14 6 0.2914 2.6467 1.1639 15 1 -0.2728 2.3586 0.2768 16 6 0.0551 4.0500 1.7268 17 6 -0.4864 2.8279 2.4678 18 6 -1.9988 2.5885 2.4350 19 6 -2.6360 3.2755 3.6467 20 6 -1.9865 2.7524 4.9287 21 6 -0.5009 3.1157 4.9432 22 6 0.2049 2.4233 3.7731 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8935 -0.5139 0.8899 28 1 3.8293 -0.0610 -2.9498 29 1 1.7344 1.4652 2.0358 30 1 0.9088 4.5668 2.1653 31 1 -0.6644 4.6852 1.2101 32 1 -2.4147 3.0060 1.5181 33 1 -2.1998 1.5179 2.4748 34 1 -3.7042 3.0601 3.6665 35 1 -2.4836 4.3524 3.5756 36 1 -2.0948 1.6687 4.9736 37 1 -2.4777 3.2016 5.7918 38 1 -0.0555 2.7870 5.8821 39 1 -0.3899 4.1958 4.8468 40 1 0.1444 1.3423 3.8984 41 1 1.2506 2.7294 3.7425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395657641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:16 Heat of formation + Delta-G solvation = -4.730891 kcal Electronic energy + Delta-G solvation = -17736.351145 eV Core-core repulsion = 15229.495224 eV Total energy + Delta-G solvation = -2506.855921 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.31923 -36.23791 -34.10479 -31.80353 -30.82223 -29.62972 -27.16064 -26.15175 -22.89177 -22.65275 -21.40681 -20.02954 -19.70658 -18.23422 -16.39174 -15.31929 -15.17914 -14.50764 -14.23713 -13.92936 -13.41540 -13.25056 -13.04415 -12.99826 -12.32338 -12.09746 -11.82825 -11.58660 -11.26044 -11.11334 -10.88324 -10.84330 -10.77186 -10.65396 -10.58892 -10.22600 -9.98783 -9.91077 -9.78978 -9.60427 -9.02586 -8.84623 -8.30530 -7.05537 -5.95665 -3.98971 3.36269 3.40084 3.43617 4.23750 4.45557 4.81228 4.88921 5.01653 5.18172 5.26722 5.34645 5.43382 5.49534 5.56199 5.65437 5.75107 5.90847 5.98301 6.08630 6.10560 6.16266 6.18424 6.23669 6.25722 6.27673 6.34281 6.43521 6.45301 6.56377 6.59710 6.75991 6.88050 7.00468 7.26804 7.47319 7.79749 7.92464 8.34001 8.58494 8.67069 9.08210 9.65930 11.10746 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.039761 B = 0.005841 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.039347 B = 4792.362983 C = 5079.961213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.150 4.150 3 C 0.220 3.780 4 H 0.034 0.966 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.651 5.651 14 C 0.045 3.955 15 H 0.094 0.906 16 C -0.171 4.171 17 C -0.143 4.143 18 C -0.079 4.079 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.080 4.080 23 H 0.031 0.969 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.400 3.419 10.390 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C 0.112 3.888 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.281 5.281 14 C -0.067 4.067 15 H 0.112 0.888 16 C -0.209 4.209 17 C -0.145 4.145 18 C -0.117 4.117 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.117 4.117 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.147 0.853 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.041 3.910 10.038 14.726 hybrid contribution 0.425 -0.844 -0.208 0.967 sum -9.616 3.066 9.830 14.089 Atomic orbital electron populations 1.22042 0.99528 0.99312 1.00200 1.22279 0.91706 1.02223 1.02732 1.19230 0.95246 0.88388 0.85929 0.94772 1.21128 0.91102 1.36080 1.05130 0.92078 1.24935 0.98170 0.95538 0.95796 1.69862 1.34851 1.39277 1.09644 0.86581 0.85674 0.78168 0.77058 1.20410 1.21492 1.20332 1.60542 1.18582 1.41183 1.07745 1.22671 0.91413 0.97833 0.94738 0.88839 1.23240 1.02119 0.91641 1.03944 1.21788 0.94026 1.04617 0.94038 1.21106 0.92855 1.00146 0.97587 1.21487 0.98532 1.00310 0.94827 1.21480 0.95987 1.00777 0.97226 1.21486 0.95066 1.00633 0.97905 1.21010 0.99187 0.99564 0.91958 0.95008 0.93662 0.93892 0.88350 0.94955 0.93040 0.85305 0.88970 0.90059 0.92218 0.92072 0.92634 0.92108 0.92293 0.92724 0.92517 0.92135 0.92241 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 8.58 37.16 0.32 -2.70 16 2 C -0.15 -3.52 5.24 -26.72 -0.14 -3.66 16 3 C 0.22 5.47 2.16 -68.87 -0.15 5.32 16 4 H 0.03 0.95 7.73 -51.93 -0.40 0.55 16 5 C -0.50 -13.71 8.84 -34.44 -0.30 -14.02 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.59 11.29 55.43 0.63 -24.96 16 9 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 N -0.65 -13.78 6.09 -100.99 -0.62 -14.39 16 14 C 0.05 0.81 3.75 -67.74 -0.25 0.56 16 15 H 0.09 1.79 6.08 -51.93 -0.32 1.47 16 16 C -0.17 -2.73 9.85 -26.80 -0.26 -2.99 16 17 C -0.14 -2.10 1.96 -154.49 -0.30 -2.40 16 18 C -0.08 -1.01 5.67 -26.56 -0.15 -1.16 16 19 C -0.11 -1.24 5.93 -26.67 -0.16 -1.40 16 20 C -0.12 -1.24 5.82 -26.79 -0.16 -1.40 16 21 C -0.11 -1.31 5.93 -26.66 -0.16 -1.47 16 22 C -0.08 -1.10 4.60 -26.56 -0.12 -1.22 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.82 5.76 -51.93 -0.30 0.52 16 25 H 0.04 0.85 7.92 -51.93 -0.41 0.44 16 26 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 27 H 0.03 0.74 8.04 -51.93 -0.42 0.33 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.33 6.66 7.05 -39.29 -0.28 6.39 16 30 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -27.42 311.71 -9.68 -37.11 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.44 Total: 6.08 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -1.93 Total: -25.08 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.01 Total: -39.36 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.42 -9.68 -37.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395657641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.376 kcal (2) G-P(sol) polarization free energy of solvation -27.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds