Wall clock time and date at job start Sun Mar 29 2020 22:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 112.84774 * 2 1 4 4 N 1.46899 * 109.47054 * 54.14392 * 3 2 1 5 5 C 1.46847 * 110.99999 * 201.23907 * 4 3 2 6 6 C 1.53039 * 109.57813 * 174.18989 * 5 4 3 7 7 C 1.53118 * 109.27404 * 59.08024 * 6 5 4 8 8 C 1.53109 * 109.21831 * 302.44447 * 7 6 5 9 9 H 1.09000 * 109.50663 * 297.67782 * 8 7 6 10 10 C 1.50698 * 109.50772 * 177.59999 * 8 7 6 11 11 H 1.08006 * 120.00496 * 240.00166 * 10 8 7 12 12 C 1.37877 * 120.00046 * 59.99977 * 10 8 7 13 13 N 1.31513 * 119.99744 * 359.97438 * 12 10 8 14 14 Si 1.86794 * 120.00214 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47080 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47468 * 120.00094 * 14 12 10 17 17 H 1.48503 * 109.47375 * 240.00140 * 14 12 10 18 18 C 1.46848 * 111.00334 * 77.02740 * 4 3 2 19 19 C 1.53780 * 113.61673 * 131.19920 * 2 1 3 20 20 C 1.53949 * 87.02215 * 89.23212 * 19 2 1 21 21 C 1.53785 * 87.11339 * 25.36075 * 20 19 2 22 22 H 1.08996 * 109.47312 * 54.87903 * 1 2 3 23 23 H 1.09001 * 109.46715 * 174.87138 * 1 2 3 24 24 H 1.09000 * 109.47182 * 294.86723 * 1 2 3 25 25 H 1.08997 * 109.47074 * 294.14238 * 3 2 1 26 26 H 1.09004 * 109.47149 * 174.13839 * 3 2 1 27 27 H 1.08996 * 109.46484 * 294.17827 * 5 4 3 28 28 H 1.09000 * 109.46051 * 54.15630 * 5 4 3 29 29 H 1.09012 * 109.45435 * 299.17973 * 6 5 4 30 30 H 1.08994 * 109.56273 * 179.05734 * 6 5 4 31 31 H 1.09001 * 109.52562 * 182.50373 * 7 6 5 32 32 H 1.09003 * 109.51899 * 62.38303 * 7 6 5 33 33 H 0.97003 * 120.00183 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.45727 * 65.82275 * 18 4 3 35 35 H 1.09000 * 109.46147 * 305.86067 * 18 4 3 36 36 H 1.09001 * 113.61667 * 203.75168 * 19 2 1 37 37 H 1.08997 * 113.61359 * 334.64839 * 19 2 1 38 38 H 1.09004 * 113.53412 * 270.81105 * 20 19 2 39 39 H 1.09002 * 113.67101 * 139.93698 * 20 19 2 40 40 H 1.08995 * 113.61578 * 220.09051 * 21 20 19 41 41 H 1.09000 * 113.68489 * 89.19830 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1240 1.4100 0.0000 4 7 1.5666 2.1762 1.1225 5 6 1.6936 3.6203 0.8885 6 6 0.9767 4.3855 2.0033 7 6 1.5956 4.0103 3.3527 8 6 1.4937 2.4955 3.5501 9 1 0.4444 2.2013 3.5742 10 6 2.1536 2.1118 4.8495 11 1 2.9894 1.4278 4.8495 12 6 1.6903 2.6341 6.0385 13 7 0.6729 3.4674 6.0385 14 14 2.5087 2.1592 7.6491 15 1 3.6225 1.2149 7.3788 16 1 3.0411 3.3768 8.3117 17 1 1.5127 1.5077 8.5372 18 6 2.1966 1.7863 2.3904 19 6 2.1460 -0.9281 1.0602 20 6 2.0951 -2.0419 -0.0013 21 6 2.1460 -0.9280 -1.0603 22 1 -0.3634 0.5912 -0.8405 23 1 -0.3633 -1.0236 -0.0919 24 1 -0.3633 0.4321 0.9324 25 1 1.8778 1.9080 -0.9378 26 1 3.2072 1.3479 0.1050 27 1 2.7482 3.8956 0.8805 28 1 1.2449 3.8734 -0.0720 29 1 -0.0811 4.1220 2.0024 30 1 1.0854 5.4574 1.8385 31 1 1.0590 4.5190 4.1536 32 1 2.6435 4.3101 3.3686 33 1 0.3467 3.8346 6.8750 34 1 3.2489 2.0701 2.3753 35 1 2.1135 0.7072 2.5204 36 1 3.1585 -0.6477 1.3506 37 1 1.4940 -1.1080 1.9149 38 1 1.1596 -2.6013 -0.0007 39 1 2.9745 -2.6860 -0.0024 40 1 1.4939 -1.1079 -1.9150 41 1 3.1580 -0.6468 -1.3518 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397579106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:50 Heat of formation + Delta-G solvation = -10.806554 kcal Electronic energy + Delta-G solvation = -18012.155928 eV Core-core repulsion = 15505.036546 eV Total energy + Delta-G solvation = -2507.119381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85525 -39.00053 -35.45955 -33.42458 -31.68516 -30.26743 -27.53557 -27.01536 -26.37967 -24.43891 -22.99696 -22.22668 -20.32270 -19.06869 -18.37837 -16.83167 -16.47612 -16.29336 -15.83130 -15.54835 -14.91248 -14.52021 -14.47954 -14.14610 -13.92231 -13.52204 -13.29627 -12.93846 -12.89898 -12.83872 -12.59778 -12.52785 -12.36218 -11.94774 -11.79576 -11.69127 -11.36041 -11.31438 -11.15853 -10.82053 -10.74051 -10.41623 -10.37420 -9.03926 -8.08328 -6.22368 1.38431 1.39985 1.51385 2.41948 3.12588 3.18364 3.73819 3.81935 3.93761 4.03375 4.25135 4.29067 4.34852 4.44855 4.59679 4.67684 4.72615 4.79594 4.85519 4.89023 4.94057 4.96052 5.03807 5.06388 5.11719 5.13369 5.16757 5.22356 5.29950 5.40868 5.41875 5.54786 5.59801 5.63526 5.73297 5.99636 6.15863 6.24422 6.46173 6.49893 6.91168 7.45460 8.96477 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026150 B = 0.007341 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.484666 B = 3813.402612 C = 4528.106087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.078 4.078 3 C 0.070 3.930 4 N -0.540 5.540 5 C 0.065 3.935 6 C -0.109 4.109 7 C -0.105 4.105 8 C 0.055 3.945 9 H -0.005 1.005 10 C -0.535 4.535 11 H 0.048 0.952 12 C 0.014 3.986 13 N -0.916 5.916 14 Si 0.952 3.048 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.079 3.921 19 C -0.142 4.142 20 C -0.132 4.132 21 C -0.119 4.119 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.026 0.974 27 H 0.021 0.979 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.003 0.997 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.139 -5.728 -14.114 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.079 4.079 3 C -0.057 4.057 4 N -0.264 5.264 5 C -0.063 4.063 6 C -0.147 4.147 7 C -0.143 4.143 8 C 0.036 3.964 9 H 0.013 0.987 10 C -0.574 4.574 11 H 0.067 0.933 12 C -0.185 4.185 13 N -0.555 5.555 14 Si 0.778 3.222 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.048 4.048 19 C -0.180 4.180 20 C -0.170 4.170 21 C -0.157 4.157 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.538 -5.728 -13.971 15.178 hybrid contribution 1.164 0.279 1.456 1.885 sum 2.702 -5.449 -12.515 13.915 Atomic orbital electron populations 1.21309 0.92765 1.00883 1.01531 1.21848 0.96230 0.92666 0.97117 1.22127 0.95719 0.94195 0.93702 1.61893 1.57594 1.04658 1.02253 1.22053 0.97809 0.87658 0.98754 1.21571 0.99467 0.98773 0.94904 1.21470 0.97413 0.99178 0.96287 1.18559 0.94243 0.92220 0.91400 0.98730 1.21560 1.16037 1.26943 0.92813 0.93347 1.25710 0.95531 0.95022 1.02193 1.70044 1.26385 1.31966 1.27129 0.85597 0.78631 0.78135 0.79851 1.19246 1.20526 1.20519 1.22127 0.93739 0.99825 0.89144 1.23088 1.00030 0.97869 0.97004 1.22824 1.02387 0.96000 0.95740 1.22914 1.01199 0.95141 0.96410 0.92114 0.92378 0.94099 0.89897 0.95556 0.96058 0.89321 0.93140 0.91376 0.92489 0.96259 0.93084 0.97923 0.91287 0.91540 0.93350 0.89706 0.90900 0.90109 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.87 8.75 71.98 0.63 -2.24 16 2 C -0.08 -2.05 1.05 -51.66 -0.05 -2.11 16 3 C 0.07 2.03 4.54 86.30 0.39 2.42 16 4 N -0.54 -19.63 3.95 -896.35 -3.54 -23.17 16 5 C 0.06 2.22 5.42 86.33 0.47 2.69 16 6 C -0.11 -4.32 6.10 30.65 0.19 -4.13 16 7 C -0.11 -5.22 5.02 30.67 0.15 -5.07 16 8 C 0.05 2.87 2.26 -11.49 -0.03 2.84 16 9 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 10 C -0.53 -30.59 8.57 25.60 0.22 -30.37 16 11 H 0.05 2.73 7.75 -2.91 -0.02 2.71 16 12 C 0.01 0.80 5.30 84.65 0.45 1.25 16 13 N -0.92 -54.35 11.35 21.45 0.24 -54.10 16 14 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 C 0.08 3.46 4.38 86.33 0.38 3.84 16 19 C -0.14 -4.04 4.97 31.18 0.15 -3.89 16 20 C -0.13 -2.81 7.74 31.18 0.24 -2.57 16 21 C -0.12 -2.38 7.23 31.12 0.23 -2.16 16 22 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.35 7.31 -2.39 -0.02 1.34 16 24 H 0.04 1.35 7.86 -2.39 -0.02 1.33 16 25 H 0.08 2.06 7.77 -2.39 -0.02 2.04 16 26 H 0.03 0.78 7.90 -2.39 -0.02 0.76 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 2.50 7.92 -2.39 -0.02 2.48 16 29 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.06 3.19 6.15 -2.39 -0.01 3.17 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.07 3.00 4.83 -2.39 -0.01 2.99 16 36 H 0.07 2.00 7.76 -2.39 -0.02 1.98 16 37 H 0.05 1.58 7.68 -2.39 -0.02 1.56 16 38 H 0.08 1.68 7.61 -2.39 -0.02 1.66 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16 41 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 Total: -1.00 -61.52 307.67 3.11 -58.41 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.96 Total: 11.66 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 3.42 Total: -39.49 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -3.30 Total: -77.28 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -61.52 3.11 -58.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397579106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.604 kcal (2) G-P(sol) polarization free energy of solvation -61.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds