Wall clock time and date at job start Sun Mar 29 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 112.84774 * 2 1 4 4 N 1.46899 * 109.47054 * 54.14392 * 3 2 1 5 5 C 1.46847 * 110.99999 * 201.23907 * 4 3 2 6 6 C 1.53039 * 109.57813 * 174.18989 * 5 4 3 7 7 C 1.53118 * 109.27404 * 59.08024 * 6 5 4 8 8 C 1.53109 * 109.21831 * 302.44447 * 7 6 5 9 9 H 1.09000 * 109.50663 * 297.67782 * 8 7 6 10 10 C 1.50698 * 109.50772 * 177.59999 * 8 7 6 11 11 H 1.08006 * 120.00496 * 240.00166 * 10 8 7 12 12 C 1.37877 * 120.00046 * 59.99977 * 10 8 7 13 13 N 1.31513 * 119.99744 * 359.97438 * 12 10 8 14 14 Si 1.86794 * 120.00214 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47080 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47468 * 120.00094 * 14 12 10 17 17 H 1.48503 * 109.47375 * 240.00140 * 14 12 10 18 18 C 1.46848 * 111.00334 * 77.02740 * 4 3 2 19 19 C 1.53780 * 113.61673 * 131.19920 * 2 1 3 20 20 C 1.53949 * 87.02215 * 89.23212 * 19 2 1 21 21 C 1.53785 * 87.11339 * 25.36075 * 20 19 2 22 22 H 1.08996 * 109.47312 * 54.87903 * 1 2 3 23 23 H 1.09001 * 109.46715 * 174.87138 * 1 2 3 24 24 H 1.09000 * 109.47182 * 294.86723 * 1 2 3 25 25 H 1.08997 * 109.47074 * 294.14238 * 3 2 1 26 26 H 1.09004 * 109.47149 * 174.13839 * 3 2 1 27 27 H 1.08996 * 109.46484 * 294.17827 * 5 4 3 28 28 H 1.09000 * 109.46051 * 54.15630 * 5 4 3 29 29 H 1.09012 * 109.45435 * 299.17973 * 6 5 4 30 30 H 1.08994 * 109.56273 * 179.05734 * 6 5 4 31 31 H 1.09001 * 109.52562 * 182.50373 * 7 6 5 32 32 H 1.09003 * 109.51899 * 62.38303 * 7 6 5 33 33 H 0.97003 * 120.00183 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.45727 * 65.82275 * 18 4 3 35 35 H 1.09000 * 109.46147 * 305.86067 * 18 4 3 36 36 H 1.09001 * 113.61667 * 203.75168 * 19 2 1 37 37 H 1.08997 * 113.61359 * 334.64839 * 19 2 1 38 38 H 1.09004 * 113.53412 * 270.81105 * 20 19 2 39 39 H 1.09002 * 113.67101 * 139.93698 * 20 19 2 40 40 H 1.08995 * 113.61578 * 220.09051 * 21 20 19 41 41 H 1.09000 * 113.68489 * 89.19830 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4100 0.0000 4 7 1.5666 2.1762 1.1225 5 6 1.6936 3.6203 0.8885 6 6 0.9767 4.3855 2.0033 7 6 1.5956 4.0103 3.3527 8 6 1.4937 2.4955 3.5501 9 1 0.4444 2.2013 3.5742 10 6 2.1536 2.1118 4.8495 11 1 2.9894 1.4278 4.8495 12 6 1.6903 2.6341 6.0385 13 7 0.6729 3.4674 6.0385 14 14 2.5087 2.1592 7.6491 15 1 3.6225 1.2149 7.3788 16 1 3.0411 3.3768 8.3117 17 1 1.5127 1.5077 8.5372 18 6 2.1966 1.7863 2.3904 19 6 2.1460 -0.9281 1.0602 20 6 2.0951 -2.0419 -0.0013 21 6 2.1460 -0.9280 -1.0603 22 1 -0.3634 0.5912 -0.8405 23 1 -0.3633 -1.0236 -0.0919 24 1 -0.3633 0.4321 0.9324 25 1 1.8778 1.9080 -0.9378 26 1 3.2072 1.3479 0.1050 27 1 2.7482 3.8956 0.8805 28 1 1.2449 3.8734 -0.0720 29 1 -0.0811 4.1220 2.0024 30 1 1.0854 5.4574 1.8385 31 1 1.0590 4.5190 4.1536 32 1 2.6435 4.3101 3.3686 33 1 0.3467 3.8346 6.8750 34 1 3.2489 2.0701 2.3753 35 1 2.1135 0.7072 2.5204 36 1 3.1585 -0.6477 1.3506 37 1 1.4940 -1.1080 1.9149 38 1 1.1596 -2.6013 -0.0007 39 1 2.9745 -2.6860 -0.0024 40 1 1.4939 -1.1079 -1.9150 41 1 3.1580 -0.6468 -1.3518 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397579106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:50 Heat of formation + Delta-G solvation = 3.757358 kcal Electronic energy + Delta-G solvation = -18011.524389 eV Core-core repulsion = 15505.036546 eV Total energy + Delta-G solvation = -2506.487843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.64301 -37.47010 -33.57247 -31.68682 -29.83434 -29.05273 -26.21922 -25.50591 -24.79325 -23.01528 -21.22408 -20.89162 -18.55629 -17.92900 -16.31856 -15.31246 -15.11968 -14.80809 -14.28487 -14.13181 -13.22748 -13.10451 -12.82279 -12.54076 -12.36861 -12.12418 -11.93558 -11.75176 -11.49317 -11.20603 -10.95737 -10.82772 -10.63304 -10.60136 -10.24989 -10.07453 -9.91891 -9.82122 -9.64570 -9.37989 -8.87515 -8.60578 -8.26271 -7.53480 -5.93752 -3.99528 3.31609 3.39702 3.43383 4.40957 4.54099 4.82685 4.87846 5.03387 5.09675 5.36328 5.51155 5.70741 5.75337 5.79338 5.87284 5.88581 5.92256 6.01422 6.09154 6.14647 6.16263 6.25811 6.33132 6.39652 6.50285 6.53735 6.63121 6.66398 6.78388 6.81302 6.86405 7.07735 7.28635 7.47772 7.77232 7.81310 7.94113 8.14970 8.23335 8.54155 9.05176 9.64618 11.12205 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026150 B = 0.007341 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.484666 B = 3813.402612 C = 4528.106087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C 0.070 3.930 4 N -0.533 5.533 5 C 0.063 3.937 6 C -0.116 4.116 7 C -0.111 4.111 8 C 0.055 3.945 9 H 0.033 0.967 10 C -0.512 4.512 11 H 0.053 0.947 12 C 0.062 3.938 13 N -0.889 5.889 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.062 3.938 19 C -0.130 4.130 20 C -0.143 4.143 21 C -0.134 4.134 22 H 0.048 0.952 23 H 0.043 0.957 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.027 0.973 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.028 0.972 33 H 0.258 0.742 34 H 0.013 0.987 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.453 -5.065 -12.246 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.072 4.072 3 C -0.058 4.058 4 N -0.257 5.257 5 C -0.065 4.065 6 C -0.154 4.154 7 C -0.149 4.149 8 C 0.036 3.964 9 H 0.051 0.949 10 C -0.551 4.551 11 H 0.071 0.929 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.716 3.284 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.065 4.065 19 C -0.168 4.168 20 C -0.180 4.180 21 C -0.172 4.172 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.849 -5.060 -12.086 13.131 hybrid contribution 1.409 0.065 0.860 1.652 sum 2.259 -4.995 -11.227 12.494 Atomic orbital electron populations 1.21379 0.92697 1.00045 1.02896 1.21761 0.96255 0.93181 0.95992 1.22012 0.95801 0.93636 0.94367 1.61938 1.57523 1.03793 1.02465 1.22027 0.97748 0.88414 0.98299 1.21664 1.00272 0.96909 0.96580 1.21651 0.98248 1.00389 0.94629 1.18650 0.96406 0.90947 0.90356 0.94915 1.21206 1.15876 1.26792 0.91216 0.92900 1.24930 0.94974 0.95114 0.98842 1.69904 1.25320 1.31265 1.26287 0.86606 0.79462 0.78269 0.84062 1.19882 1.21134 1.21063 1.22490 0.94922 1.00440 0.88666 1.23076 1.01149 0.95617 0.96936 1.22855 1.01385 0.96394 0.97361 1.22988 1.00647 0.96882 0.96694 0.93259 0.93814 0.90767 0.92077 0.95470 0.96252 0.92667 0.92168 0.93726 0.89214 0.95346 0.93182 0.96888 0.91170 0.90462 0.90903 0.90492 0.92110 0.91897 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 8.75 37.16 0.33 -1.26 16 2 C -0.07 -1.00 1.05 -153.70 -0.16 -1.16 16 3 C 0.07 1.09 4.54 -3.82 -0.02 1.07 16 4 N -0.53 -9.89 3.95 -234.67 -0.93 -10.82 16 5 C 0.06 1.14 5.42 -3.83 -0.02 1.12 16 6 C -0.12 -2.32 6.10 -26.65 -0.16 -2.48 16 7 C -0.11 -2.68 5.02 -26.61 -0.13 -2.81 16 8 C 0.06 1.39 2.26 -91.70 -0.21 1.19 16 9 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 10 C -0.51 -14.17 8.57 -34.44 -0.30 -14.46 16 11 H 0.05 1.45 7.75 -52.48 -0.41 1.04 16 12 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 13 N -0.89 -25.58 11.35 55.43 0.63 -24.95 16 14 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 C 0.06 1.32 4.38 -3.83 -0.02 1.30 16 19 C -0.13 -1.89 4.97 -25.83 -0.13 -2.01 16 20 C -0.14 -1.69 7.74 -25.83 -0.20 -1.89 16 21 C -0.13 -1.57 7.23 -25.91 -0.19 -1.76 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.55 7.31 -51.93 -0.38 0.17 16 24 H 0.07 1.23 7.86 -51.93 -0.41 0.82 16 25 H 0.06 0.87 7.77 -51.93 -0.40 0.47 16 26 H 0.03 0.43 7.90 -51.93 -0.41 0.02 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.88 7.92 -51.93 -0.41 0.47 16 29 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 1.47 4.83 -51.93 -0.25 1.22 16 36 H 0.08 1.16 7.76 -51.93 -0.40 0.76 16 37 H 0.07 1.15 7.68 -51.93 -0.40 0.75 16 38 H 0.08 0.87 7.61 -51.93 -0.40 0.47 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -27.79 307.67 -9.53 -37.32 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.54 Total: -1.08 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -1.30 Total: -21.53 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.30 Total: -35.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.79 -9.53 -37.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397579106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.078 kcal (2) G-P(sol) polarization free energy of solvation -27.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds