Wall clock time and date at job start Sun Mar 29 2020 22:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53007 * 109.47089 * 2 1 4 4 H 1.08999 * 109.46899 * 305.00211 * 3 2 1 5 5 C 1.50693 * 109.46730 * 184.99868 * 3 2 1 6 6 H 1.07998 * 120.00206 * 240.00077 * 5 3 2 7 7 C 1.37882 * 120.00136 * 60.00536 * 5 3 2 8 8 N 1.31506 * 119.99709 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00078 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47037 * 59.99618 * 9 7 5 11 11 H 1.48498 * 109.47266 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47015 * 300.00041 * 9 7 5 13 13 N 1.46898 * 109.46549 * 65.00240 * 3 2 1 14 14 C 1.46905 * 111.00296 * 274.99514 * 13 3 2 15 15 H 1.09007 * 115.54580 * 9.30288 * 14 13 3 16 16 C 1.53032 * 117.50535 * 223.61483 * 14 13 3 17 17 C 1.52843 * 59.98436 * 252.50470 * 16 14 13 18 18 C 1.53154 * 117.67594 * 252.26908 * 17 16 14 19 19 C 1.53181 * 108.88583 * 268.49801 * 18 17 16 20 20 C 1.52937 * 109.45407 * 303.44353 * 19 18 17 21 21 C 1.52948 * 109.82647 * 62.97768 * 20 19 18 22 22 C 1.53144 * 117.67984 * 107.76342 * 17 16 14 23 23 H 1.08993 * 109.46758 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47088 * 300.00021 * 1 2 3 25 25 H 1.09001 * 109.46912 * 59.99851 * 1 2 3 26 26 H 1.08994 * 109.46943 * 240.00493 * 2 1 3 27 27 H 1.08997 * 109.47285 * 120.00438 * 2 1 3 28 28 H 0.96997 * 119.99925 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00527 * 38.95499 * 13 3 2 30 30 H 1.09002 * 117.50529 * 359.97438 * 16 14 13 31 31 H 1.09002 * 117.50686 * 145.01623 * 16 14 13 32 32 H 1.08996 * 109.57274 * 28.32166 * 18 17 16 33 33 H 1.09005 * 109.56303 * 148.68181 * 18 17 16 34 34 H 1.08992 * 109.47430 * 183.44572 * 19 18 17 35 35 H 1.08999 * 109.47158 * 63.43429 * 19 18 17 36 36 H 1.09003 * 109.41234 * 302.87190 * 20 19 18 37 37 H 1.08999 * 109.35305 * 183.05234 * 20 19 18 38 38 H 1.08994 * 109.47573 * 177.01794 * 21 20 19 39 39 H 1.09007 * 109.47459 * 57.00991 * 21 20 19 40 40 H 1.08996 * 109.57122 * 211.30909 * 22 17 16 41 41 H 1.08999 * 109.57178 * 331.55214 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1434 0.8784 -1.2280 8 7 3.4063 0.3368 -2.1729 9 14 6.0050 0.8812 -1.3818 10 1 6.5975 0.1472 -0.2349 11 1 6.3978 0.2178 -2.6509 12 1 6.4996 2.2814 -1.3820 13 7 1.6515 2.0992 1.2553 14 6 0.2914 2.6467 1.1639 15 1 -0.2728 2.3586 0.2768 16 6 0.0551 4.0500 1.7268 17 6 -0.4864 2.8279 2.4678 18 6 -1.9988 2.5885 2.4350 19 6 -2.6360 3.2755 3.6467 20 6 -1.9865 2.7524 4.9287 21 6 -0.5009 3.1157 4.9432 22 6 0.2049 2.4233 3.7731 23 1 -0.3632 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8935 -0.5139 0.8899 28 1 3.8293 -0.0610 -2.9498 29 1 1.7344 1.4652 2.0358 30 1 0.9088 4.5668 2.1653 31 1 -0.6644 4.6852 1.2101 32 1 -2.4147 3.0060 1.5181 33 1 -2.1998 1.5179 2.4748 34 1 -3.7042 3.0601 3.6665 35 1 -2.4836 4.3524 3.5756 36 1 -2.0948 1.6687 4.9736 37 1 -2.4777 3.2016 5.7918 38 1 -0.0555 2.7870 5.8821 39 1 -0.3899 4.1958 4.8468 40 1 0.1444 1.3423 3.8984 41 1 1.2506 2.7294 3.7425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395657641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:15 Heat of formation + Delta-G solvation = -19.244955 kcal Electronic energy + Delta-G solvation = -17736.980522 eV Core-core repulsion = 15229.495224 eV Total energy + Delta-G solvation = -2507.485298 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56506 -37.80713 -35.53401 -33.77592 -31.88914 -31.21742 -28.59454 -27.80967 -24.78938 -23.66618 -22.52309 -21.59112 -21.36047 -19.37137 -18.35758 -16.88750 -16.69723 -16.15716 -15.26380 -15.23746 -15.09199 -14.70218 -14.44801 -14.18972 -13.76723 -13.47296 -13.11710 -13.02760 -12.92338 -12.70457 -12.57248 -12.48526 -12.03742 -11.99060 -11.88151 -11.83869 -11.61408 -11.53407 -11.12471 -10.93519 -10.74055 -10.43184 -10.27505 -8.72097 -8.07899 -6.19371 1.42747 1.44454 1.52161 2.44239 2.95563 3.19099 3.48766 3.86265 3.91019 4.08351 4.19668 4.33656 4.40511 4.48615 4.51913 4.54811 4.61796 4.67582 4.69453 4.83685 4.86709 4.99672 5.03592 5.06725 5.13634 5.18769 5.23486 5.24518 5.31646 5.38524 5.39436 5.43564 5.57832 5.61493 5.64248 5.74083 5.88244 6.33339 6.70182 6.87733 6.97334 7.50307 8.96506 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.039761 B = 0.005841 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.039347 B = 4792.362983 C = 5079.961213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.142 4.142 3 C 0.228 3.772 4 H -0.003 1.003 5 C -0.519 4.519 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.920 5.920 9 Si 0.959 3.041 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.654 5.654 14 C 0.013 3.987 15 H 0.082 0.918 16 C -0.167 4.167 17 C -0.114 4.114 18 C -0.081 4.081 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.109 4.109 22 C -0.082 4.082 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.330 0.670 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.464 3.633 12.028 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.120 3.880 4 H 0.015 0.985 5 C -0.557 4.557 6 H 0.070 0.930 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.785 3.215 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.283 5.283 14 C -0.098 4.098 15 H 0.099 0.901 16 C -0.205 4.205 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.119 4.119 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.119 4.133 11.690 16.655 hybrid contribution 0.736 -0.878 -0.711 1.349 sum -10.383 3.255 10.979 15.458 Atomic orbital electron populations 1.21885 0.96519 1.00656 1.00653 1.22083 0.94378 1.00743 1.00977 1.18925 0.93794 0.88975 0.86346 0.98498 1.21455 0.92745 1.36312 1.05202 0.93015 1.25687 1.02513 0.95119 0.95452 1.69998 1.36461 1.39636 1.09938 0.85600 0.80466 0.78179 0.77267 1.19651 1.20924 1.20091 1.60403 1.21133 1.40666 1.06118 1.22628 0.90581 0.99902 0.96709 0.90072 1.23258 1.02256 0.91191 1.03845 1.21873 0.95110 1.02067 0.92459 1.21165 0.91104 1.00650 0.98905 1.21476 0.99443 1.00056 0.93802 1.21488 0.95031 1.01042 0.97768 1.21463 0.95810 1.00240 0.97157 1.21040 0.98470 0.99866 0.92573 0.93113 0.92013 0.94613 0.91572 0.95030 0.93052 0.85039 0.89851 0.88581 0.92122 0.91851 0.90827 0.92038 0.92145 0.90840 0.91311 0.92233 0.92190 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 8.58 71.99 0.62 -4.85 16 2 C -0.14 -6.82 5.24 30.60 0.16 -6.66 16 3 C 0.23 11.75 2.16 44.17 0.10 11.85 16 4 H 0.00 -0.17 7.73 -2.39 -0.02 -0.19 16 5 C -0.52 -29.47 8.84 25.60 0.23 -29.24 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.59 5.29 84.66 0.45 1.04 16 8 N -0.92 -53.78 11.29 21.45 0.24 -53.53 16 9 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.65 -28.26 6.09 -473.41 -2.88 -31.15 16 14 C 0.01 0.46 3.75 44.89 0.17 0.63 16 15 H 0.08 3.16 6.08 -2.38 -0.01 3.14 16 16 C -0.17 -5.22 9.85 30.55 0.30 -4.92 16 17 C -0.11 -3.18 1.96 -52.17 -0.10 -3.28 16 18 C -0.08 -1.86 5.67 30.71 0.17 -1.69 16 19 C -0.11 -2.03 5.93 30.63 0.18 -1.85 16 20 C -0.12 -2.04 5.82 30.56 0.18 -1.86 16 21 C -0.11 -2.24 5.93 30.64 0.18 -2.05 16 22 C -0.08 -2.14 4.60 30.70 0.14 -2.00 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 2.19 5.76 -2.39 -0.01 2.18 16 25 H 0.03 1.42 7.92 -2.39 -0.02 1.40 16 26 H 0.07 3.62 5.95 -2.39 -0.01 3.61 16 27 H 0.03 1.47 8.04 -2.39 -0.02 1.45 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.33 13.61 7.05 -89.69 -0.63 12.98 16 30 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.06 1.40 8.09 -2.39 -0.02 1.38 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.65 7.53 -2.39 -0.02 1.64 16 Total: -1.00 -59.79 311.71 2.50 -57.29 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.35 Total: 25.52 kcal Atomic # 6 Polarization: -47.66 SS G_CDS: 2.77 Total: -44.89 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.64 Total: -84.68 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -59.79 2.50 -57.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395657641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.045 kcal (2) G-P(sol) polarization free energy of solvation -59.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds